Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03190 and OKGIIK_03195 overlap by 4 nucleotides OKGIIK_03195 and yjhB are separated by 135 nucleotides yjhB and lplA are separated by 177 nucleotides lplA and OKGIIK_03210 overlap by 4 nucleotides
OKGIIK_03190: OKGIIK_03190 - Peptidase S45, at 722,074 to 724,500
_03190
OKGIIK_03195: OKGIIK_03195 - NAGPA domain-containing protein, at 724,497 to 725,276
_03195
OKGIIK_03200: yjhB - 7,8-dihydro-8-oxoguanine triphosphatase, at 725,412 to 725,900
yjhB
OKGIIK_03205: lplA - lipoate--protein ligase family protein, at 726,078 to 726,854
lplA
OKGIIK_03210: OKGIIK_03210 - Biotin--protein ligase, at 726,851 to 727,141
_03210
Position (kb) 725
726 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 724.531 kb on + strand at 724.532 kb on - strand at 724.564 kb on + strand at 724.564 kb on + strand at 724.564 kb on + strand at 724.564 kb on + strand at 724.565 kb on - strand at 724.582 kb on + strand, within OKGIIK_03195 at 724.582 kb on + strand, within OKGIIK_03195 at 724.582 kb on + strand, within OKGIIK_03195 at 724.582 kb on + strand, within OKGIIK_03195 at 724.582 kb on + strand, within OKGIIK_03195 at 724.582 kb on + strand, within OKGIIK_03195 at 724.582 kb on + strand, within OKGIIK_03195 at 724.582 kb on + strand, within OKGIIK_03195 at 724.583 kb on - strand, within OKGIIK_03195 at 724.583 kb on - strand, within OKGIIK_03195 at 724.583 kb on - strand, within OKGIIK_03195 at 724.583 kb on - strand, within OKGIIK_03195 at 724.583 kb on - strand, within OKGIIK_03195 at 724.583 kb on - strand, within OKGIIK_03195 at 724.583 kb on - strand, within OKGIIK_03195 at 724.583 kb on - strand, within OKGIIK_03195 at 724.583 kb on - strand, within OKGIIK_03195 at 724.609 kb on + strand, within OKGIIK_03195 at 724.609 kb on + strand, within OKGIIK_03195 at 724.609 kb on + strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.610 kb on - strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.840 kb on + strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.841 kb on - strand, within OKGIIK_03195 at 724.879 kb on + strand, within OKGIIK_03195 at 724.879 kb on + strand, within OKGIIK_03195 at 724.879 kb on + strand, within OKGIIK_03195 at 724.978 kb on + strand, within OKGIIK_03195 at 724.978 kb on + strand, within OKGIIK_03195 at 724.978 kb on + strand, within OKGIIK_03195 at 724.978 kb on + strand, within OKGIIK_03195 at 724.978 kb on + strand, within OKGIIK_03195 at 724.978 kb on + strand, within OKGIIK_03195 at 724.979 kb on - strand, within OKGIIK_03195 at 724.979 kb on - strand, within OKGIIK_03195 at 724.979 kb on - strand, within OKGIIK_03195 at 724.979 kb on - strand, within OKGIIK_03195 at 724.979 kb on - strand, within OKGIIK_03195 at 724.979 kb on - strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.008 kb on + strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.009 kb on - strand, within OKGIIK_03195 at 725.161 kb on + strand, within OKGIIK_03195 at 725.161 kb on + strand, within OKGIIK_03195 at 725.161 kb on + strand, within OKGIIK_03195 at 725.161 kb on + strand, within OKGIIK_03195 at 725.162 kb on - strand, within OKGIIK_03195 