Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02975 and OKGIIK_02980 overlap by 4 nucleotides OKGIIK_02980 and OKGIIK_02985 overlap by 4 nucleotides OKGIIK_02985 and miaB are separated by 146 nucleotides
OKGIIK_02975: OKGIIK_02975 - Hemolysin secretion protein D, at 677,102 to 678,073
_02975
OKGIIK_02980: OKGIIK_02980 - ABC transporter ATP-binding protein, at 678,070 to 679,029
_02980
OKGIIK_02985: OKGIIK_02985 - ABC transporter, at 679,026 to 680,135
_02985
OKGIIK_02990: miaB - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 680,282 to 681,673
miaB
Position (kb) 679
680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 678.181 kb on + strand, within OKGIIK_02980 at 678.182 kb on - strand, within OKGIIK_02980 at 678.182 kb on - strand, within OKGIIK_02980 at 678.182 kb on - strand, within OKGIIK_02980 at 678.325 kb on + strand, within OKGIIK_02980 at 678.325 kb on + strand, within OKGIIK_02980 at 678.325 kb on + strand, within OKGIIK_02980 at 678.325 kb on + strand, within OKGIIK_02980 at 678.325 kb on + strand, within OKGIIK_02980 at 678.325 kb on + strand, within OKGIIK_02980 at 678.451 kb on + strand, within OKGIIK_02980 at 678.451 kb on + strand, within OKGIIK_02980 at 678.451 kb on + strand, within OKGIIK_02980 at 678.451 kb on + strand, within OKGIIK_02980 at 678.451 kb on + strand, within OKGIIK_02980 at 678.451 kb on + strand, within OKGIIK_02980 at 678.451 kb on + strand, within OKGIIK_02980 at 678.451 kb on + strand, within OKGIIK_02980 at 678.452 kb on - strand, within OKGIIK_02980 at 678.452 kb on - strand, within OKGIIK_02980 at 678.452 kb on - strand, within OKGIIK_02980 at 678.452 kb on - strand, within OKGIIK_02980 at 678.452 kb on - strand, within OKGIIK_02980 at 678.452 kb on - strand, within OKGIIK_02980 at 678.452 kb on - strand, within OKGIIK_02980 at 678.452 kb on - strand, within OKGIIK_02980 at 678.858 kb on + strand, within OKGIIK_02980 at 678.859 kb on - strand, within OKGIIK_02980 at 679.114 kb on + strand at 679.115 kb on - strand at 679.115 kb on - strand at 679.115 kb on - strand at 679.144 kb on - strand, within OKGIIK_02985 at 679.271 kb on + strand, within OKGIIK_02985 at 679.521 kb on + strand, within OKGIIK_02985 at 679.521 kb on + strand, within OKGIIK_02985 at 679.521 kb on + strand, within OKGIIK_02985 at 679.521 kb on + strand, within OKGIIK_02985 at 679.521 kb on + strand, within OKGIIK_02985 at 679.522 kb on - strand, within OKGIIK_02985 at 679.522 kb on - strand, within OKGIIK_02985 at 679.704 kb on + strand, within OKGIIK_02985 at 679.704 kb on + strand, within OKGIIK_02985 at 679.704 kb on + strand, within OKGIIK_02985 at 679.704 kb on + strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.705 kb on - strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.797 kb on + strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 679.798 kb on - strand, within OKGIIK_02985 at 680.107 kb on + strand at 680.186 kb on + strand at 680.186 kb on + strand