Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06826

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06825 and MPMX19_06826 are separated by 137 nucleotidesMPMX19_06826 and MPMX19_06827 are separated by 2 nucleotides MPMX19_06825: MPMX19_06825 - hypothetical protein, at 90,595 to 91,443 _06825 MPMX19_06826: MPMX19_06826 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 91,581 to 92,615 _06826 MPMX19_06827: MPMX19_06827 - Ectoine hydrolase, at 92,618 to 93,817 _06827 Position (kb) 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 90.770 kb on + strand, within MPMX19_06825at 90.770 kb on + strand, within MPMX19_06825at 90.771 kb on - strand, within MPMX19_06825at 90.771 kb on - strand, within MPMX19_06825at 90.771 kb on - strand, within MPMX19_06825at 90.863 kb on + strand, within MPMX19_06825at 90.863 kb on + strand, within MPMX19_06825at 90.863 kb on + strand, within MPMX19_06825at 90.864 kb on - strand, within MPMX19_06825at 90.864 kb on - strand, within MPMX19_06825at 90.864 kb on - strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.025 kb on + strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.026 kb on - strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.097 kb on + strand, within MPMX19_06825at 91.098 kb on - strand, within MPMX19_06825at 91.098 kb on - strand, within MPMX19_06825at 91.098 kb on - strand, within MPMX19_06825at 91.191 kb on - strand, within MPMX19_06825at 91.298 kb on + strand, within MPMX19_06825at 91.298 kb on + strand, within MPMX19_06825at 91.299 kb on - strand, within MPMX19_06825at 91.299 kb on - strand, within MPMX19_06825at 91.299 kb on - strand, within MPMX19_06825at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.060 kb on - strand, within MPMX19_06826at 92.060 kb on - strand, within MPMX19_06826at 92.060 kb on - strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.327 kb on - strand, within MPMX19_06826at 92.416 kb on + strand, within MPMX19_06826at 92.416 kb on + strand, within MPMX19_06826at 92.416 kb on + strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.524 kb on + strandat 92.710 kb on + strandat 92.817 kb on + strand, within MPMX19_06827at 92.817 kb on + strand, within MPMX19_06827at 92.865 kb on + strand, within MPMX19_06827at 93.030 kb on + strand, within MPMX19_06827at 93.030 kb on + strand, within MPMX19_06827at 93.030 kb on + strand, within MPMX19_06827at 93.031 kb on - strand, within MPMX19_06827at 93.031 kb on - strand, within MPMX19_06827at 93.040 kb on - strand, within MPMX19_06827at 93.040 kb on - strand, within MPMX19_06827at 93.040 kb on - strand, within MPMX19_06827at 93.157 kb on - strand, within MPMX19_06827at 93.216 kb on + strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.414 kb on + strand, within MPMX19_06827at 93.415 kb on - strand, within MPMX19_06827at 93.415 kb on - strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.573 kb on + strand, within MPMX19_06827

