Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03425 and OKGIIK_03430 are separated by 28 nucleotides OKGIIK_03430 and OKGIIK_03435 are separated by 89 nucleotides OKGIIK_03435 and rlmKL overlap by 4 nucleotides
OKGIIK_03425: OKGIIK_03425 - AraC family transcriptional regulator, at 763,542 to 764,378
_03425
OKGIIK_03430: OKGIIK_03430 - N-acetylmuramoyl-L-alanine amidase, at 764,407 to 764,961
_03430
OKGIIK_03435: OKGIIK_03435 - Alpha/beta hydrolase, at 765,051 to 765,578
_03435
OKGIIK_03440: rlmKL - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 765,575 to 767,776
rlmKL
Position (kb) 765
766 Strain fitness (log2 ratio) -2
-1
0
1
2 at 764.161 kb on + strand, within OKGIIK_03425 at 764.236 kb on + strand, within OKGIIK_03425 at 764.236 kb on + strand, within OKGIIK_03425 at 764.237 kb on - strand, within OKGIIK_03425 at 764.237 kb on - strand, within OKGIIK_03425 at 764.237 kb on - strand, within OKGIIK_03425 at 764.408 kb on + strand at 764.408 kb on + strand at 764.408 kb on + strand at 764.408 kb on + strand at 764.408 kb on + strand at 764.409 kb on - strand at 764.754 kb on - strand, within OKGIIK_03430 at 764.754 kb on - strand, within OKGIIK_03430 at 764.783 kb on + strand, within OKGIIK_03430 at 764.783 kb on + strand, within OKGIIK_03430 at 764.783 kb on + strand, within OKGIIK_03430 at 764.783 kb on + strand, within OKGIIK_03430 at 764.783 kb on + strand, within OKGIIK_03430 at 764.783 kb on + strand, within OKGIIK_03430 at 764.783 kb on + strand, within OKGIIK_03430 at 764.783 kb on + strand, within OKGIIK_03430 at 764.783 kb on + strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.784 kb on - strand, within OKGIIK_03430 at 764.786 kb on + strand, within OKGIIK_03430 at 764.786 kb on + strand, within OKGIIK_03430 at 764.786 kb on + strand, within OKGIIK_03430 at 764.786 kb on + strand, within OKGIIK_03430 at 764.787 kb on - strand, within OKGIIK_03430 at 764.787 kb on - strand, within OKGIIK_03430 at 764.787 kb on - strand, within OKGIIK_03430 at 764.928 kb on - strand at 764.928 kb on - strand at 764.928 kb on - strand at 764.928 kb on - strand at 764.928 kb on - strand at 765.008 kb on + strand at 765.008 kb on + strand at 765.009 kb on - strand at 765.009 kb on - strand at 765.009 kb on - strand at 765.009 kb on - strand at 765.009 kb on - strand at 765.166 kb on - strand, within OKGIIK_03435 at 765.166 kb on - strand, within OKGIIK_03435 at 765.363 kb on + strand, within OKGIIK_03435 at 765.524 kb on + strand, within OKGIIK_03435 at 765.524 kb on + strand, within OKGIIK_03435 at 765.524 kb on + strand, within OKGIIK_03435 at 765.524 kb on + strand, within OKGIIK_03435 at 765.524 kb on + strand, within OKGIIK_03435 at 765.524 kb on + strand, within OKGIIK_03435 at 765.525 kb on - strand, within OKGIIK_03435 at 765.525 kb on - strand, within OKGIIK_03435 at 765.525 kb on - strand, within OKGIIK_03435 at 765.525 kb on - strand, within OKGIIK_03435 at 765.525 kb on - strand, within OKGIIK_03435 at 765.525 kb on - strand, within OKGIIK_03435 at 765.525 kb on - strand, within OKGIIK_03435 at 765.629 kb on + strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.630 kb on - strand at 765.722 kb on + strand at 765.722 kb on + strand at 765.806 kb on + strand, within rlmKL at 766.017 kb on + strand, within rlmKL at 766.017 kb on + strand, within rlmKL at 766.017 kb on + strand, within rlmKL at 766.017 kb on + strand, within rlmKL at 766.017 kb on + strand, within rlmKL at 766.018 kb on - strand, within rlmKL at 766.018 kb on - strand, within rlmKL at 766.018 kb on - strand, within rlmKL at 766.018 kb on - strand, within rlmKL at 766.160 kb on + strand, within rlmKL at 766.160 kb on + strand, within rlmKL at 766.160 kb on + strand, within rlmKL at 766.160 kb on + strand, within rlmKL at 766.161 kb on - strand, within rlmKL at 766.161 kb on - strand, within rlmKL at 766.161 kb on - strand, within rlmKL at 766.266 kb on - strand, within rlmKL at 766.574 kb on + strand, within rlmKL at 766.574 kb on + strand, within rlmKL at 766.574 kb on + strand, within rlmKL at 766.575 kb on - strand, within rlmKL