at 680.196 kb on + strand at 680.196 kb on + strand at 680.196 kb on + strand at 680.196 kb on + strand at 680.196 kb on + strand at 680.196 kb on + strand at 680.196 kb on + strand at 680.196 kb on + strand at 680.197 kb on - strand at 680.197 kb on - strand at 680.197 kb on - strand at 680.197 kb on - strand at 680.197 kb on - strand at 680.400 kb on + strand at 680.401 kb on - strand at 680.785 kb on - strand, within miaB at 680.785 kb on - strand, within miaB at 680.785 kb on - strand, within miaB at 680.785 kb on - strand, within miaB at 680.785 kb on - strand, within miaB at 680.844 kb on + strand, within miaB at 680.844 kb on + strand, within miaB at 680.844 kb on + strand, within miaB at 680.844 kb on + strand, within miaB at 680.844 kb on + strand, within miaB at 680.844 kb on + strand, within miaB at 680.844 kb on + strand, within miaB at 680.844 kb on + strand, within miaB at 680.845 kb on - strand, within miaB at 680.845 kb on - strand, within miaB at 680.845 kb on - strand, within miaB at 680.845 kb on - strand, within miaB at 680.845 kb on - strand, within miaB at 680.845 kb on - strand, within miaB at 680.871 kb on + strand, within miaB at 680.871 kb on + strand, within miaB at 680.871 kb on + strand, within miaB at 680.871 kb on + strand, within miaB at 680.871 kb on + strand, within miaB at 680.872 kb on - strand, within miaB at 680.872 kb on - strand, within miaB at 680.982 kb on + strand, within miaB at 680.983 kb on - strand, within miaB at 680.983 kb on - strand, within miaB at 680.983 kb on - strand, within miaB at 681.042 kb on + strand, within miaB
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 678,181 + OKGIIK_02980 0.12 +0.8 678,182 - OKGIIK_02980 0.12 -0.3 678,182 - OKGIIK_02980 0.12 +0.6 678,182 - OKGIIK_02980 0.12 +0.2 678,325 + OKGIIK_02980 0.27 +0.8 678,325 + OKGIIK_02980 0.27 +1.0 678,325 + OKGIIK_02980 0.27 +2.2 678,325 + OKGIIK_02980 0.27 +1.1 678,325 + OKGIIK_02980 0.27 -1.4 678,325 + OKGIIK_02980 0.27 -0.4 678,451 + OKGIIK_02980 0.40 -0.4 678,451 + OKGIIK_02980 0.40 -2.0 678,451 + OKGIIK_02980 0.40 +0.2 678,451 + OKGIIK_02980 0.40 -1.7 678,451 + OKGIIK_02980 0.40 +1.2 678,451 + OKGIIK_02980 0.40 -0.8 678,451 + OKGIIK_02980 0.40 -1.5 678,451 + OKGIIK_02980 0.40 +1.4 678,452 - OKGIIK_02980 0.40 -0.6 678,452 - OKGIIK_02980 0.40 -0.7 678,452 - OKGIIK_02980 0.40 -0.5 678,452 - OKGIIK_02980 0.40 -1.1 678,452 - OKGIIK_02980 0.40 +0.5 678,452 - OKGIIK_02980 0.40 +1.3 678,452 - OKGIIK_02980 0.40 +0.6 678,452 - OKGIIK_02980 0.40 +0.8 678,858 + OKGIIK_02980 0.82 -0.7 678,859 - OKGIIK_02980 0.82 -0.7 679,114 + -0.5 679,115 - +0.8 679,115 - -1.4 679,115 - +0.9 679,144 - OKGIIK_02985 0.11 -1.0 679,271 + OKGIIK_02985 0.22 -1.2 679,521 + OKGIIK_02985 0.45 -1.5 679,521 + OKGIIK_02985 0.45 -0.9 679,521 + OKGIIK_02985 0.45 -1.0 679,521 + OKGIIK_02985 0.45 +0.9 679,521 + OKGIIK_02985 0.45 +0.2 679,522 - OKGIIK_02985 0.45 +1.9 679,522 - OKGIIK_02985 0.45 +0.3 679,704 + OKGIIK_02985 