at 725.162 kb on - strand, within OKGIIK_03195 at 725.162 kb on - strand, within OKGIIK_03195 at 725.162 kb on - strand, within OKGIIK_03195 at 725.381 kb on + strand at 725.418 kb on + strand at 725.418 kb on + strand at 725.418 kb on + strand at 725.418 kb on + strand at 725.418 kb on + strand at 725.418 kb on + strand at 725.419 kb on - strand at 725.445 kb on + strand at 725.445 kb on + strand at 725.445 kb on + strand at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.523 kb on + strand, within yjhB at 725.524 kb on - strand, within yjhB at 725.524 kb on - strand, within yjhB at 725.524 kb on - strand, within yjhB at 725.524 kb on - strand, within yjhB at 725.524 kb on - strand, within yjhB at 725.524 kb on - strand, within yjhB at 725.524 kb on - strand, within yjhB at 725.524 kb on - strand, within yjhB at 725.703 kb on + strand, within yjhB at 725.856 kb on + strand at 725.856 kb on + strand at 725.856 kb on + strand at 725.856 kb on + strand at 725.856 kb on + strand at 725.856 kb on + strand at 725.857 kb on - strand at 725.857 kb on - strand at 725.857 kb on - strand at 725.857 kb on - strand at 725.857 kb on - strand at 725.857 kb on - strand at 725.857 kb on - strand at 725.857 kb on - strand at 725.886 kb on + strand at 725.886 kb on + strand at 725.886 kb on + strand at 725.886 kb on + strand at 725.887 kb on - strand at 725.887 kb on - strand at 725.887 kb on - strand at 725.887 kb on - strand at 726.055 kb on + strand at 726.055 kb on + strand at 726.055 kb on + strand at 726.055 kb on + strand at 726.055 kb on + strand at 726.055 kb on + strand at 726.055 kb on + strand at 726.055 kb on + strand at 726.056 kb on - strand at 726.056 kb on - strand at 726.059 kb on + strand at 726.059 kb on + strand at 726.059 kb on + strand at 726.059 kb on + strand at 726.059 kb on + strand at 726.159 kb on + strand, within lplA at 726.160 kb on - strand, within lplA at 726.160 kb on - strand, within lplA at 726.349 kb on + strand, within lplA at 726.349 kb on + strand, within lplA at 726.349 kb on + strand, within lplA at 726.349 kb on + strand, within lplA at 726.350 kb on - strand, within lplA at 726.350 kb on - strand, within lplA at 726.350 kb on - strand, within lplA at 726.350 kb on - strand, within lplA at 726.350 kb on - strand, within lplA at 726.449 kb on - strand, within lplA at 726.449 kb on - strand, within lplA at 726.508 kb on + strand, within lplA at 726.508 kb on + strand, within lplA at 726.508 kb on + strand, within lplA at 726.508 kb on + strand, within lplA at 726.553 kb on + strand, within lplA at 726.553 kb on + strand, within lplA at 726.553 kb on + strand, within lplA at 726.553 kb on + strand, within lplA at 726.553 kb on + strand, within lplA at 726.554 kb on - strand, within lplA at 726.562 kb on + strand, within lplA at 726.562 kb on + strand, within lplA at 726.563 kb on - strand, within lplA at 726.563 kb on - strand, within lplA at 726.563 kb on - strand, within lplA at 726.563 kb on - strand, within lplA