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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90,770 + MPMX19_06825 0.21 -2.6
90,770 + MPMX19_06825 0.21 -0.9
90,771 - MPMX19_06825 0.21 -0.8
90,771 - MPMX19_06825 0.21 -1.5
90,771 - MPMX19_06825 0.21 +0.7
90,863 + MPMX19_06825 0.32 +0.3
90,863 + MPMX19_06825 0.32 -1.9
90,863 + MPMX19_06825 0.32 +0.7
90,864 - MPMX19_06825 0.32 +0.6
90,864 - MPMX19_06825 0.32 +0.5
90,864 - MPMX19_06825 0.32 +0.7
91,025 + MPMX19_06825 0.51 -1.5
91,025 + MPMX19_06825 0.51 -1.1
91,025 + MPMX19_06825 0.51 +0.9
91,025 + MPMX19_06825 0.51 +1.9
91,025 + MPMX19_06825 0.51 +1.0
91,026 - MPMX19_06825 0.51 +0.9
91,026 - MPMX19_06825 0.51 +0.2
91,026 - MPMX19_06825 0.51 -0.7
91,026 - MPMX19_06825 0.51 -2.4
91,026 - MPMX19_06825 0.51 -0.6
91,026 - MPMX19_06825 0.51 +0.2
91,026 - MPMX19_06825 0.51 +0.5
91,097 + MPMX19_06825 0.59 +0.2
91,097 + MPMX19_06825 0.59 +1.1
91,097 + MPMX19_06825 0.59 +0.3
91,097 + MPMX19_06825 0.59 -1.9
91,097 + MPMX19_06825 0.59 -1.1
91,098 - MPMX19_06825 0.59 -0.2
91,098 - MPMX19_06825 0.59 +0.1
91,098 - MPMX19_06825 0.59 -1.3
91,191 - MPMX19_06825 0.70 -0.2
91,298 + MPMX19_06825 0.83 +0.5
91,298 + MPMX19_06825 0.83 -0.1
91,299 - MPMX19_06825 0.83 -0.4
91,299 - MPMX19_06825 0.83 -1.0
91,299 - MPMX19_06825 0.83 -0.2
92,020 + MPMX19_06826 0.42 -3.1
92,020 + MPMX19_06826 0.42 -0.5
92,020 + MPMX19_06826 0.42 -1.0
92,020 + MPMX19_06826 0.42 -0.1
92,020 + MPMX19_06826 0.42 +0.1
92,020 + MPMX19_06826 0.42 -2.3
92,020 + MPMX19_06826 0.42 -0.9
92,021 - MPMX19_06826 0.43 -2.1
92,021 - MPMX19_06826 0.43 -0.5
92,021 - MPMX19_06826 0.43 -0.2
92,021 - MPMX19_06826 0.43 -0.5
92,059 + MPMX19_06826 0.46 -0.1
92,059 + MPMX19_06826 0.46 -0.9
92,059 + MPMX19_06826 0.46 -0.9
92,059 + MPMX19_06826 0.46 +0.0
92,059 + MPMX19_06826 0.46 -0.5
92,060 - MPMX19_06826 0.46 -1.3
92,060 - MPMX19_06826 0.46 +0.3
92,060 - MPMX19_06826 0.46 -0.5
92,218 + MPMX19_06826 0.62 -0.9
92,218 + MPMX19_06826 0.62 +0.1
92,218 + MPMX19_06826 0.62 +0.7
92,218 + MPMX19_06826 0.62 -0.9
92,218 + MPMX19_06826 0.62 -0.5
92,218 + MPMX19_06826 0.62 -0.6
92,327 - MPMX19_06826 0.72 -0.9
92,416 + MPMX19_06826 0.81 -0.2
92,416 + MPMX19_06826 0.81 -0.2
92,416 + MPMX19_06826 0.81 +1.2
92,417 - MPMX19_06826 0.81 -1.1
92,417 - MPMX19_06826 0.81 -0.6
92,417 - MPMX19_06826 0.81 -1.3
92,417 - MPMX19_06826 0.81 -0.9
92,417 - MPMX19_06826 0.81 -2.4
92,524 + -0.6
92,710 + -1.4
92,817 + MPMX19_06827 0.17 -1.4
92,817 + MPMX19_06827 0.17 -0.9
92,865 + MPMX19_06827 0.21 -1.3
93,030 + MPMX19_06827 0.34 +0.5
93,030 + MPMX19_06827 0.34 +0.3
93,030 + MPMX19_06827 0.34 -0.6
93,031 - MPMX19_06827 0.34 -0.8
93,031 - MPMX19_06827 0.34 +1.0
93,040 - MPMX19_06827 0.35 -1.8
93,040 - MPMX19_06827 0.35 -0.3
93,040 - MPMX19_06827 0.35 -0.2
93,157 - MPMX19_06827 0.45 -0.5
93,216 + MPMX19_06827 0.50 -1.5
93,217 - MPMX19_06827 0.50 -1.9
93,217 - MPMX19_06827 0.50 -0.7
93,217 - MPMX19_06827 0.50 +0.4
93,217 - MPMX19_06827 0.50 -0.5
93,217 - MPMX19_06827 0.50 -0.3
93,315 + MPMX19_06827 0.58 +0.1
93,315 + MPMX19_06827 0.58 +1.1
93,315 + MPMX19_06827 0.58 +0.4
93,315 + MPMX19_06827 0.58 +0.5
93,315 + MPMX19_06827 0.58 -0.4
93,315 + MPMX19_06827 0.58 -1.9
93,316 - MPMX19_06827 0.58 -1.2
93,316 - MPMX19_06827 0.58 -0.4
93,316 - MPMX19_06827 0.58 +0.9
93,316 - MPMX19_06827 0.58 -1.4
93,316 - MPMX19_06827 0.58 -2.8
93,414 + MPMX19_06827 0.66 +0.2
93,415 - MPMX19_06827 0.66 -1.1
93,415 - MPMX19_06827 0.66 +0.9
93,435 + MPMX19_06827 0.68 -1.6
93,435 + MPMX19_06827 0.68 -2.5
93,435 + MPMX19_06827 0.68 -1.1
93,435 + MPMX19_06827 0.68 -0.9
93,436 - MPMX19_06827 0.68 -0.9
93,436 - MPMX19_06827 0.68 -2.6
93,436 - MPMX19_06827 0.68 +0.6
93,436 - MPMX19_06827 0.68 +0.3
93,534 + MPMX19_06827 0.76 -0.3
93,534 + MPMX19_06827 0.76 +1.2
93,534 + MPMX19_06827 0.76 -0.8
93,534 + MPMX19_06827 0.76 -1.3
93,534 + MPMX19_06827 0.76 +3.1
93,535 - MPMX19_06827 0.76 +0.1
93,535 - MPMX19_06827 0.76 +0.4
93,535 - MPMX19_06827 0.76 -0.6
93,535 - MPMX19_06827 0.76 +2.1
93,535 - MPMX19_06827 0.76 -2.1
93,573 + MPMX19_06827 0.80 -0.5

Or see this region's nucleotide sequence