Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliP and fliQ are separated by 763 nucleotides fliQ and fliR overlap by 4 nucleotides fliR and flhB are separated by 5 nucleotides
OKGIIK_02795: fliP - flagellar type III secretion system pore protein FliP, at 644,116 to 644,862
fliP
OKGIIK_02800: fliQ - flagellar biosynthesis protein FliQ, at 645,626 to 645,895
fliQ
OKGIIK_02805: fliR - flagellar biosynthetic protein FliR, at 645,892 to 646,662
fliR
OKGIIK_02810: flhB - flagellar biosynthesis protein FlhB, at 646,668 to 647,804
flhB
Position (kb) 645
646 Strain fitness (log2 ratio) -2
-1
0
1
2 at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.854 kb on + strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.855 kb on - strand at 644.890 kb on + strand at 644.890 kb on + strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 644.891 kb on - strand at 645.198 kb on - strand at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.668 kb on + strand, within fliQ at 645.669 kb on - strand, within fliQ at 645.669 kb on - strand, within fliQ at 645.669 kb on - strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.851 kb on + strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 645.852 kb on - strand, within fliQ at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.273 kb on + strand, within fliR at 646.274 kb on - strand, within fliR at 646.274 kb on - strand, within fliR at 646.274 kb on - strand, within fliR at 646.274 kb on - strand, within fliR at 646.274 kb on - strand, within fliR at 646.274 kb on - strand, within fliR at 646.274 kb on - strand, within fliR at 646.866 kb on + strand, within flhB at 646.867 kb on - strand, within flhB at 646.867 kb on - strand, within flhB
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 644,854 + -0.3 644,854 + -0.4 644,854 + +0.5 644,854 + -1.2 644,854 + -2.4 644,855 - +0.3 644,855 - +0.4 644,855 - -1.3 644,855 - -0.4 644,855 - -1.5 644,855 - +0.0 644,855 - -0.0 644,855 - -1.2 644,890 + -2.0 644,890 + -1.0 644,891 - +1.0 644,891 - -0.6 644,891 - +0.6 644,891 - +1.0 644,891 - -0.1 644,891 - +0.1 644,891 - +0.0 645,198 - -1.0 645,668 + fliQ OKGIIK_02800 0.16 +1.4 645,668 + fliQ OKGIIK_02800 0.16 -0.5 645,668 + fliQ OKGIIK_02800 0.16 +0.2 645,668 + fliQ OKGIIK_02800 0.16 +1.4 645,668 + fliQ OKGIIK_02800 0.16 -1.8 645,668 + fliQ OKGIIK_02800 0.16 -0.1 645,668 + fliQ OKGIIK_02800 0.16 +0.2 645,668 + fliQ OKGIIK_02800 0.16 +0.5 645,668 + fliQ OKGIIK_02800 0.16 -0.1 645,668 + fliQ OKGIIK_02800 0.16 -0.8 645,668 + fliQ OKGIIK_02800 0.16 +0.3 645,668 + fliQ OKGIIK_02800 0.16 -1.2 645,669 - fliQ OKGIIK_02800 0.16 +0.1 645,669 - fliQ OKGIIK_02800 0.16 +1.6 645,669 - fliQ OKGIIK_02800 0.16 +0.8 645,851 + fliQ OKGIIK_02800 0.83 -0.1 645,851 + fliQ OKGIIK_02800 0.83 +1.4 645,851 + fliQ OKGIIK_02800 0.83 -0.7 645,851 + fliQ OKGIIK_02800 0.83 -0.1 645,851 + fliQ OKGIIK_02800 0.83 -0.8 645,851 + fliQ OKGIIK_02800 0.83 -1.3 645,851 + fliQ OKGIIK_02800 0.83 -0.5 645,851 + fliQ OKGIIK_02800 0.83 +0.3 645,851 + fliQ OKGIIK_02800 0.83 +1.0 645,851 + fliQ OKGIIK_02800 0.83 +0.9 645,851 + fliQ OKGIIK_02800 0.83 -0.8 645,851 + fliQ OKGIIK_02800 0.83 -1.2 645,851 + fliQ OKGIIK_02800 0.83 +1.2 645,851 + fliQ OKGIIK_02800 0.83 -0.8 645,851 + fliQ OKGIIK_02800 0.83 -1.6 645,852 - fliQ OKGIIK_02800 0.84 -1.1 645,852 - fliQ OKGIIK_02800 0.84 -0.4 645,852 - fliQ OKGIIK_02800 0.84 -1.4 645,852 - fliQ OKGIIK_02800 0.84 +0.8 645,852 - fliQ OKGIIK_02800 0.84 +1.6 645,852 - fliQ OKGIIK_02800 0.84 -1.2 645,852 - fliQ OKGIIK_02800 0.84 -1.4 645,852 - fliQ OKGIIK_02800 0.84 -1.4 645,852 - fliQ OKGIIK_02800 0.84 +0.3 645,852 - fliQ OKGIIK_02800 0.84 +0.7 645,852 - fliQ OKGIIK_02800 0.84 -1.0 645,852 - fliQ OKGIIK_02800 0.84 +0.4 646,273 + fliR OKGIIK_02805 0.49 -0.7 646,273 + fliR OKGIIK_02805 0.49 -0.1 646,273 + fliR OKGIIK_02805 0.49 -0.7 646,273 + fliR OKGIIK_02805 0.49 +1.8 646,273 + fliR OKGIIK_02805 0.49 -1.2 646,273 + fliR OKGIIK_02805 0.49 -0.6 646,273 + fliR OKGIIK_02805 0.49 -0.7 646,273 + fliR OKGIIK_02805 0.49 -1.6 646,273 + fliR OKGIIK_02805 0.49 -0.7 646,273 + fliR OKGIIK_02805 0.49 -0.1 646,273 + fliR OKGIIK_02805 0.49 +0.1 646,274 - fliR OKGIIK_02805 0.50 -0.5 646,274 - fliR OKGIIK_02805 0.50 +1.1 646,274 - fliR OKGIIK_02805 0.50 -1.0 646,274 - fliR OKGIIK_02805 0.50 +0.2 646,274 - fliR OKGIIK_02805 0.50 -2.0 646,274 - fliR OKGIIK_02805 0.50 +1.2 646,274 - fliR OKGIIK_02805 0.50 -1.0 646,866 + flhB OKGIIK_02810 0.17 +0.2 646,867 - flhB OKGIIK_02810 0.18 +0.1 646,867 - flhB OKGIIK_02810 0.18 +1.1
Or see this region's nucleotide sequence