Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03315 and OKGIIK_03320 overlap by 4 nucleotides OKGIIK_03320 and OKGIIK_03325 are separated by 192 nucleotides OKGIIK_03325 and citB are separated by 105 nucleotides citB and OKGIIK_03335 are separated by 233 nucleotides
OKGIIK_03315: OKGIIK_03315 - hypothetical protein, at 744,561 to 744,824
_03315
OKGIIK_03320: OKGIIK_03320 - GNAT family N-acetyltransferase, at 744,821 to 745,441
_03320
OKGIIK_03325: OKGIIK_03325 - two-component sensor histidine kinase, at 745,634 to 746,857
_03325
OKGIIK_03330: citB - DNA-binding response regulator, at 746,963 to 747,604
citB
OKGIIK_03335: OKGIIK_03335 - Polyketide cyclase, at 747,838 to 749,190
_03335
Position (kb) 745
746
747 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 744.634 kb on - strand, within OKGIIK_03315 at 744.634 kb on - strand, within OKGIIK_03315 at 744.634 kb on - strand, within OKGIIK_03315 at 744.759 kb on + strand, within OKGIIK_03315 at 744.760 kb on - strand, within OKGIIK_03315 at 745.029 kb on + strand, within OKGIIK_03320 at 745.030 kb on - strand, within OKGIIK_03320 at 745.030 kb on - strand, within OKGIIK_03320 at 745.114 kb on - strand, within OKGIIK_03320 at 745.131 kb on + strand, within OKGIIK_03320 at 745.228 kb on - strand, within OKGIIK_03320 at 745.228 kb on - strand, within OKGIIK_03320 at 745.327 kb on - strand, within OKGIIK_03320 at 745.332 kb on + strand, within OKGIIK_03320 at 745.395 kb on - strand at 745.395 kb on - strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.548 kb on + strand at 745.549 kb on - strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.692 kb on - strand at 745.692 kb on - strand at 745.790 kb on + strand, within OKGIIK_03325 at 745.790 kb on + strand, within OKGIIK_03325 at 745.790 kb on + strand, within OKGIIK_03325 at 745.790 kb on + strand, within OKGIIK_03325 at 745.790 kb on + strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.911 kb on - strand, within OKGIIK_03325 at 745.911 kb on - strand, within OKGIIK_03325 at 745.911 kb on - strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 746.051 kb on + strand, within OKGIIK_03325 at 746.051 kb on + strand, within OKGIIK_03325 at 746.051 kb on + strand, within OKGIIK_03325 at 746.052 kb on - strand, within OKGIIK_03325 at 746.052 kb on - strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.570 kb on - strand, within OKGIIK_03325 at 746.616 kb on - strand, within OKGIIK_03325 at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 747.263 kb on + strand, within citB at 747.464 kb on + strand, within citB at 747.465 kb on - strand, within citB at 747.508 kb on + strand, within citB at 747.508 kb on + strand, within citB at 747.509 kb on - strand, within citB at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.807 kb on - strand at 747.807 kb on - strand at 747.807 kb on - strand at 747.813 kb on + strand at 747.813 kb on + strand at 747.813 kb on + strand at 747.813 kb on + strand at 747.