Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06906 and MPMX19_06907 are separated by 58 nucleotides MPMX19_06907 and MPMX19_06908 are separated by 359 nucleotides
MPMX19_06906: MPMX19_06906 - Acetyl-CoA:oxalate CoA-transferase, at 180,819 to 182,033
_06906
MPMX19_06907: MPMX19_06907 - L-talarate/galactarate dehydratase, at 182,092 to 183,267
_06907
MPMX19_06908: MPMX19_06908 - Leu/Ile/Val-binding protein, at 183,627 to 184,835
_06908
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 181.203 kb on + strand, within MPMX19_06906 at 181.203 kb on + strand, within MPMX19_06906 at 181.203 kb on + strand, within MPMX19_06906 at 181.203 kb on + strand, within MPMX19_06906 at 181.203 kb on + strand, within MPMX19_06906 at 181.203 kb on + strand, within MPMX19_06906 at 181.203 kb on + strand, within MPMX19_06906 at 181.204 kb on - strand, within MPMX19_06906 at 181.204 kb on - strand, within MPMX19_06906 at 181.288 kb on + strand, within MPMX19_06906 at 181.288 kb on + strand, within MPMX19_06906 at 181.288 kb on + strand, within MPMX19_06906 at 181.289 kb on - strand, within MPMX19_06906 at 181.468 kb on + strand, within MPMX19_06906 at 181.468 kb on + strand, within MPMX19_06906 at 181.468 kb on + strand, within MPMX19_06906 at 181.468 kb on + strand, within MPMX19_06906 at 181.468 kb on + strand, within MPMX19_06906 at 181.468 kb on + strand, within MPMX19_06906 at 181.469 kb on - strand, within MPMX19_06906 at 181.469 kb on - strand, within MPMX19_06906 at 181.630 kb on + strand, within MPMX19_06906 at 181.630 kb on + strand, within MPMX19_06906 at 181.630 kb on + strand, within MPMX19_06906 at 181.630 kb on + strand, within MPMX19_06906 at 181.631 kb on - strand, within MPMX19_06906 at 181.631 kb on - strand, within MPMX19_06906 at 181.631 kb on - strand, within MPMX19_06906 at 181.631 kb on - strand, within MPMX19_06906 at 181.631 kb on - strand, within MPMX19_06906 at 181.666 kb on + strand, within MPMX19_06906 at 181.666 kb on + strand, within MPMX19_06906 at 181.667 kb on - strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.813 kb on + strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.814 kb on - strand, within MPMX19_06906 at 181.816 kb on + strand, within MPMX19_06906 at 181.816 kb on + strand, within MPMX19_06906 at 181.816 kb on + strand, within MPMX19_06906 at 181.816 kb on + strand, within MPMX19_06906 at 181.817 kb on - strand, within MPMX19_06906 at 181.817 kb on - strand, within MPMX19_06906 at 181.817 kb on - strand, within MPMX19_06906 at 181.817 kb on - strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.837 kb on + strand, within MPMX19_06906 at 181.838 kb on - strand, within MPMX19_06906 at 181.838 kb on - strand, within MPMX19_06906 at 181.838 kb on - strand, within MPMX19_06906 at 182.046 kb on + strand at 182.047 kb on - strand at 182.047 kb on - strand at 182.047 kb on - strand at 182.351 kb on + strand, within MPMX19_06907 at 182.351 kb on + strand, within MPMX19_06907 at 182.352 kb on - strand, within MPMX19_06907 at 182.432 kb on + strand, within MPMX19_06907 at 182.432 kb on + strand, within MPMX19_06907 at 182.433 kb on - strand, within MPMX19_06907 at 182.433 kb on - strand, within MPMX19_06907 at 182.780 kb on + strand, within MPMX19_06907 at 182.780 kb on + strand, within MPMX19_06907 at 182.781 kb on - strand, within MPMX19_06907 at 182.781 kb on - strand, within MPMX19_06907 at 182.781 kb on - strand, within MPMX19_06907 at 182.820 kb on - strand, within MPMX19_06907 at 182.820 kb on - strand, within MPMX19_06907 at 183.044 kb on + strand, within MPMX19_06907 at 183.607 kb on + strand at 183.611 kb on + strand at 183.611 kb on + strand at 183.611 kb on + strand at 183.612 kb on - strand at 183.612 kb on - strand at 183.612 kb on - strand at 183.864 kb on - strand, within MPMX19_06908 at 183.864 kb on - strand, within MPMX19_06908 at 184.072 kb on - strand, within MPMX19_06908 at 184.132 kb on - strand, within MPMX19_06908 at 184.188 kb on + strand, within MPMX19_06908 at 184.251 kb on + strand, within MPMX19_06908 at 184.251 kb on + strand, within MPMX19_06908 at 184.251 kb on + strand, within MPMX19_06908 at 184.251 kb on + strand, within MPMX19_06908 at 184.252 kb on - strand, within MPMX19_06908 at 184.252 kb on - strand, within MPMX19_06908 at 184.252 kb on - strand, within MPMX19_06908
