Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06825 and MPMX19_06826 are separated by 137 nucleotides MPMX19_06826 and MPMX19_06827 are separated by 2 nucleotides
MPMX19_06825: MPMX19_06825 - hypothetical protein, at 90,595 to 91,443
_06825
MPMX19_06826: MPMX19_06826 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 91,581 to 92,615
_06826
MPMX19_06827: MPMX19_06827 - Ectoine hydrolase, at 92,618 to 93,817
_06827
Position (kb)
91
92
93 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 90.770 kb on + strand, within MPMX19_06825 at 90.770 kb on + strand, within MPMX19_06825 at 90.771 kb on - strand, within MPMX19_06825 at 90.771 kb on - strand, within MPMX19_06825 at 90.771 kb on - strand, within MPMX19_06825 at 90.863 kb on + strand, within MPMX19_06825 at 90.863 kb on + strand, within MPMX19_06825 at 90.863 kb on + strand, within MPMX19_06825 at 90.864 kb on - strand, within MPMX19_06825 at 90.864 kb on - strand, within MPMX19_06825 at 90.864 kb on - strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.025 kb on + strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.026 kb on - strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.097 kb on + strand, within MPMX19_06825 at 91.098 kb on - strand, within MPMX19_06825 at 91.098 kb on - strand, within MPMX19_06825 at 91.098 kb on - strand, within MPMX19_06825 at 91.191 kb on - strand, within MPMX19_06825 at 91.298 kb on + strand, within MPMX19_06825 at 91.298 kb on + strand, within MPMX19_06825 at 91.299 kb on - strand, within MPMX19_06825 at 91.299 kb on - strand, within MPMX19_06825 at 91.299 kb on - strand, within MPMX19_06825 at 92.020 kb on + strand, within MPMX19_06826 at 92.020 kb on + strand, within MPMX19_06826 at 92.020 kb on + strand, within MPMX19_06826 at 92.020 kb on + strand, within MPMX19_06826 at 92.020 kb on + strand, within MPMX19_06826 at 92.020 kb on + strand, within MPMX19_06826 at 92.020 kb on + strand, within MPMX19_06826 at 92.021 kb on - strand, within MPMX19_06826 at 92.021 kb on - strand, within MPMX19_06826 at 92.021 kb on - strand, within MPMX19_06826 at 92.021 kb on - strand, within MPMX19_06826 at 92.059 kb on + strand, within MPMX19_06826 at 92.059 kb on + strand, within MPMX19_06826 at 92.059 kb on + strand, within MPMX19_06826 at 92.059 kb on + strand, within MPMX19_06826 at 92.059 kb on + strand, within MPMX19_06826 at 92.060 kb on - strand, within MPMX19_06826 at 92.060 kb on - strand, within MPMX19_06826 at 92.060 kb on - strand, within MPMX19_06826 at 92.218 kb on + strand, within MPMX19_06826 at 92.218 kb on + strand, within MPMX19_06826 at 92.218 kb on + strand, within MPMX19_06826 at 92.218 kb on + strand, within MPMX19_06826 at 92.218 kb on + strand, within MPMX19_06826 at 92.218 kb on + strand, within MPMX19_06826 at 92.327 kb on - strand, within MPMX19_06826 at 92.416 kb on + strand, within MPMX19_06826 at 92.416 kb on + strand, within MPMX19_06826 at 92.416 kb on + strand, within MPMX19_06826 at 92.417 kb on - strand, within MPMX19_06826 at 92.417 kb on - strand, within MPMX19_06826 at 92.417 kb on - strand, within MPMX19_06826 at 92.417 kb on - strand, within MPMX19_06826 at 92.417 kb on - strand, within MPMX19_06826 at 92.524 kb