Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06383 and MPMX19_06384 are separated by 172 nucleotides MPMX19_06384 and MPMX19_06385 are separated by 313 nucleotides MPMX19_06385 and MPMX19_06386 are separated by 10 nucleotides MPMX19_06386 and MPMX19_06387 are separated by 111 nucleotides
MPMX19_06383: MPMX19_06383 - hypothetical protein, at 151,808 to 152,494
_06383
MPMX19_06384: MPMX19_06384 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 152,667 to 153,656
_06384
MPMX19_06385: MPMX19_06385 - hypothetical protein, at 153,970 to 154,146
_06385
MPMX19_06386: MPMX19_06386 - hypothetical protein, at 154,157 to 154,423
_06386
MPMX19_06387: MPMX19_06387 - hypothetical protein, at 154,535 to 155,488
_06387
Position (kb) 152
153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 151.798 kb on + strand at 151.798 kb on + strand at 151.798 kb on + strand at 151.810 kb on - strand at 151.827 kb on + strand at 151.838 kb on + strand at 151.838 kb on + strand at 151.838 kb on + strand at 151.839 kb on - strand at 151.883 kb on + strand, within MPMX19_06383 at 151.923 kb on + strand, within MPMX19_06383 at 151.923 kb on + strand, within MPMX19_06383 at 151.923 kb on + strand, within MPMX19_06383 at 151.924 kb on - strand, within MPMX19_06383 at 152.028 kb on - strand, within MPMX19_06383 at 152.028 kb on - strand, within MPMX19_06383 at 152.287 kb on + strand, within MPMX19_06383 at 152.288 kb on - strand, within MPMX19_06383 at 152.421 kb on + strand, within MPMX19_06383 at 152.422 kb on - strand, within MPMX19_06383 at 152.422 kb on - strand, within MPMX19_06383 at 152.422 kb on - strand, within MPMX19_06383 at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.496 kb on - strand at 152.669 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.894 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 153.112 kb on + strand, within MPMX19_06384 at 153.112 kb on + strand, within MPMX19_06384 at 153.113 kb on - strand, within MPMX19_06384 at 153.113 kb on - strand, within MPMX19_06384 at 153.153 kb on - strand, within MPMX19_06384 at 153.153 kb on - strand, within MPMX19_06384 at 153.213 kb on - strand, within MPMX19_06384 at 153.303 kb on + strand, within MPMX19_06384 at 153.303 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.529 kb on + strand, within MPMX19_06384 at 153.529 kb on + strand, within MPMX19_06384 at 153.529 kb on + strand, within MPMX19_06384 at 153.530 kb on - strand, within MPMX19_06384 at 153.530 kb on - strand, within MPMX19_06384 at 153.530 kb on - strand, within MPMX19_06384 at 153.599 kb on + strand at 153.599 kb on + strand at 153.605 kb on + strand at 153.606 kb on - strand at 153.679 kb on + strand at 153.679 kb on + strand at 153.680 kb on - strand at 153.680 kb on - strand at 153.733 kb on + strand at 153.733 kb on + strand at 153.733 kb on + strand at 153.734 kb on - strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.971 kb on + strand at 153.972 kb on - strand at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.159 kb on - strand at 154.159 kb on - strand at 154.159 kb on - strand at 154.164 kb on + strand at 154.165 kb on - strand at 154.165 kb on - strand at 154.165 kb on - strand at 154.249 kb on + strand, within MPMX19_06386 at 154.250 kb on - strand, within MPMX19_06386 at 154.