Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06463 and MPMX19_06464 overlap by 4 nucleotides MPMX19_06464 and MPMX19_06465 are separated by 0 nucleotides MPMX19_06465 and MPMX19_06466 overlap by 4 nucleotides
MPMX19_06463: MPMX19_06463 - Hydroxycarboxylate dehydrogenase B, at 246,515 to 247,579
_06463
MPMX19_06464: MPMX19_06464 - Tryptophan synthase beta chain, at 247,576 to 248,856
_06464
MPMX19_06465: MPMX19_06465 - hypothetical protein, at 248,857 to 249,768
_06465
MPMX19_06466: MPMX19_06466 - Vitamin B12 import ATP-binding protein BtuD, at 249,765 to 250,601
_06466
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1
2 at 246.611 kb on + strand at 246.611 kb on + strand at 246.611 kb on + strand at 246.611 kb on + strand at 246.611 kb on + strand at 246.611 kb on + strand at 246.612 kb on - strand at 246.612 kb on - strand at 246.612 kb on - strand at 246.612 kb on - strand at 246.612 kb on - strand at 246.612 kb on - strand at 246.612 kb on - strand at 246.612 kb on - strand at 246.871 kb on - strand, within MPMX19_06463 at 246.877 kb on + strand, within MPMX19_06463 at 246.877 kb on + strand, within MPMX19_06463 at 246.877 kb on + strand, within MPMX19_06463 at 246.878 kb on - strand, within MPMX19_06463 at 246.878 kb on - strand, within MPMX19_06463 at 246.923 kb on + strand, within MPMX19_06463 at 246.923 kb on + strand, within MPMX19_06463 at 246.923 kb on + strand, within MPMX19_06463 at 246.923 kb on + strand, within MPMX19_06463 at 247.059 kb on + strand, within MPMX19_06463 at 247.059 kb on + strand, within MPMX19_06463 at 247.059 kb on + strand, within MPMX19_06463 at 247.060 kb on - strand, within MPMX19_06463 at 247.060 kb on - strand, within MPMX19_06463 at 247.204 kb on - strand, within MPMX19_06463 at 247.204 kb on - strand, within MPMX19_06463 at 247.204 kb on - strand, within MPMX19_06463 at 247.204 kb on - strand, within MPMX19_06463 at 247.222 kb on + strand, within MPMX19_06463 at 247.435 kb on + strand, within MPMX19_06463 at 247.435 kb on + strand, within MPMX19_06463 at 247.435 kb on + strand, within MPMX19_06463 at 247.435 kb on + strand, within MPMX19_06463 at 247.435 kb on + strand, within MPMX19_06463 at 247.436 kb on - strand, within MPMX19_06463 at 247.436 kb on - strand, within MPMX19_06463 at 247.436 kb on - strand, within MPMX19_06463 at 247.436 kb on - strand, within MPMX19_06463 at 247.436 kb on - strand, within MPMX19_06463 at 247.604 kb on + strand at 247.604 kb on + strand at 247.605 kb on - strand at 247.605 kb on - strand at 247.640 kb on - strand at 247.640 kb on - strand at 247.640 kb on - strand at 247.655 kb on + strand at 247.733 kb on + strand, within MPMX19_06464 at 247.733 kb on + strand, within MPMX19_06464 at 247.734 kb on - strand, within MPMX19_06464 at 247.742 kb on + strand, within MPMX19_06464 at 247.742 kb on + strand, within MPMX19_06464 at 247.742 kb on + strand, within MPMX19_06464 at 248.753 kb on + strand at 248.753 kb on + strand at 248.859 kb on - strand at 248.859 kb on - strand at 248.886 kb on + strand at 248.975 kb on + strand, within MPMX19_06465 at 248.975 