on + strand at 92.710 kb on + strand at 92.817 kb on + strand, within MPMX19_06827 at 92.817 kb on + strand, within MPMX19_06827 at 92.865 kb on + strand, within MPMX19_06827 at 93.030 kb on + strand, within MPMX19_06827 at 93.030 kb on + strand, within MPMX19_06827 at 93.030 kb on + strand, within MPMX19_06827 at 93.031 kb on - strand, within MPMX19_06827 at 93.031 kb on - strand, within MPMX19_06827 at 93.040 kb on - strand, within MPMX19_06827 at 93.040 kb on - strand, within MPMX19_06827 at 93.040 kb on - strand, within MPMX19_06827 at 93.157 kb on - strand, within MPMX19_06827 at 93.216 kb on + strand, within MPMX19_06827 at 93.217 kb on - strand, within MPMX19_06827 at 93.217 kb on - strand, within MPMX19_06827 at 93.217 kb on - strand, within MPMX19_06827 at 93.217 kb on - strand, within MPMX19_06827 at 93.217 kb on - strand, within MPMX19_06827 at 93.315 kb on + strand, within MPMX19_06827 at 93.315 kb on + strand, within MPMX19_06827 at 93.315 kb on + strand, within MPMX19_06827 at 93.315 kb on + strand, within MPMX19_06827 at 93.315 kb on + strand, within MPMX19_06827 at 93.315 kb on + strand, within MPMX19_06827 at 93.316 kb on - strand, within MPMX19_06827 at 93.316 kb on - strand, within MPMX19_06827 at 93.316 kb on - strand, within MPMX19_06827 at 93.316 kb on - strand, within MPMX19_06827 at 93.316 kb on - strand, within MPMX19_06827 at 93.414 kb on + strand, within MPMX19_06827 at 93.415 kb on - strand, within MPMX19_06827 at 93.415 kb on - strand, within MPMX19_06827 at 93.435 kb on + strand, within MPMX19_06827 at 93.435 kb on + strand, within MPMX19_06827 at 93.435 kb on + strand, within MPMX19_06827 at 93.435 kb on + strand, within MPMX19_06827 at 93.436 kb on - strand, within MPMX19_06827 at 93.436 kb on - strand, within MPMX19_06827 at 93.436 kb on - strand, within MPMX19_06827 at 93.436 kb on - strand, within MPMX19_06827 at 93.534 kb on + strand, within MPMX19_06827 at 93.534 kb on + strand, within MPMX19_06827 at 93.534 kb on + strand, within MPMX19_06827 at 93.534 kb on + strand, within MPMX19_06827 at 93.534 kb on + strand, within MPMX19_06827 at 93.535 kb on - strand, within MPMX19_06827 at 93.535 kb on - strand, within MPMX19_06827 at 93.535 kb on - strand, within MPMX19_06827 at 93.535 kb on - strand, within MPMX19_06827 at 93.535 kb on - strand, within MPMX19_06827 at 93.573 kb on + strand, within MPMX19_06827
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 90,770 + MPMX19_06825 0.21 -2.6 90,770 + MPMX19_06825 0.21 -0.9 90,771 - MPMX19_06825 0.21 -0.8 90,771 - MPMX19_06825 0.21 -1.5 90,771 - MPMX19_06825 0.21 +0.7 90,863 + MPMX19_06825 0.32 +0.3 90,863 + MPMX19_06825 0.32 -1.9 90,863 + MPMX19_06825 0.32 +0.7 90,864 - MPMX19_06825 0.32 +0.6 90,864 - MPMX19_06825 0.32 +0.5 90,864 - MPMX19_06825 0.32 +0.7 91,025 + MPMX19_06825 0.51 -1.5 91,025 + MPMX19_06825 0.51 -1.1 91,025 + MPMX19_06825 0.51 +0.9 91,025 + MPMX19_06825 0.51 +1.9 91,025 + MPMX19_06825 0.51 +1.0 91,026 - MPMX19_06825 0.51 +0.9 91,026 - MPMX19_06825 0.51 +0.2 91,026 - MPMX19_06825 0.51 -0.7 91,026 - MPMX19_06825 0.51 -2.4 91,026 - MPMX19_06825 0.51 -0.6 91,026 - MPMX19_06825 0.51 +0.2 91,026 - MPMX19_06825 0.51 +0.5 91,097 + MPMX19_06825 0.59 +0.2 