0.61 +2.1 679,704 + OKGIIK_02985 0.61 -0.7 679,704 + OKGIIK_02985 0.61 -1.0 679,704 + OKGIIK_02985 0.61 -1.3 679,705 - OKGIIK_02985 0.61 -0.4 679,705 - OKGIIK_02985 0.61 -0.8 679,705 - OKGIIK_02985 0.61 +0.0 679,705 - OKGIIK_02985 0.61 +0.3 679,705 - OKGIIK_02985 0.61 +0.0 679,705 - OKGIIK_02985 0.61 -0.7 679,705 - OKGIIK_02985 0.61 -0.4 679,705 - OKGIIK_02985 0.61 -1.0 679,705 - OKGIIK_02985 0.61 +0.5 679,705 - OKGIIK_02985 0.61 +0.9 679,705 - OKGIIK_02985 0.61 -0.2 679,705 - OKGIIK_02985 0.61 +0.0 679,705 - OKGIIK_02985 0.61 -0.7 679,705 - OKGIIK_02985 0.61 +1.3 679,705 - OKGIIK_02985 0.61 -0.7 679,705 - OKGIIK_02985 0.61 -0.2 679,705 - OKGIIK_02985 0.61 +0.9 679,705 - OKGIIK_02985 0.61 +1.1 679,797 + OKGIIK_02985 0.69 +0.3 679,797 + OKGIIK_02985 0.69 +1.2 679,797 + OKGIIK_02985 0.69 +0.3 679,797 + OKGIIK_02985 0.69 +0.2 679,797 + OKGIIK_02985 0.69 -2.5 679,797 + OKGIIK_02985 0.69 -0.4 679,797 + OKGIIK_02985 0.69 -1.1 679,797 + OKGIIK_02985 0.69 -1.8 679,797 + OKGIIK_02985 0.69 -0.2 679,797 + OKGIIK_02985 0.69 -1.8 679,797 + OKGIIK_02985 0.69 -1.8 679,797 + OKGIIK_02985 0.69 -0.6 679,798 - OKGIIK_02985 0.70 -1.4 679,798 - OKGIIK_02985 0.70 -0.4 679,798 - OKGIIK_02985 0.70 +0.0 679,798 - OKGIIK_02985 0.70 +1.6 679,798 - OKGIIK_02985 0.70 +1.0 679,798 - OKGIIK_02985 0.70 -1.7 679,798 - OKGIIK_02985 0.70 +1.1 679,798 - OKGIIK_02985 0.70 +0.2 679,798 - OKGIIK_02985 0.70 -3.1 679,798 - OKGIIK_02985 0.70 -0.3 679,798 - OKGIIK_02985 0.70 -1.0 680,107 + +1.9 680,186 + -2.0 680,186 + -0.4 680,196 + -2.1 680,196 + -1.5 680,196 + -0.4 680,196 + -0.7 680,196 + +1.6 680,196 + -0.7 680,196 + -0.3 680,196 + +0.2 680,197 - +0.5 680,197 - -0.2 680,197 - -0.5 680,197 - -0.1 680,197 - -0.2 680,400 + -1.0 680,401 - -1.4 680,785 - miaB OKGIIK_02990 0.36 -1.0 680,785 - miaB OKGIIK_02990 0.36 -1.5 680,785 - miaB OKGIIK_02990 0.36 -2.5 680,785 - miaB OKGIIK_02990 0.36 +0.3 680,785 - miaB OKGIIK_02990 0.36 +0.6 680,844 + miaB OKGIIK_02990 0.40 +0.9 680,844 + miaB OKGIIK_02990 0.40 +1.2 680,844 + miaB OKGIIK_02990 0.40 +0.0 680,844 + miaB OKGIIK_02990 0.40 -0.3 680,844 + miaB OKGIIK_02990 0.40 -1.4 680,844 + miaB OKGIIK_02990 0.40 +1.4 680,844 + miaB OKGIIK_02990 0.40 -1.3 680,844 + miaB OKGIIK_02990 0.40 -1.0 680,845 - miaB OKGIIK_02990 0.40 +0.3 680,845 - miaB OKGIIK_02990 0.40 -1.5 680,845 - miaB OKGIIK_02990 0.40 +0.6 680,845 - miaB OKGIIK_02990 0.40 +0.3 680,845 - miaB OKGIIK_02990 0.40 -0.7 680,845 - miaB OKGIIK_02990 0.40 +0.6 680,871 + miaB OKGIIK_02990 0.42 -0.1 680,871 + miaB OKGIIK_02990 0.42 -0.5 680,871 + miaB OKGIIK_02990 0.42 -1.8 680,871 + miaB OKGIIK_02990 0.42 -0.2 680,871 + miaB OKGIIK_02990 0.42 -0.1 680,872 - miaB OKGIIK_02990 0.42 -1.0 680,872 - miaB OKGIIK_02990 0.42 +0.3 680,982 + miaB OKGIIK_02990 0.50 -2.9 680,983 - miaB OKGIIK_02990 0.50 -1.7 680,983 - miaB OKGIIK_02990 0.50 -0.5 680,983 - miaB OKGIIK_02990 0.50 -0.5 681,042 + miaB OKGIIK_02990 0.55 +2.6
Or see this region's nucleotide sequence