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 764,161 + OKGIIK_03425 0.74 -0.7 764,236 + OKGIIK_03425 0.83 -0.2 764,236 + OKGIIK_03425 0.83 +1.1 764,237 - OKGIIK_03425 0.83 -1.2 764,237 - OKGIIK_03425 0.83 +1.1 764,237 - OKGIIK_03425 0.83 +2.5 764,408 + -0.7 764,408 + +0.9 764,408 + +1.2 764,408 + +0.1 764,408 + -1.5 764,409 - +0.3 764,754 - OKGIIK_03430 0.63 -0.8 764,754 - OKGIIK_03430 0.63 +0.6 764,783 + OKGIIK_03430 0.68 -0.7 764,783 + OKGIIK_03430 0.68 -1.5 764,783 + OKGIIK_03430 0.68 -0.5 764,783 + OKGIIK_03430 0.68 +0.6 764,783 + OKGIIK_03430 0.68 -1.8 764,783 + OKGIIK_03430 0.68 -0.3 764,783 + OKGIIK_03430 0.68 -1.5 764,783 + OKGIIK_03430 0.68 +0.1 764,783 + OKGIIK_03430 0.68 -1.8 764,784 - OKGIIK_03430 0.68 -0.9 764,784 - OKGIIK_03430 0.68 -0.9 764,784 - OKGIIK_03430 0.68 -0.7 764,784 - OKGIIK_03430 0.68 -0.7 764,784 - OKGIIK_03430 0.68 -1.5 764,784 - OKGIIK_03430 0.68 -0.9 764,784 - OKGIIK_03430 0.68 -1.8 764,784 - OKGIIK_03430 0.68 -0.7 764,784 - OKGIIK_03430 0.68 -1.4 764,784 - OKGIIK_03430 0.68 -0.4 764,786 + OKGIIK_03430 0.68 -0.7 764,786 + OKGIIK_03430 0.68 -0.7 764,786 + OKGIIK_03430 0.68 -0.4 764,786 + OKGIIK_03430 0.68 -0.7 764,787 - OKGIIK_03430 0.68 -1.2 764,787 - OKGIIK_03430 0.68 -0.9 764,787 - OKGIIK_03430 0.68 -1.4 764,928 - -1.4 764,928 - -0.4 764,928 - -2.1 764,928 - -0.4 764,928 - -1.7 765,008 + +0.5 765,008 + -1.5 765,009 - +0.6 765,009 - +0.3 765,009 - +0.9 765,009 - -0.4 765,009 - -1.2 765,166 - OKGIIK_03435 0.22 +0.1 765,166 - OKGIIK_03435 0.22 -0.7 765,363 + OKGIIK_03435 0.59 +0.3 765,524 + OKGIIK_03435 0.90 +0.1 765,524 + OKGIIK_03435 0.90 +0.6 765,524 + OKGIIK_03435 0.90 +0.5 765,524 + OKGIIK_03435 0.90 -1.5 765,524 + OKGIIK_03435 0.90 +0.6 765,524 + OKGIIK_03435 0.90 +1.1 765,525 - OKGIIK_03435 0.90 +0.1 765,525 - OKGIIK_03435 0.90 +0.3 765,525 - OKGIIK_03435 0.90 -0.4 765,525 - OKGIIK_03435 0.90 -0.3 765,525 - OKGIIK_03435 0.90 -0.4 765,525 - OKGIIK_03435 0.90 -0.5 765,525 - OKGIIK_03435 0.90 -0.6 765,629 + -0.3 765,630 - -0.7 765,630 - +1.4 765,630 - -0.3 765,630 - -1.5 765,630 - +0.6 765,630 - -0.9 765,630 - -0.7 765,630 - +0.5 765,630 - -0.7 765,630 - +0.7 765,630 - +0.5 765,722 + +0.1 765,722 + +1.1 765,806 + rlmKL OKGIIK_03440 0.10 +1.4 766,017 + rlmKL OKGIIK_03440 0.20 +0.1 766,017 + rlmKL OKGIIK_03440 0.20 +0.6 766,017 + rlmKL OKGIIK_03440 0.20 +1.4 766,017 + rlmKL OKGIIK_03440 0.20 -1.4 766,017 + rlmKL OKGIIK_03440 0.20 -1.5 766,018 - rlmKL OKGIIK_03440 0.20 -1.9 766,018 - rlmKL OKGIIK_03440 0.20 +0.2 766,018 - rlmKL OKGIIK_03440 0.20 +2.0 766,018 - rlmKL OKGIIK_03440 0.20 -0.2 766,160 + rlmKL OKGIIK_03440 0.27 -0.4 766,160 + rlmKL OKGIIK_03440 0.27 +0.1 766,160 + rlmKL OKGIIK_03440 0.27 +0.6 766,160 + rlmKL OKGIIK_03440 0.27 +0.4 766,161 - rlmKL OKGIIK_03440 0.27 -0.1 766,161 - rlmKL OKGIIK_03440 0.27 -1.5 766,161 - rlmKL OKGIIK_03440 0.27 -1.7 766,266 - rlmKL OKGIIK_03440 0.31 -0.9 766,574 + rlmKL OKGIIK_03440 0.45 -0.4 766,574 + rlmKL OKGIIK_03440 0.45 -0.8 766,574 + rlmKL OKGIIK_03440 0.45 -0.4 766,575 - rlmKL OKGIIK_03440 0.45 +0.6
Or see this region's nucleotide sequence