Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06317

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06316 and MPMX19_06317 are separated by 64 nucleotidesMPMX19_06317 and MPMX19_06318 are separated by 219 nucleotides MPMX19_06316: MPMX19_06316 - hypothetical protein, at 77,532 to 78,440 _06316 MPMX19_06317: MPMX19_06317 - hypothetical protein, at 78,505 to 78,777 _06317 MPMX19_06318: MPMX19_06318 - hypothetical protein, at 78,997 to 79,698 _06318 Position (kb) 78 79Strain fitness (log2 ratio) -3 -2 -1 0 1at 77.661 kb on + strand, within MPMX19_06316at 77.661 kb on + strand, within MPMX19_06316at 77.745 kb on + strand, within MPMX19_06316at 77.745 kb on + strand, within MPMX19_06316at 77.745 kb on + strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.994 kb on + strand, within MPMX19_06316at 77.994 kb on + strand, within MPMX19_06316at 77.994 kb on + strand, within MPMX19_06316at 77.995 kb on - strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.206 kb on + strand, within MPMX19_06316at 78.206 kb on + strand, within MPMX19_06316at 78.206 kb on + strand, within MPMX19_06316at 78.683 kb on + strand, within MPMX19_06317at 78.777 kb on + strandat 78.778 kb on - strandat 78.778 kb on - strandat 78.828 kb on + strandat 78.828 kb on + strandat 78.828 kb on + strandat 78.828 kb on + strandat 78.829 kb on - strandat 78.829 kb on - strandat 78.829 kb on - strandat 78.829 kb on - strandat 78.833 kb on + strandat 78.833 kb on + strandat 78.833 kb on + strandat 78.834 kb on - strandat 78.834 kb on - strandat 78.834 kb on - strandat 78.834 kb on - strandat 78.834 kb on - strandat 78.834 kb on - strandat 78.854 kb on + strandat 78.854 kb on + strandat 78.855 kb on - strandat 78.902 kb on + strandat 78.902 kb on + strandat 78.902 kb on + strandat 78.902 kb on + strandat 78.902 kb on + strandat 78.903 kb on - strandat 78.903 kb on - strandat 78.906 kb on - strandat 78.906 kb on - strandat 79.049 kb on + strandat 79.050 kb on - strandat 79.111 kb on + strand, within MPMX19_06318at 79.111 kb on + strand, within MPMX19_06318at 79.112 kb on - strand, within MPMX19_06318at 79.112 kb on - strand, within MPMX19_06318at 79.146 kb on + strand, within MPMX19_06318at 79.146 kb on + strand, within MPMX19_06318at 79.146 kb on + strand, within MPMX19_06318at 79.147 kb on - strand, within MPMX19_06318at 79.147 kb on - strand, within MPMX19_06318at 79.375 kb on + strand, within MPMX19_06318at 79.375 kb on + strand, within MPMX19_06318at 79.375 kb on + strand, within MPMX19_06318at 79.376 kb on - strand, within MPMX19_06318at 79.376 kb on - strand, within MPMX19_06318at 79.376 kb on - strand, within MPMX19_06318at 79.376 kb on - strand, within MPMX19_06318at 79.540 kb on + strand, within MPMX19_06318at 79.540 kb on + strand, within MPMX19_06318at 79.541 kb on - strand, within MPMX19_06318at 79.552 kb on + strand, within MPMX19_06318at 79.552 kb on + strand, within MPMX19_06318at 79.552 kb on + strand, within MPMX19_06318at 79.552 kb on + strand, within MPMX19_06318at 79.552 kb on + strand, within MPMX19_06318at 79.552 kb on + strand, within MPMX19_06318at 79.553 kb on - strand, within MPMX19_06318at 79.553 kb on - strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.600 kb on + strand, within MPMX19_06318at 79.601 kb on - strand, within MPMX19_06318at 79.601 kb on - strand, within MPMX19_06318at 79.601 kb on - strand, within MPMX19_06318at 79.686 kb on + strandat 79.687 kb on - strandat 79.774 kb on + strandat 79.774 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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77,661 + MPMX19_06316 0.14 -1.0