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 151,798 + -1.3 151,798 + -1.8 151,798 + -0.2 151,810 - -0.9 151,827 + +0.4 151,838 + -1.0 151,838 + -0.4 151,838 + -0.6 151,839 - +0.6 151,883 + MPMX19_06383 0.11 -0.3 151,923 + MPMX19_06383 0.17 -0.2 151,923 + MPMX19_06383 0.17 -0.4 151,923 + MPMX19_06383 0.17 +0.7 151,924 - MPMX19_06383 0.17 +0.1 152,028 - MPMX19_06383 0.32 +0.1 152,028 - MPMX19_06383 0.32 -1.6 152,287 + MPMX19_06383 0.70 -0.6 152,288 - MPMX19_06383 0.70 +0.7 152,421 + MPMX19_06383 0.89 -1.1 152,422 - MPMX19_06383 0.89 +0.2 152,422 - MPMX19_06383 0.89 +0.1 152,422 - MPMX19_06383 0.89 -0.5 152,490 + +0.5 152,490 + -0.9 152,490 + -0.4 152,490 + -1.8 152,490 + -1.5 152,490 + +2.0 152,490 + -0.6 152,490 + -1.1 152,491 - +0.7 152,491 - -0.5 152,491 - -0.9 152,491 - +0.5 152,491 - -1.5 152,491 - -0.4 152,491 - -0.7 152,494 + +0.1 152,494 + -0.5 152,494 + -1.8 152,494 + -0.5 152,494 + -2.2 152,494 + +0.4 152,496 - -1.9 152,669 - -0.3 152,700 - -0.5 152,700 - -0.2 152,700 - +0.3 152,700 - -1.6 152,700 - +1.2 152,721 + -0.3 152,721 + -0.4 152,721 + -0.2 152,721 + +0.6 152,721 + -1.8 152,721 + -0.1 152,721 + -0.5 152,721 + -0.1 152,721 + -1.0 152,721 + +1.7 152,721 + -0.5 152,722 - -0.6 152,722 - +0.5 152,722 - +0.1 152,722 - +0.9 152,722 - -0.7 152,722 - +0.0 152,722 - +0.2 152,722 - +0.7 152,722 - +0.1 152,722 - +0.6 152,722 - +0.2 152,855 + MPMX19_06384 0.19 -0.6 152,855 + MPMX19_06384 0.19 +0.9 152,855 + MPMX19_06384 0.19 -0.5 152,855 + MPMX19_06384 0.19 +0.3 152,855 + MPMX19_06384 0.19 +0.2 152,855 + MPMX19_06384 0.19 -0.0 152,855 + MPMX19_06384 0.19 -0.8 152,855 + MPMX19_06384 0.19 +1.3 152,856 - MPMX19_06384 0.19 -1.1 152,856 - MPMX19_06384 0.19 -0.6 152,856 - MPMX19_06384 0.19 +0.4 152,856 - MPMX19_06384 0.19 +1.4 152,856 - MPMX19_06384 0.19 +0.1 152,856 - MPMX19_06384 0.19 +0.6 152,856 - MPMX19_06384 0.19 +0.4 152,856 - MPMX19_06384 0.19 -1.2 152,856 - MPMX19_06384 0.19 -1.5 152,856 - MPMX19_06384 0.19 -0.9 152,856 - MPMX19_06384 0.19 -0.8 152,856 - MPMX19_06384 0.19 +0.7 152,856 - MPMX19_06384 0.19 -0.3 152,856 - MPMX19_06384 0.19 -1.4 152,856 - MPMX19_06384 0.19 -1.4 152,856 - MPMX19_06384 0.19 -1.9 152,894 + MPMX19_06384 0.23 +0.2 152,899 + MPMX19_06384 0.23 -1.5 152,899 + MPMX19_06384 0.23 +0.4 152,899 + MPMX19_06384 0.23 -0.7 152,899 + MPMX19_06384 0.23 +1.7 152,899 + MPMX19_06384 0.23 +0.7 152,899 + MPMX19_06384 0.23 +1.2 152,899 + MPMX19_06384 0.23 -0.9 152,899 + MPMX19_06384 0.23 +0.7 152,899 + MPMX19_06384 0.23 -0.6 152,899 + MPMX19_06384 0.23 -0.3 152,900 - MPMX19_06384 0.24 -0.1 152,900 - MPMX19_06384 0.24 +0.1 152,900 - MPMX19_06384 0.24 +0.3 152,900 - MPMX19_06384 0.24 -0.9 152,900 - MPMX19_06384 0.24 +0.2 152,900 - MPMX19_06384 0.24 -1.0 152,900 - MPMX19_06384 0.24 -0.2 152,900 - MPMX19_06384 0.24 -0.7 152,900 - MPMX19_06384 0.24 -1.0 152,900 - MPMX19_06384 0.24 -1.1 153,112 + MPMX19_06384 0.45 -1.5 153,112 + MPMX19_06384 0.45 -1.2 153,113 - MPMX19_06384 0.45 -0.6 153,113 - MPMX19_06384 0.45 +1.7 153,153 - MPMX19_06384 0.49 +0.0 153,153 - MPMX19_06384 0.49 +0.6 153,213 - MPMX19_06384 0.55 -0.2 153,303 + MPMX19_06384 0.64 -0.7 153,303 + MPMX19_06384 0.64 +0.1 153,337 + MPMX19_06384 0.68 +0.7 153,337 + MPMX19_06384 0.68 -1.1 153,337 + MPMX19_06384 0.68 -0.3 153,337 + MPMX19_06384 0.68 +1.4 153,337 + MPMX19_06384 0.68 -1.0 153,337 + MPMX19_06384 0.68 -0.4 153,337 + MPMX19_06384 0.68 -1.2 153,338 - MPMX19_06384 0.68 -0.1 153,338 - MPMX19_06384 0.68 -0.6 153,338 - MPMX19_06384 0.68 -1.2 153,338 - MPMX19_06384 0.68 -1.1 153,338 - MPMX19_06384 0.68 +0.8 153,338 - MPMX19_06384 0.68 -0.8 153,338 - MPMX19_06384 0.68 -0.5 153,338 - MPMX19_06384 0.68 -2.5 153,338 - MPMX19_06384 0.68 -0.5 153,338 - MPMX19_06384 0.68 -0.7 153,338 - MPMX19_06384 0.68 -0.6 153,338 - MPMX19_06384 0.68 +0.2 153,419 + MPMX19_06384 0.76 -1.0 153,419 + MPMX19_06384 0.76 +0.3 153,419 + MPMX19_06384 0.76 -0.5 153,419 + MPMX19_06384 0.76 +1.7 153,419 + MPMX19_06384 0.76 +0.0 153,419 + MPMX19_06384 0.76 -1.3 153,420 - MPMX19_06384 0.76 -0.4 153,420 - MPMX19_06384 0.76 +1.0 153,420 - MPMX19_06384 0.76 -0.1 153,420 - MPMX19_06384 0.76 +1.5 153,420 - MPMX19_06384 0.76 -0.6 153,420 - MPMX19_06384 0.76 +0.7 153,420 - MPMX19_06384 0.76 +1.9 153,420 - MPMX19_06384 0.76 +0.1 153,420 - MPMX19_06384 0.76 +1.1 153,466 + MPMX19_06384 0.81 +1.0 153,466 + MPMX19_06384 0.81 -0.3 153,466 + MPMX19_06384 0.81 +0.5 153,466 + MPMX19_06384 0.81 -0.8 153,467 - MPMX19_06384 0.81 -1.0 153,467 - MPMX19_06384 0.81 +0.5 153,467 - MPMX19_06384 0.81 +0.8 153,467 - MPMX19_06384 0.81 +1.5 153,467 - MPMX19_06384 0.81 -0.8 153,467 - MPMX19_06384 0.81 -0.6 153,467 - MPMX19_06384 0.81 -0.7 153,529 + MPMX19_06384 0.87 -1.3 153,529 + MPMX19_06384 0.87 -1.4 153,529 + MPMX19_06384 0.87 +0.4 153,530 - MPMX19_06384 0.87 +1.4 153,530 - MPMX19_06384 0.87 +0.6 153,530 - MPMX19_06384 0.87 -0.6 153,599 + -0.0 153,599 + -0.2 153,605 + -0.4 153,606 - -0.2 153,679 + -0.3 153,679 + -0.6 153,680 - +0.9 153,680 - +1.0 153,733 + +0.5 153,733 + +0.4 153,733 + -0.1 153,734 - -0.4 153,856 + +0.5 153,856 + +0.4 153,856 + +0.7 153,856 + +0.7 153,856 + +1.0 153,856 + +1.3 153,856 + +1.1 153,856 + -0.5 153,856 + -0.3 153,856 + -0.5 153,856 + +0.4 153,856 + -0.2 153,857 - -0.8 153,857 - +0.0 153,857 - -0.5 153,857 - +0.4 153,857 - -1.5 153,857 - -1.6 153,857 - -0.9 153,971 + +0.6 153,972 - -0.1 154,085 + MPMX19_06385 0.65 -0.9 154,085 + MPMX19_06385 0.65 +0.3 154,085 + MPMX19_06385 0.65 +0.5 154,085 + MPMX19_06385 0.65 +0.1 154,085 + MPMX19_06385 0.65 -0.8 154,086 - MPMX19_06385 0.66 +0.4 154,086 - MPMX19_06385 0.66 -0.3 154,086 - MPMX19_06385 0.66 -1.1 154,086 - MPMX19_06385 0.66 -0.1 154,158 + +0.0 154,158 + -1.1 154,158 + +1.1 154,158 + +0.5 154,158 + -1.9 154,158 + -0.4 154,159 - -0.0 154,159 - +1.1 154,159 - +1.2 154,164 + -0.1 154,165 - -1.5 154,165 - -1.0 154,165 - +1.6 154,249 + MPMX19_06386 0.34 -0.0 154,250 - MPMX19_06386 0.35 +1.4 154,436 - -1.3
Or see this region's nucleotide sequence