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 181,203 + MPMX19_06906 0.32 -0.3 181,203 + MPMX19_06906 0.32 -0.5 181,203 + MPMX19_06906 0.32 -1.5 181,203 + MPMX19_06906 0.32 +0.1 181,203 + MPMX19_06906 0.32 +0.2 181,203 + MPMX19_06906 0.32 -1.5 181,203 + MPMX19_06906 0.32 -1.5 181,204 - MPMX19_06906 0.32 -0.6 181,204 - MPMX19_06906 0.32 +0.8 181,288 + MPMX19_06906 0.39 -0.1 181,288 + MPMX19_06906 0.39 -0.3 181,288 + MPMX19_06906 0.39 -0.5 181,289 - MPMX19_06906 0.39 -0.6 181,468 + MPMX19_06906 0.53 -1.6 181,468 + MPMX19_06906 0.53 -1.4 181,468 + MPMX19_06906 0.53 -0.3 181,468 + MPMX19_06906 0.53 -1.2 181,468 + MPMX19_06906 0.53 +0.1 181,468 + MPMX19_06906 0.53 +1.5 181,469 - MPMX19_06906 0.53 -1.1 181,469 - MPMX19_06906 0.53 +0.5 181,630 + MPMX19_06906 0.67 -1.2 181,630 + MPMX19_06906 0.67 -0.3 181,630 + MPMX19_06906 0.67 +0.2 181,630 + MPMX19_06906 0.67 -0.9 181,631 - MPMX19_06906 0.67 +0.7 181,631 - MPMX19_06906 0.67 -0.2 181,631 - MPMX19_06906 0.67 -0.4 181,631 - MPMX19_06906 0.67 -0.9 181,631 - MPMX19_06906 0.67 -0.0 181,666 + MPMX19_06906 0.70 +0.3 181,666 + MPMX19_06906 0.70 +0.3 181,667 - MPMX19_06906 0.70 +1.8 181,813 + MPMX19_06906 0.82 +0.0 181,813 + MPMX19_06906 0.82 +0.9 181,813 + MPMX19_06906 0.82 -1.0 181,813 + MPMX19_06906 0.82 -1.2 181,813 + MPMX19_06906 0.82 -0.1 181,813 + MPMX19_06906 0.82 -0.8 181,813 + MPMX19_06906 0.82 -0.3 181,813 + MPMX19_06906 0.82 +0.5 181,813 + MPMX19_06906 0.82 -0.6 181,813 + MPMX19_06906 0.82 -0.6 181,814 - MPMX19_06906 0.82 -0.9 181,814 - MPMX19_06906 0.82 -0.8 181,814 - MPMX19_06906 0.82 -1.8 181,814 - MPMX19_06906 0.82 -0.2 181,814 - MPMX19_06906 0.82 -1.8 181,814 - MPMX19_06906 0.82 +0.6 181,814 - MPMX19_06906 0.82 -1.1 181,814 - MPMX19_06906 0.82 +0.5 181,814 - MPMX19_06906 0.82 -0.7 181,814 - MPMX19_06906 0.82 +0.1 181,816 + MPMX19_06906 0.82 -0.5 181,816 + MPMX19_06906 0.82 +0.4 181,816 + MPMX19_06906 0.82 -0.5 181,816 + MPMX19_06906 0.82 -2.9 181,817 - MPMX19_06906 0.82 -0.5 181,817 - MPMX19_06906 0.82 +1.0 181,817 - MPMX19_06906 0.82 -1.9 181,817 - MPMX19_06906 0.82 -0.8 181,837 + MPMX19_06906 0.84 +1.3 181,837 + MPMX19_06906 0.84 -1.0 181,837 + MPMX19_06906 0.84 +0.7 181,837 + MPMX19_06906 0.84 -0.8 181,837 + MPMX19_06906 0.84 -1.4 181,837 + MPMX19_06906 0.84 -2.4 181,837 + MPMX19_06906 0.84 -0.5 181,837 + MPMX19_06906 0.84 +0.7 181,837 + MPMX19_06906 0.84 -0.4 181,837 + MPMX19_06906 0.84 -0.9 181,838 - MPMX19_06906 0.84 +0.3 181,838 - MPMX19_06906 0.84 +1.5 181,838 - MPMX19_06906 0.84 +0.0 182,046 + -0.3 182,047 - -1.2 182,047 - -0.1 182,047 - -0.5 182,351 + MPMX19_06907 0.22 -1.3 182,351 + MPMX19_06907 0.22 +0.5 182,352 - MPMX19_06907 0.22 -0.3 182,432 + MPMX19_06907 0.29 -1.1 182,432 + MPMX19_06907 0.29 -0.7 182,433 - MPMX19_06907 0.29 -2.2 182,433 - MPMX19_06907 0.29 -2.3 182,780 + MPMX19_06907 0.59 -0.5 182,780 + MPMX19_06907 0.59 -0.3 182,781 - MPMX19_06907 0.59 +0.1 182,781 - MPMX19_06907 0.59 +0.5 182,781 - MPMX19_06907 0.59 +0.2 182,820 - MPMX19_06907 0.62 -0.6 182,820 - MPMX19_06907 0.62 -1.4 183,044 + MPMX19_06907 0.81 -2.5 183,607 + +0.7 183,611 + +0.4 183,611 + -0.6 183,611 + +0.5 183,612 - -1.9 183,612 - +1.2 183,612 - -0.5 183,864 - MPMX19_06908 0.20 +0.8 183,864 - MPMX19_06908 0.20 -0.1 184,072 - MPMX19_06908 0.37 -1.1 184,132 - MPMX19_06908 0.42 +1.1 184,188 + MPMX19_06908 0.46 -1.1 184,251 + MPMX19_06908 0.52 +0.2 184,251 + MPMX19_06908 0.52 -0.6 184,251 + MPMX19_06908 0.52 +0.3 184,251 + MPMX19_06908 0.52 +0.5 184,252 - MPMX19_06908 0.52 -0.8 184,252 - MPMX19_06908 0.52 -1.8 184,252 - MPMX19_06908 0.52 -0.9
Or see this region's nucleotide sequence