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 744,634 - OKGIIK_03315 0.28 +1.8 744,634 - OKGIIK_03315 0.28 +1.2 744,634 - OKGIIK_03315 0.28 -1.5 744,759 + OKGIIK_03315 0.75 -0.2 744,760 - OKGIIK_03315 0.75 -2.1 745,029 + OKGIIK_03320 0.33 -0.6 745,030 - OKGIIK_03320 0.34 -1.9 745,030 - OKGIIK_03320 0.34 +0.5 745,114 - OKGIIK_03320 0.47 -0.7 745,131 + OKGIIK_03320 0.50 -1.2 745,228 - OKGIIK_03320 0.66 -0.5 745,228 - OKGIIK_03320 0.66 +1.2 745,327 - OKGIIK_03320 0.81 -1.2 745,332 + OKGIIK_03320 0.82 -1.8 745,395 - -1.2 745,395 - -1.4 745,527 + -0.7 745,527 + +0.1 745,527 + +0.1 745,527 + +0.9 745,527 + +0.5 745,527 + -0.6 745,527 + -1.5 745,527 + -0.4 745,527 + -0.4 745,528 - -2.3 745,528 - -2.7 745,528 - -0.8 745,528 - -0.2 745,528 - -0.5 745,528 - -0.8 745,528 - -0.9 745,528 - -1.8 745,528 - +1.2 745,528 - -0.4 745,548 + -0.0 745,549 - -1.3 745,691 + -0.2 745,691 + -0.1 745,691 + +0.9 745,691 + +0.9 745,691 + -0.7 745,691 + -0.4 745,691 + -0.1 745,691 + -0.9 745,692 - +0.4 745,692 - +0.4 745,790 + OKGIIK_03325 0.13 +0.2 745,790 + OKGIIK_03325 0.13 +2.2 745,790 + OKGIIK_03325 0.13 -0.7 745,790 + OKGIIK_03325 0.13 -0.4 745,790 + OKGIIK_03325 0.13 -0.8 745,791 - OKGIIK_03325 0.13 +0.3 745,791 - OKGIIK_03325 0.13 +1.0 745,791 - OKGIIK_03325 0.13 +0.8 745,791 - OKGIIK_03325 0.13 +0.3 745,791 - OKGIIK_03325 0.13 +0.4 745,811 + OKGIIK_03325 0.14 +1.2 745,811 + OKGIIK_03325 0.14 +0.5 745,811 + OKGIIK_03325 0.14 -0.3 745,811 + OKGIIK_03325 0.14 -1.4 745,811 + OKGIIK_03325 0.14 -1.5 745,811 + OKGIIK_03325 0.14 -1.9 745,811 + OKGIIK_03325 0.14 -1.2 745,811 + OKGIIK_03325 0.14 +0.3 745,811 + OKGIIK_03325 0.14 +1.4 745,811 + OKGIIK_03325 0.14 -0.4 745,811 + OKGIIK_03325 0.14 +1.0 745,811 + OKGIIK_03325 0.14 -0.9 745,811 + OKGIIK_03325 0.14 -0.2 745,811 + OKGIIK_03325 0.14 -1.2 745,811 + OKGIIK_03325 0.14 -0.7 745,812 - OKGIIK_03325 0.15 +0.3 745,812 - OKGIIK_03325 0.15 -1.1 745,812 - OKGIIK_03325 0.15 -0.9 745,812 - OKGIIK_03325 0.15 -1.5 745,812 - OKGIIK_03325 0.15 -0.8 745,812 - OKGIIK_03325 0.15 +0.9 745,812 - OKGIIK_03325 0.15 +0.1 745,910 + OKGIIK_03325 0.23 +0.5 745,910 + OKGIIK_03325 0.23 -0.7 745,910 + OKGIIK_03325 0.23 +1.4 745,910 + OKGIIK_03325 0.23 -3.4 745,910 + OKGIIK_03325 0.23 +0.2 745,910 + OKGIIK_03325 0.23 -0.2 745,911 - OKGIIK_03325 0.23 +0.1 745,911 - OKGIIK_03325 0.23 -0.2 745,911 - OKGIIK_03325 0.23 -0.9 745,938 + OKGIIK_03325 0.25 +1.2 745,938 + OKGIIK_03325 0.25 +0.2 745,938 + OKGIIK_03325 0.25 +0.1 745,938 + OKGIIK_03325 0.25 +0.6 745,938 + OKGIIK_03325 0.25 +0.2 745,938 + OKGIIK_03325 0.25 +1.6 745,938 + OKGIIK_03325 0.25 -0.9 745,938 + OKGIIK_03325 0.25 -1.2 745,938 + OKGIIK_03325 0.25 -0.5 745,938 + OKGIIK_03325 0.25 -0.1 745,939 - OKGIIK_03325 0.25 -1.9 745,939 - OKGIIK_03325 0.25 -0.7 745,939 - OKGIIK_03325 0.25 -1.7 745,939 - OKGIIK_03325 0.25 -2.2 745,939 - OKGIIK_03325 0.25 +0.8 745,939 - OKGIIK_03325 0.25 +1.2 745,939 - OKGIIK_03325 0.25 -0.6 746,051 + OKGIIK_03325 0.34 -0.4 746,051 + OKGIIK_03325 0.34 +1.0 746,051 + OKGIIK_03325 0.34 +1.3 746,052 - OKGIIK_03325 0.34 +0.2 746,052 - OKGIIK_03325 0.34 -1.5 746,093 + OKGIIK_03325 0.38 -0.9 746,093 + OKGIIK_03325 0.38 -0.2 746,093 + OKGIIK_03325 0.38 -0.7 746,093 + OKGIIK_03325 0.38 -0.7 746,093 + OKGIIK_03325 0.38 +0.3 746,093 + OKGIIK_03325 0.38 +2.0 746,093 + OKGIIK_03325 0.38 -0.9 746,094 - OKGIIK_03325 0.38 -1.2 746,094 - OKGIIK_03325 0.38 +1.1 746,094 - OKGIIK_03325 0.38 +0.6 746,094 - OKGIIK_03325 0.38 +0.6 746,094 - OKGIIK_03325 0.38 -0.9 746,094 - OKGIIK_03325 0.38 +0.6 746,094 - OKGIIK_03325 0.38 +0.6 746,094 - OKGIIK_03325 0.38 -0.9 746,094 - OKGIIK_03325 0.38 +0.6 746,094 - OKGIIK_03325 0.38 -0.7 746,570 - OKGIIK_03325 0.76 -1.2 746,616 - OKGIIK_03325 0.80 +0.7 746,855 + +0.3 746,855 + -0.2 746,855 + -3.1 746,855 + +0.1 746,855 + +1.5 746,855 + +1.2 746,856 - +0.1 746,856 - -0.3 746,856 - +1.6 746,856 - +0.3 746,856 - -1.1 746,856 - +1.4 746,936 + -0.9 746,936 + -0.5 746,936 + -0.2 746,936 + +0.6 746,936 + +0.2 746,936 + +0.5 746,936 + -0.4 746,936 + +0.6 746,936 + +1.0 746,936 + +1.9 746,936 + +0.6 746,936 + -0.0 746,936 + -0.5 746,936 + -0.3 746,936 + -0.1 746,936 + -1.3 746,936 + +1.0 746,936 + +0.3 746,936 + +1.3 746,936 + -0.5 746,937 - -2.0 746,937 - +0.8 746,937 - -0.2 746,937 - +1.8 746,937 - -0.2 746,937 - +1.3 746,937 - +0.8 746,937 - +0.3 746,937 - +0.1 746,937 - -0.2 746,937 - -0.4 746,937 - -0.4 746,937 - +0.8 746,937 - +0.0 747,263 + citB OKGIIK_03330 0.47 +0.9 747,464 + citB OKGIIK_03330 0.78 -1.4 747,465 - citB OKGIIK_03330 0.78 -0.2 747,508 + citB OKGIIK_03330 0.85 +1.6 747,508 + citB OKGIIK_03330 0.85 +0.3 747,509 - citB OKGIIK_03330 0.85 +0.3 747,710 + -1.4 747,710 + +0.3 747,710 + -0.4 747,710 + -2.5 747,710 + +0.1 747,710 + -2.1 747,710 + -1.8 747,710 + -0.7 747,710 + -1.0 747,710 + +0.5 747,710 + -1.5 747,710 + -0.9 747,710 + -0.8 747,710 + -0.4 747,710 + -0.5 747,710 + -1.2 747,710 + -0.7 747,710 + -0.7 747,710 + -0.9 747,710 + -1.2 747,710 + -0.2 747,710 + -1.9 747,710 + -0.5 747,710 + -1.5 747,710 + -1.3 747,710 + -0.7 747,710 + +0.8 747,710 + -2.2 747,710 + +0.4 747,710 + -1.5 747,710 + -0.2 747,710 + -1.2 747,710 + -1.4 747,710 + -0.7 747,711 - -0.7 747,711 - +0.1 747,711 - -2.0 747,711 - -1.3 747,711 - -0.9 747,711 - -0.4 747,711 - +0.8 747,711 - -0.4 747,711 - -1.5 747,806 + -0.2 747,806 + -0.8 747,806 + -0.4 747,806 + -1.7 747,806 + -0.0 747,806 + -1.2 747,806 + -0.4 747,806 + +0.5 747,806 + -1.4 747,806 + -1.0 747,807 - -0.7 747,807 - -2.2 747,807 - -2.2 747,813 + -0.7 747,813 + -3.9 747,813 + -0.5 747,813 + -1.1 747,814 - -3.4
Or see this region's nucleotide sequence