kb on + strand, within MPMX19_06465 at 248.975 kb on + strand, within MPMX19_06465 at 249.143 kb on + strand, within MPMX19_06465 at 249.144 kb on - strand, within MPMX19_06465 at 249.144 kb on - strand, within MPMX19_06465 at 249.144 kb on - strand, within MPMX19_06465 at 249.144 kb on - strand, within MPMX19_06465 at 249.144 kb on - strand, within MPMX19_06465 at 249.164 kb on + strand, within MPMX19_06465 at 249.165 kb on - strand, within MPMX19_06465 at 249.165 kb on - strand, within MPMX19_06465 at 249.165 kb on - strand, within MPMX19_06465 at 249.428 kb on + strand, within MPMX19_06465 at 249.429 kb on - strand, within MPMX19_06465 at 249.429 kb on - strand, within MPMX19_06465 at 249.477 kb on + strand, within MPMX19_06465 at 249.695 kb on + strand at 249.696 kb on - strand at 249.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 246,611 + -0.4 246,611 + -1.2 246,611 + +1.3 246,611 + +0.1 246,611 + -2.0 246,611 + -2.3 246,612 - -1.5 246,612 - +0.9 246,612 - +0.2 246,612 - +0.1 246,612 - +1.1 246,612 - -1.8 246,612 - -1.7 246,612 - -1.6 246,871 - MPMX19_06463 0.33 -0.3 246,877 + MPMX19_06463 0.34 +0.5 246,877 + MPMX19_06463 0.34 -0.9 246,877 + MPMX19_06463 0.34 +0.4 246,878 - MPMX19_06463 0.34 -1.0 246,878 - MPMX19_06463 0.34 -0.4 246,923 + MPMX19_06463 0.38 -0.4 246,923 + MPMX19_06463 0.38 +0.1 246,923 + MPMX19_06463 0.38 -0.1 246,923 + MPMX19_06463 0.38 -0.3 247,059 + MPMX19_06463 0.51 +0.3 247,059 + MPMX19_06463 0.51 +0.1 247,059 + MPMX19_06463 0.51 +0.8 247,060 - MPMX19_06463 0.51 -1.7 247,060 - MPMX19_06463 0.51 -1.6 247,204 - MPMX19_06463 0.65 -1.6 247,204 - MPMX19_06463 0.65 -0.6 247,204 - MPMX19_06463 0.65 -0.5 247,204 - MPMX19_06463 0.65 -1.3 247,222 + MPMX19_06463 0.66 -0.8 247,435 + MPMX19_06463 0.86 -0.5 247,435 + MPMX19_06463 0.86 -1.2 247,435 + MPMX19_06463 0.86 -0.1 247,435 + MPMX19_06463 0.86 +0.4 247,435 + MPMX19_06463 0.86 -0.2 247,436 - MPMX19_06463 0.86 -0.1 247,436 - MPMX19_06463 0.86 -1.8 247,436 - MPMX19_06463 0.86 -0.9 247,436 - MPMX19_06463 0.86 -1.3 247,436 - MPMX19_06463 0.86 +0.6 247,604 + -2.1 247,604 + +0.3 247,605 - -1.6 247,605 - +0.2 247,640 - -0.7 247,640 - -1.2 247,640 - -0.4 247,655 + +0.4 247,733 + MPMX19_06464 0.12 +0.2 247,733 + MPMX19_06464 0.12 -0.5 247,734 - MPMX19_06464 0.12 +0.0 247,742 + MPMX19_06464 0.13 +0.2 247,742 + MPMX19_06464 0.13 +0.2 247,742 + MPMX19_06464 0.13 +0.6 248,753 + +0.7 248,753 + -0.0 248,859 - -0.5 248,859 - +1.5 248,886 + -1.3 248,975 + MPMX19_06465 0.13 -1.6 248,975 + MPMX19_06465 0.13 -0.4 248,975 + MPMX19_06465 0.13 -0.3 249,143 + MPMX19_06465 0.31 +1.9 249,144 - MPMX19_06465 0.31 -1.6 249,144 - MPMX19_06465 0.31 -0.1 249,144 - MPMX19_06465 0.31 -0.6 249,144 - MPMX19_06465 0.31 -1.6 249,144 - MPMX19_06465 0.31 -0.5 249,164 + MPMX19_06465 0.34 +0.1 249,165 - MPMX19_06465 0.34 -1.5 249,165 - MPMX19_06465 0.34 -1.0 249,165 - MPMX19_06465 0.34 -1.1 249,428 + MPMX19_06465 0.63 -0.8 249,429 - MPMX19_06465 0.63 +0.1 249,429 - MPMX19_06465 0.63 -0.4 249,477 + MPMX19_06465 0.68 -1.6 249,695 + +0.5 249,696 - -0.5 249,696 - +0.5
Or see this region's nucleotide sequence