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 724,531 + -0.9 724,532 - +0.1 724,564 + +1.0 724,564 + -2.0 724,564 + +0.4 724,564 + +1.9 724,565 - +2.2 724,582 + OKGIIK_03195 0.11 -1.2 724,582 + OKGIIK_03195 0.11 -3.0 724,582 + OKGIIK_03195 0.11 -0.8 724,582 + OKGIIK_03195 0.11 -0.3 724,582 + OKGIIK_03195 0.11 +0.5 724,582 + OKGIIK_03195 0.11 -1.3 724,582 + OKGIIK_03195 0.11 -0.4 724,582 + OKGIIK_03195 0.11 +1.6 724,583 - OKGIIK_03195 0.11 -0.8 724,583 - OKGIIK_03195 0.11 -1.2 724,583 - OKGIIK_03195 0.11 +0.1 724,583 - OKGIIK_03195 0.11 +0.3 724,583 - OKGIIK_03195 0.11 -0.3 724,583 - OKGIIK_03195 0.11 +0.4 724,583 - OKGIIK_03195 0.11 -0.7 724,583 - OKGIIK_03195 0.11 +0.3 724,583 - OKGIIK_03195 0.11 +0.0 724,609 + OKGIIK_03195 0.14 +1.2 724,609 + OKGIIK_03195 0.14 +0.7 724,609 + OKGIIK_03195 0.14 -1.7 724,610 - OKGIIK_03195 0.14 -0.4 724,610 - OKGIIK_03195 0.14 -0.5 724,610 - OKGIIK_03195 0.14 +1.2 724,610 - OKGIIK_03195 0.14 +0.6 724,610 - OKGIIK_03195 0.14 +0.2 724,610 - OKGIIK_03195 0.14 +1.1 724,610 - OKGIIK_03195 0.14 +1.8 724,610 - OKGIIK_03195 0.14 +0.5 724,610 - OKGIIK_03195 0.14 -0.5 724,610 - OKGIIK_03195 0.14 +0.6 724,840 + OKGIIK_03195 0.44 +0.6 724,840 + OKGIIK_03195 0.44 -1.0 724,840 + OKGIIK_03195 0.44 +0.8 724,840 + OKGIIK_03195 0.44 -2.1 724,840 + OKGIIK_03195 0.44 -2.4 724,840 + OKGIIK_03195 0.44 -1.0 724,840 + OKGIIK_03195 0.44 -1.3 724,840 + OKGIIK_03195 0.44 -0.6 724,840 + OKGIIK_03195 0.44 +0.5 724,840 + OKGIIK_03195 0.44 -1.6 724,841 - OKGIIK_03195 0.44 +0.2 724,841 - OKGIIK_03195 0.44 +0.5 724,841 - OKGIIK_03195 0.44 +0.0 724,841 - OKGIIK_03195 0.44 +0.6 724,841 - OKGIIK_03195 0.44 +0.3 724,841 - OKGIIK_03195 0.44 +0.9 724,841 - OKGIIK_03195 0.44 +0.8 724,841 - OKGIIK_03195 0.44 +0.6 724,841 - OKGIIK_03195 0.44 -0.5 724,841 - OKGIIK_03195 0.44 +1.8 724,841 - OKGIIK_03195 0.44 -0.9 724,841 - OKGIIK_03195 0.44 +0.0 724,879 + OKGIIK_03195 0.49 +0.0 724,879 + OKGIIK_03195 0.49 +0.3 724,879 + OKGIIK_03195 0.49 -1.3 724,978 + OKGIIK_03195 0.62 +0.6 724,978 + OKGIIK_03195 0.62 -1.2 724,978 + OKGIIK_03195 0.62 +0.6 724,978 + OKGIIK_03195 0.62 -1.0 724,978 + OKGIIK_03195 0.62 +0.2 724,978 + OKGIIK_03195 0.62 -1.4 724,979 - OKGIIK_03195 0.62 -0.7 724,979 - OKGIIK_03195 0.62 -1.4 724,979 - OKGIIK_03195 0.62 -0.4 724,979 - OKGIIK_03195 0.62 +1.3 724,979 - OKGIIK_03195 0.62 +1.4 724,979 - OKGIIK_03195 0.62 +1.9 725,008 + OKGIIK_03195 0.66 -0.1 725,008 + OKGIIK_03195 0.66 -0.4 725,008 + OKGIIK_03195 0.66 -0.2 725,008 + OKGIIK_03195 0.66 -0.3 725,008 + OKGIIK_03195 0.66 +0.7 725,008 + OKGIIK_03195 0.66 +0.5 725,008 + OKGIIK_03195 0.66 -0.7 725,008 + OKGIIK_03195 0.66 -3.0 725,008 + OKGIIK_03195 0.66 -0.2 725,008 + OKGIIK_03195 0.66 +1.3 725,008 + OKGIIK_03195 0.66 -1.3 725,008 + OKGIIK_03195 0.66 -1.5 725,008 + OKGIIK_03195 0.66 -0.9 725,008 + OKGIIK_03195 0.66 +1.6 725,008 + OKGIIK_03195 0.66 -1.1 725,008 + OKGIIK_03195 0.66 -1.2 725,009 - OKGIIK_03195 0.66 -1.8 725,009 - OKGIIK_03195 0.66 +0.7 725,009 - OKGIIK_03195 0.66 +0.8 725,009 - OKGIIK_03195 0.66 +0.8 725,009 - OKGIIK_03195 0.66 +0.7 725,009 - OKGIIK_03195 0.66 -0.8 725,009 - OKGIIK_03195 0.66 +0.4 725,009 - OKGIIK_03195 0.66 +0.2 725,009 - OKGIIK_03195 0.66 +0.4 725,009 - OKGIIK_03195 0.66 +0.6 725,161 + OKGIIK_03195 0.85 -1.4 725,161 + OKGIIK_03195 0.85 -0.4 725,161 + OKGIIK_03195 0.85 -1.5 725,161 + OKGIIK_03195 0.85 -1.7 725,162 - OKGIIK_03195 0.85 -0.1 725,162 - OKGIIK_03195 0.85 +0.7 725,162 - OKGIIK_03195 0.85 -1.0 725,162 - OKGIIK_03195 0.85 +0.6 725,381 + -0.1 725,418 + -2.0 725,418 + -0.4 725,418 + -0.5 725,418 + +0.3 725,418 + -0.4 725,418 + +0.3 725,419 - -0.7 725,445 + -0.0 725,445 + -1.1 725,445 + -1.8 725,523 + yjhB OKGIIK_03200 0.23 +1.1 725,523 + yjhB OKGIIK_03200 0.23 -0.4 725,523 + yjhB OKGIIK_03200 0.23 -1.2 725,523 + yjhB OKGIIK_03200 0.23 +0.6 725,523 + yjhB OKGIIK_03200 0.23 -0.4 725,523 + yjhB OKGIIK_03200 0.23 -0.1 725,523 + yjhB OKGIIK_03200 0.23 -1.4 725,523 + yjhB OKGIIK_03200 0.23 +0.6 725,523 + yjhB OKGIIK_03200 0.23 -1.2 725,523 + yjhB OKGIIK_03200 0.23 -1.7 725,523 + yjhB OKGIIK_03200 0.23 +1.2 725,523 + yjhB OKGIIK_03200 0.23 -1.4 725,523 + yjhB OKGIIK_03200 0.23 +1.4 725,523 + yjhB OKGIIK_03200 0.23 -0.7 725,523 + yjhB OKGIIK_03200 0.23 +0.2 725,523 + yjhB OKGIIK_03200 0.23 +0.5 725,523 + yjhB OKGIIK_03200 0.23 -0.1 725,523 + yjhB OKGIIK_03200 0.23 +0.2 725,523 + yjhB OKGIIK_03200 0.23 +0.3 725,524 - yjhB OKGIIK_03200 0.23 +0.3 725,524 - yjhB OKGIIK_03200 0.23 -1.0 725,524 - yjhB OKGIIK_03200 0.23 +0.3 725,524 - yjhB OKGIIK_03200 0.23 +0.8 725,524 - yjhB OKGIIK_03200 0.23 -1.2 725,524 - yjhB OKGIIK_03200 0.23 -0.8 725,524 - yjhB OKGIIK_03200 0.23 -0.9 725,524 - yjhB OKGIIK_03200 0.23 +0.0 725,703 + yjhB OKGIIK_03200 0.60 -1.0 725,856 + -0.2 725,856 + -1.3 725,856 + -2.5 725,856 + -0.6 725,856 + +0.4 725,856 + +0.5 725,857 - -0.6 725,857 - -1.2 725,857 - +1.4 725,857 - -1.4 725,857 - -1.4 725,857 - +1.2 725,857 - +0.0 725,857 - -0.2 725,886 + +1.2 725,886 + -1.0 725,886 + +0.9 725,886 + -1.0 725,887 - +0.3 725,887 - +0.8 725,887 - -1.5 725,887 - +1.2 726,055 + -1.8 726,055 + -0.8 726,055 + -1.4 726,055 + -0.1 726,055 + -0.7 726,055 + -1.0 726,055 + -1.4 726,055 + -0.4 726,056 - +0.1 726,056 - +1.2 726,059 + +0.1 726,059 + -0.7 726,059 + -0.5 726,059 + -1.0 726,059 + -1.6 726,159 + lplA OKGIIK_03205 0.10 -0.4 726,160 - lplA OKGIIK_03205 0.11 -0.1 726,160 - lplA OKGIIK_03205 0.11 -0.5 726,349 + lplA OKGIIK_03205 0.35 +1.2 726,349 + lplA OKGIIK_03205 0.35 -1.2 726,349 + lplA OKGIIK_03205 0.35 -0.7 726,349 + lplA OKGIIK_03205 0.35 -2.5 726,350 - lplA OKGIIK_03205 0.35 -0.9 726,350 - lplA OKGIIK_03205 0.35 -1.0 726,350 - lplA OKGIIK_03205 0.35 -0.2 726,350 - lplA OKGIIK_03205 0.35 -0.6 726,350 - lplA OKGIIK_03205 0.35 -0.6 726,449 - lplA OKGIIK_03205 0.48 -0.5 726,449 - lplA OKGIIK_03205 0.48 -2.0 726,508 + lplA OKGIIK_03205 0.55 -1.0 726,508 + lplA OKGIIK_03205 0.55 +0.0 726,508 + lplA OKGIIK_03205 0.55 -0.2 726,508 + lplA OKGIIK_03205 0.55 -0.0 726,553 + lplA OKGIIK_03205 0.61 -0.4 726,553 + lplA OKGIIK_03205 0.61 -0.1 726,553 + lplA OKGIIK_03205 0.61 +0.4 726,553 + lplA OKGIIK_03205 0.61 -1.0 726,553 + lplA OKGIIK_03205 0.61 +0.2 726,554 - lplA OKGIIK_03205 0.61 +0.0 726,562 + lplA OKGIIK_03205 0.62 +0.2 726,562 + lplA OKGIIK_03205 0.62 +0.2 726,563 - lplA OKGIIK_03205 0.62 +0.2 726,563 - lplA OKGIIK_03205 0.62 -0.9 726,563 - lplA OKGIIK_03205 0.62 -0.4 726,563 - lplA OKGIIK_03205 0.62 +0.4
Or see this region's nucleotide sequence