Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00810

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 2 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemN and crp are separated by 32 nucleotidescrp and OKGIIK_00810 are separated by 30 nucleotidesOKGIIK_00810 and OKGIIK_00815 are separated by 33 nucleotidesOKGIIK_00815 and OKGIIK_00820 are separated by 141 nucleotides OKGIIK_00800: hemN - oxygen-independent coproporphyrinogen III oxidase, at 177,712 to 179,112 hemN OKGIIK_00805: crp - cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases, at 179,145 to 179,906 crp OKGIIK_00810: OKGIIK_00810 - Universal stress protein UspA, at 179,937 to 180,782 _00810 OKGIIK_00815: OKGIIK_00815 - GNAT family acetyltransferase, at 180,816 to 181,388 _00815 OKGIIK_00820: OKGIIK_00820 - CRP-like protein Clp, at 181,530 to 182,294 _00820 Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 179.040 kb on + strandat 179.040 kb on + strandat 179.041 kb on - strandat 179.041 kb on - strandat 179.041 kb on - strandat 179.041 kb on - strandat 179.065 kb on + strandat 179.065 kb on + strandat 179.065 kb on + strandat 179.065 kb on + strandat 179.065 kb on + strandat 179.065 kb on + strandat 179.066 kb on - strandat 179.066 kb on - strandat 179.066 kb on - strandat 179.066 kb on - strandat 179.066 kb on - strandat 179.095 kb on + strandat 179.095 kb on + strandat 179.157 kb on + strandat 179.158 kb on - strandat 179.228 kb on + strand, within crpat 179.228 kb on + strand, within crpat 179.229 kb on - strand, within crpat 179.229 kb on - strand, within crpat 179.229 kb on - strand, within crpat 179.229 kb on - strand, within crpat 179.442 kb on + strand, within crpat 179.442 kb on + strand, within crpat 179.442 kb on + strand, within crpat 179.443 kb on - strand, within crpat 179.443 kb on - strand, within crpat 179.443 kb on - strand, within crpat 179.443 kb on - strand, within crpat 179.443 kb on - strand, within crpat 179.478 kb on + strand, within crpat 179.478 kb on + strand, within crpat 179.479 kb on - strand, within crpat 179.698 kb on - strand, within crpat 179.763 kb on + strand, within crpat 179.763 kb on + strand, within crpat 179.763 kb on + strand, within crpat 179.763 kb on + strand, within crpat 179.763 kb on + strand, within crpat 179.763 kb on + strand, within crpat 179.763 kb on + strand, within crpat 179.763 kb on + strand, within crpat 179.763 kb on + strand, within crpat 179.764 kb on - strand, within crpat 179.764 kb on - strand, within crpat 179.764 kb on - strand, within crpat 179.764 kb on - strand, within crpat 179.764 kb on - strand, within crpat 179.764 kb on - strand, within crpat 179.764 kb on - strand, within crpat 179.905 kb on - strandat 180.028 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.115 kb on + strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.116 kb on - strand, within OKGIIK_00810at 180.152 kb on - strand, within OKGIIK_00810at 180.883 kb on + strand, within OKGIIK_00815at 180.883 kb on + strand, within OKGIIK_00815at 180.883 kb on + strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 180.884 kb on - strand, within OKGIIK_00815at 181.066 kb on + strand, within OKGIIK_00815at 181.066 kb on + strand, within OKGIIK_00815at 181.067 kb on - strand, within OKGIIK_00815at 181.067 kb on - strand, within OKGIIK_00815at 181.278 kb on + strand, within OKGIIK_00815at 181.278 kb on + strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.279 kb on - strand, within OKGIIK_00815at 181.285 kb on - strand, within OKGIIK_00815at 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.635 kb on + strand, within OKGIIK_00820at 181.635 kb on + strand, within OKGIIK_00820at 181.636 kb on - strand, within OKGIIK_00820at 181.636 kb on - strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.696 kb on + strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.697 kb on - strand, within OKGIIK_00820at 181.712 kb on - strand, within OKGIIK_00820

