Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yceI and OKGIIK_01590 overlap by 1 nucleotides OKGIIK_01590 and OKGIIK_01595 overlap by 4 nucleotides OKGIIK_01595 and ispA are separated by 919 nucleotides
OKGIIK_01585: yceI - polyisoprenoid-binding protein, at 360,120 to 360,668
yceI
OKGIIK_01590: OKGIIK_01590 - cytochrome B, at 360,668 to 361,246
_01590
OKGIIK_01595: OKGIIK_01595 - Polyisoprenoid-binding protein, at 361,243 to 361,818
_01595
OKGIIK_01600: ispA - octaprenyl-diphosphate synthase, at 362,738 to 363,742
ispA
Position (kb) 361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 360.505 kb on + strand, within yceI at 360.505 kb on + strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.506 kb on - strand, within yceI at 360.576 kb on + strand, within yceI at 360.576 kb on + strand, within yceI at 360.576 kb on + strand, within yceI at 360.576 kb on + strand, within yceI at 360.576 kb on + strand, within yceI at 360.577 kb on - strand, within yceI at 360.577 kb on - strand, within yceI at 360.577 kb on - strand, within yceI at 360.577 kb on - strand, within yceI at 360.604 kb on + strand, within yceI at 360.604 kb on + strand, within yceI at 360.604 kb on + strand, within yceI at 360.604 kb on + strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.605 kb on - strand, within yceI at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.814 kb on - strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.960 kb on + strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 360.961 kb on - strand, within OKGIIK_01590 at 361.409 kb on + strand, within OKGIIK_01595 at 361.544 kb on + strand, within OKGIIK_01595 at 361.545 kb on - strand, within OKGIIK_01595 at 361.545 kb on - strand, within OKGIIK_01595 at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 362.026 kb on + strand at 362.026 kb on + strand at 362.026 kb on + strand at 362.026 kb on + strand at 362.027 kb on - strand at 362.027 kb on - strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x remove 360,505 + yceI OKGIIK_01585 0.70 +0.2 360,505 + yceI OKGIIK_01585 0.70 -2.6 360,506 - yceI OKGIIK_01585 0.70 +0.6 360,506 - yceI OKGIIK_01585 0.70 -1.0 360,506 - yceI OKGIIK_01585 0.70 -0.5 360,506 - yceI OKGIIK_01585 0.70 -3.3 360,506 - yceI OKGIIK_01585 0.70 -0.1 360,506 - yceI OKGIIK_01585 0.70 +0.3 360,576 + yceI OKGIIK_01585 0.83 +0.4 360,576 + yceI OKGIIK_01585 0.83 -0.9 360,576 + yceI OKGIIK_01585 0.83 +0.8 360,576 + yceI OKGIIK_01585 0.83 -1.5 360,576 + yceI OKGIIK_01585 0.83 -0.4 360,577 - yceI OKGIIK_01585 0.83 -1.2 360,577 - yceI OKGIIK_01585 0.83 -1.0 360,577 - yceI OKGIIK_01585 0.83 -1.2 360,577 - yceI OKGIIK_01585 0.83 +0.9 360,604 + yceI OKGIIK_01585 0.88 -0.4 360,604 + yceI OKGIIK_01585 0.88 -0.5 360,604 + yceI OKGIIK_01585 0.88 +1.3 360,604 + yceI OKGIIK_01585 0.88 -1.2 360,605 - yceI OKGIIK_01585 0.88 -1.7 360,605 - yceI OKGIIK_01585 0.88 -1.0 360,605 - yceI OKGIIK_01585 0.88 -1.0 360,605 - yceI OKGIIK_01585 0.88 +0.9 360,605 - yceI OKGIIK_01585 0.88 -0.2 360,605 - yceI OKGIIK_01585 0.88 -1.6 360,605 - yceI OKGIIK_01585 0.88 -0.4 360,814 - OKGIIK_01590 0.25 -1.0 360,814 - OKGIIK_01590 0.25 -0.3 360,814 - OKGIIK_01590 0.25 -0.5 360,814 - OKGIIK_01590 0.25 +0.5 360,814 - OKGIIK_01590 0.25 -1.8 360,814 - OKGIIK_01590 0.25 +0.6 360,814 - OKGIIK_01590 0.25 +0.0 360,960 + OKGIIK_01590 0.50 -0.1 360,960 + OKGIIK_01590 0.50 +1.4 360,960 + OKGIIK_01590 0.50 +0.5 360,960 + OKGIIK_01590 0.50 -0.5 360,960 + OKGIIK_01590 0.50 +1.9 360,960 + OKGIIK_01590 0.50 +1.3 360,960 + OKGIIK_01590 0.50 -0.4 360,960 + OKGIIK_01590 0.50 -0.4 360,960 + OKGIIK_01590 0.50 -0.8 360,960 + OKGIIK_01590 0.50 -1.8 360,961 - OKGIIK_01590 0.51 -0.1 360,961 - OKGIIK_01590 0.51 -2.5 360,961 - OKGIIK_01590 0.51 +0.8 360,961 - OKGIIK_01590 0.51 +0.3 360,961 - OKGIIK_01590 0.51 +1.3 360,961 - OKGIIK_01590 0.51 +0.9 360,961 - OKGIIK_01590 0.51 +0.0 360,961 - OKGIIK_01590 0.51 -1.5 360,961 - OKGIIK_01590 0.51 +0.0 360,961 - OKGIIK_01590 0.51 -1.2 360,961 - OKGIIK_01590 0.51 -1.1 360,961 - OKGIIK_01590 0.51 +1.0 360,961 - OKGIIK_01590 0.51 -0.6 360,961 - OKGIIK_01590 0.51 -1.3 361,409 + OKGIIK_01595 0.29 +1.0 361,544 + OKGIIK_01595 0.52 -0.5 361,545 - OKGIIK_01595 0.52 +0.6 361,545 - OKGIIK_01595 0.52 -0.4 361,966 + +0.6 361,966 + -1.2 361,966 + +0.6 361,966 + +0.1 361,966 + -0.4 361,966 + -0.1 361,966 + +0.5 361,966 + +0.7 361,966 + -2.0 361,966 + -0.6 361,966 + +0.9 361,966 + -0.2 361,966 + +0.0 361,966 + -0.7 361,967 - +1.6 361,967 - -0.6 361,967 - +0.5 361,967 - +0.9 361,967 - -1.0 361,967 - +0.6 361,967 - +1.2 361,967 - +2.0 361,967 - -0.9 361,967 - +0.2 362,026 + +1.0 362,026 + -0.1 362,026 + -0.5 362,026 + +0.4 362,027 - -1.0 362,027 - -0.5 362,716 + -1.3 362,716 + -0.6 362,716 + -0.4 362,716 + -0.4 362,716 + -1.8 362,716 + +0.8 362,716 + +0.6 362,716 + +0.9 362,716 + +0.4 362,716 + -0.7 362,717 - +0.7
Or see this region's nucleotide sequence