91,097 + MPMX19_06825 0.59 +1.1 91,097 + MPMX19_06825 0.59 +0.3 91,097 + MPMX19_06825 0.59 -1.9 91,097 + MPMX19_06825 0.59 -1.1 91,098 - MPMX19_06825 0.59 -0.2 91,098 - MPMX19_06825 0.59 +0.1 91,098 - MPMX19_06825 0.59 -1.3 91,191 - MPMX19_06825 0.70 -0.2 91,298 + MPMX19_06825 0.83 +0.5 91,298 + MPMX19_06825 0.83 -0.1 91,299 - MPMX19_06825 0.83 -0.4 91,299 - MPMX19_06825 0.83 -1.0 91,299 - MPMX19_06825 0.83 -0.2 92,020 + MPMX19_06826 0.42 -3.1 92,020 + MPMX19_06826 0.42 -0.5 92,020 + MPMX19_06826 0.42 -1.0 92,020 + MPMX19_06826 0.42 -0.1 92,020 + MPMX19_06826 0.42 +0.1 92,020 + MPMX19_06826 0.42 -2.3 92,020 + MPMX19_06826 0.42 -0.9 92,021 - MPMX19_06826 0.43 -2.1 92,021 - MPMX19_06826 0.43 -0.5 92,021 - MPMX19_06826 0.43 -0.2 92,021 - MPMX19_06826 0.43 -0.5 92,059 + MPMX19_06826 0.46 -0.1 92,059 + MPMX19_06826 0.46 -0.9 92,059 + MPMX19_06826 0.46 -0.9 92,059 + MPMX19_06826 0.46 +0.0 92,059 + MPMX19_06826 0.46 -0.5 92,060 - MPMX19_06826 0.46 -1.3 92,060 - MPMX19_06826 0.46 +0.3 92,060 - MPMX19_06826 0.46 -0.5 92,218 + MPMX19_06826 0.62 -0.9 92,218 + MPMX19_06826 0.62 +0.1 92,218 + MPMX19_06826 0.62 +0.7 92,218 + MPMX19_06826 0.62 -0.9 92,218 + MPMX19_06826 0.62 -0.5 92,218 + MPMX19_06826 0.62 -0.6 92,327 - MPMX19_06826 0.72 -0.9 92,416 + MPMX19_06826 0.81 -0.2 92,416 + MPMX19_06826 0.81 -0.2 92,416 + MPMX19_06826 0.81 +1.2 92,417 - MPMX19_06826 0.81 -1.1 92,417 - MPMX19_06826 0.81 -0.6 92,417 - MPMX19_06826 0.81 -1.3 92,417 - MPMX19_06826 0.81 -0.9 92,417 - MPMX19_06826 0.81 -2.4 92,524 + -0.6 92,710 + -1.4 92,817 + MPMX19_06827 0.17 -1.4 92,817 + MPMX19_06827 0.17 -0.9 92,865 + MPMX19_06827 0.21 -1.3 93,030 + MPMX19_06827 0.34 +0.5 93,030 + MPMX19_06827 0.34 +0.3 93,030 + MPMX19_06827 0.34 -0.6 93,031 - MPMX19_06827 0.34 -0.8 93,031 - MPMX19_06827 0.34 +1.0 93,040 - MPMX19_06827 0.35 -1.8 93,040 - MPMX19_06827 0.35 -0.3 93,040 - MPMX19_06827 0.35 -0.2 93,157 - MPMX19_06827 0.45 -0.5 93,216 + MPMX19_06827 0.50 -1.5 93,217 - MPMX19_06827 0.50 -1.9 93,217 - MPMX19_06827 0.50 -0.7 93,217 - MPMX19_06827 0.50 +0.4 93,217 - MPMX19_06827 0.50 -0.5 93,217 - MPMX19_06827 0.50 -0.3 93,315 + MPMX19_06827 0.58 +0.1 93,315 + MPMX19_06827 0.58 +1.1 93,315 + MPMX19_06827 0.58 +0.4 93,315 + MPMX19_06827 0.58 +0.5 93,315 + MPMX19_06827 0.58 -0.4 93,315 + MPMX19_06827 0.58 -1.9 93,316 - MPMX19_06827 0.58 -1.2 93,316 - MPMX19_06827 0.58 -0.4 93,316 - MPMX19_06827 0.58 +0.9 93,316 - MPMX19_06827 0.58 -1.4 93,316 - MPMX19_06827 0.58 -2.8 93,414 + MPMX19_06827 0.66 +0.2 93,415 - MPMX19_06827 0.66 -1.1 93,415 - MPMX19_06827 0.66 +0.9 93,435 + MPMX19_06827 0.68 -1.6 93,435 + MPMX19_06827 0.68 -2.5 93,435 + MPMX19_06827 0.68 -1.1 93,435 + MPMX19_06827 0.68 -0.9 93,436 - MPMX19_06827 0.68 -0.9 93,436 - MPMX19_06827 0.68 -2.6 93,436 - MPMX19_06827 0.68 +0.6 93,436 - MPMX19_06827 0.68 +0.3 93,534 + MPMX19_06827 0.76 -0.3 93,534 + MPMX19_06827 0.76 +1.2 93,534 + MPMX19_06827 0.76 -0.8 93,534 + MPMX19_06827 0.76 -1.3 93,534 + MPMX19_06827 0.76 +3.1 93,535 - MPMX19_06827 0.76 +0.1 93,535 - MPMX19_06827 0.76 +0.4 93,535 - MPMX19_06827 0.76 -0.6 93,535 - MPMX19_06827 0.76 +2.1 93,535 - MPMX19_06827 0.76 -2.1 93,573 + MPMX19_06827 0.80 -0.5
Or see this region's nucleotide sequence