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 2 x
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179,040 + -1.2
179,040 + +1.4
179,041 - -0.8
179,041 - -0.5
179,041 - +1.2
179,041 - +0.5
179,065 + -0.7
179,065 + +0.5
179,065 + -1.4
179,065 + +0.8
179,065 + +0.6
179,065 + -0.0
179,066 - +0.1
179,066 - +0.6
179,066 - +0.2
179,066 - -0.4
179,066 - -1.7
179,095 + +1.0
179,095 + -0.4
179,157 + +2.2
179,158 - -0.7
179,228 + crp OKGIIK_00805 0.11 -2.1
179,228 + crp OKGIIK_00805 0.11 +0.3
179,229 - crp OKGIIK_00805 0.11 -0.2
179,229 - crp OKGIIK_00805 0.11 -0.2
179,229 - crp OKGIIK_00805 0.11 -1.3
179,229 - crp OKGIIK_00805 0.11 +1.5
179,442 + crp OKGIIK_00805 0.39 +1.2
179,442 + crp OKGIIK_00805 0.39 -1.7
179,442 + crp OKGIIK_00805 0.39 -0.7
179,443 - crp OKGIIK_00805 0.39 -0.5
179,443 - crp OKGIIK_00805 0.39 -0.7
179,443 - crp OKGIIK_00805 0.39 -0.4
179,443 - crp OKGIIK_00805 0.39 -1.7
179,443 - crp OKGIIK_00805 0.39 +1.3
179,478 + crp OKGIIK_00805 0.44 +2.4
179,478 + crp OKGIIK_00805 0.44 -1.5
179,479 - crp OKGIIK_00805 0.44 +0.6
179,698 - crp OKGIIK_00805 0.73 -0.2
179,763 + crp OKGIIK_00805 0.81 -1.4
179,763 + crp OKGIIK_00805 0.81 -0.5
179,763 + crp OKGIIK_00805 0.81 +0.1
179,763 + crp OKGIIK_00805 0.81 +0.1
179,763 + crp OKGIIK_00805 0.81 -0.5
179,763 + crp OKGIIK_00805 0.81 -0.7
179,763 + crp OKGIIK_00805 0.81 +0.9
179,763 + crp OKGIIK_00805 0.81 -1.9
179,763 + crp OKGIIK_00805 0.81 +0.6
179,764 - crp OKGIIK_00805 0.81 +0.9
179,764 - crp OKGIIK_00805 0.81 -1.9
179,764 - crp OKGIIK_00805 0.81 -1.5
179,764 - crp OKGIIK_00805 0.81 -1.7
179,764 - crp OKGIIK_00805 0.81 -0.7
179,764 - crp OKGIIK_00805 0.81 +0.1
179,764 - crp OKGIIK_00805 0.81 -0.1
179,905 - -0.8
180,028 + OKGIIK_00810 0.11 -1.2
180,115 + OKGIIK_00810 0.21 -2.1
180,115 + OKGIIK_00810 0.21 -2.0
180,115 + OKGIIK_00810 0.21 +0.1
180,115 + OKGIIK_00810 0.21 +0.9
180,115 + OKGIIK_00810 0.21 -0.4
180,115 + OKGIIK_00810 0.21 +1.8
180,115 + OKGIIK_00810 0.21 -0.4
180,115 + OKGIIK_00810 0.21 +0.6
180,115 + OKGIIK_00810 0.21 -2.0
180,115 + OKGIIK_00810 0.21 +0.3
180,115 + OKGIIK_00810 0.21 +0.1
180,115 + OKGIIK_00810 0.21 +0.4
180,116 - OKGIIK_00810 0.21 -0.5
180,116 - OKGIIK_00810 0.21 -0.4
180,116 - OKGIIK_00810 0.21 +0.4
180,116 - OKGIIK_00810 0.21 +1.5
180,152 - OKGIIK_00810 0.25 +0.3
180,883 + OKGIIK_00815 0.12 +1.6
180,883 + OKGIIK_00815 0.12 -0.3
180,883 + OKGIIK_00815 0.12 +0.5
180,884 - OKGIIK_00815 0.12 +1.0
180,884 - OKGIIK_00815 0.12 -0.9
180,884 - OKGIIK_00815 0.12 -0.8
181,066 + OKGIIK_00815 0.44 -0.4
181,066 + OKGIIK_00815 0.44 +1.1
181,067 - OKGIIK_00815 0.44 -1.2
181,067 - OKGIIK_00815 0.44 +0.2
181,278 + OKGIIK_00815 0.81 -1.9
181,278 + OKGIIK_00815 0.81 -0.2
181,279 - OKGIIK_00815 0.81 -2.4
181,279 - OKGIIK_00815 0.81 -0.7
181,279 - OKGIIK_00815 0.81 +1.6
181,279 - OKGIIK_00815 0.81 +0.6
181,285 - OKGIIK_00815 0.82 -0.4
181,477 + -1.7
181,477 + +2.0
181,477 + -0.0
181,477 + -0.8
181,477 + -0.6
181,477 + -0.6
181,478 - -0.3
181,478 - -0.4
181,478 - +0.4
181,478 - -0.5
181,478 - -0.7
181,635 + OKGIIK_00820 0.14 -0.8
181,635 + OKGIIK_00820 0.14 -1.7
181,636 - OKGIIK_00820 0.14 +0.6
181,636 - OKGIIK_00820 0.14 -0.1
181,696 + OKGIIK_00820 0.22 -1.8
181,696 + OKGIIK_00820 0.22 +0.9
181,696 + OKGIIK_00820 0.22 +0.8
181,696 + OKGIIK_00820 0.22 -0.5
181,697 - OKGIIK_00820 0.22 +0.1
181,697 - OKGIIK_00820 0.22 +1.3
181,697 - OKGIIK_00820 0.22 -0.7
181,697 - OKGIIK_00820 0.22 -0.4
181,712 - OKGIIK_00820 0.24 -0.7

Or see this region's nucleotide sequence