77,661 + MPMX19_06316 0.14 -0.8
77,745 + MPMX19_06316 0.23 -0.9
77,745 + MPMX19_06316 0.23 +0.2
77,745 + MPMX19_06316 0.23 +0.7
77,746 - MPMX19_06316 0.24 -0.5
77,746 - MPMX19_06316 0.24 -1.5
77,746 - MPMX19_06316 0.24 -0.3
77,746 - MPMX19_06316 0.24 +0.0
77,746 - MPMX19_06316 0.24 -0.9
77,994 + MPMX19_06316 0.51 -2.1
77,994 + MPMX19_06316 0.51 +0.3
77,994 + MPMX19_06316 0.51 -0.6
77,995 - MPMX19_06316 0.51 -1.1
78,027 + MPMX19_06316 0.54 -1.2
78,027 + MPMX19_06316 0.54 -1.3
78,027 + MPMX19_06316 0.54 -0.1
78,027 + MPMX19_06316 0.54 +0.1
78,027 + MPMX19_06316 0.54 +0.3
78,027 + MPMX19_06316 0.54 +1.0
78,027 + MPMX19_06316 0.54 -0.8
78,027 + MPMX19_06316 0.54 -1.2
78,027 + MPMX19_06316 0.54 -0.6
78,027 + MPMX19_06316 0.54 -1.1
78,027 + MPMX19_06316 0.54 -0.6
78,027 + MPMX19_06316 0.54 -1.2
78,027 + MPMX19_06316 0.54 -0.1
78,027 + MPMX19_06316 0.54 -0.8
78,027 + MPMX19_06316 0.54 +1.5
78,027 + MPMX19_06316 0.54 -0.8
78,027 + MPMX19_06316 0.54 +0.9
78,027 + MPMX19_06316 0.54 +1.1
78,027 + MPMX19_06316 0.54 -0.0
78,027 + MPMX19_06316 0.54 -2.2
78,027 + MPMX19_06316 0.54 -3.5
78,027 + MPMX19_06316 0.54 +1.1
78,027 + MPMX19_06316 0.54 -1.1
78,027 + MPMX19_06316 0.54 -2.1
78,027 + MPMX19_06316 0.54 -1.3
78,027 + MPMX19_06316 0.54 -0.1
78,027 + MPMX19_06316 0.54 -0.1
78,027 + MPMX19_06316 0.54 -0.7
78,027 + MPMX19_06316 0.54 +0.2
78,027 + MPMX19_06316 0.54 -0.4
78,027 + MPMX19_06316 0.54 +0.7
78,027 + MPMX19_06316 0.54 -0.9
78,027 + MPMX19_06316 0.54 -2.5
78,028 - MPMX19_06316 0.55 -1.1
78,028 - MPMX19_06316 0.55 -1.5
78,028 - MPMX19_06316 0.55 -0.9
78,028 - MPMX19_06316 0.55 -2.1
78,028 - MPMX19_06316 0.55 -1.8
78,028 - MPMX19_06316 0.55 -0.2
78,028 - MPMX19_06316 0.55 -0.9
78,028 - MPMX19_06316 0.55 -1.8
78,028 - MPMX19_06316 0.55 -1.6
78,028 - MPMX19_06316 0.55 -0.6
78,028 - MPMX19_06316 0.55 -0.2
78,028 - MPMX19_06316 0.55 -1.3
78,206 + MPMX19_06316 0.74 -0.9
78,206 + MPMX19_06316 0.74 +0.4
78,206 + MPMX19_06316 0.74 +0.2
78,683 + MPMX19_06317 0.65 -0.3
78,777 + -1.3
78,778 - -1.1
78,778 - +0.4
78,828 + -0.9
78,828 + +1.0
78,828 + -2.2
78,828 + -0.3
78,829 - +0.5
78,829 - +1.0
78,829 - +0.8
78,829 - +0.4
78,833 + -0.1
78,833 + -1.0
78,833 + -1.4
78,834 - +1.0
78,834 - -0.6
78,834 - -1.3
78,834 - -0.1
78,834 - -0.7
78,834 - -0.3
78,854 + +1.5
78,854 + +0.0
78,855 - -0.7
78,902 + -2.0
78,902 + -0.3
78,902 + -1.1
78,902 + -1.9
78,902 + +0.4
78,903 - -1.3
78,903 - -1.4
78,906 - +0.1
78,906 - -1.1
79,049 + -1.3
79,050 - -0.5
79,111 + MPMX19_06318 0.16 -0.8
79,111 + MPMX19_06318 0.16 -2.9
79,112 - MPMX19_06318 0.16 -0.6
79,112 - MPMX19_06318 0.16 -0.1
79,146 + MPMX19_06318 0.21 -0.3
79,146 + MPMX19_06318 0.21 -1.2
79,146 + MPMX19_06318 0.21 +0.4
79,147 - MPMX19_06318 0.21 +0.4
79,147 - MPMX19_06318 0.21 -1.6
79,375 + MPMX19_06318 0.54 +1.2
79,375 + MPMX19_06318 0.54 -0.5
79,375 + MPMX19_06318 0.54 +0.3
79,376 - MPMX19_06318 0.54 -1.6
79,376 - MPMX19_06318 0.54 -1.0
79,376 - MPMX19_06318 0.54 -0.4
79,376 - MPMX19_06318 0.54 +0.3
79,540 + MPMX19_06318 0.77 -0.5
79,540 + MPMX19_06318 0.77 +0.9
79,541 - MPMX19_06318 0.77 -1.1
79,552 + MPMX19_06318 0.79 +0.3
79,552 + MPMX19_06318 0.79 -0.3
79,552 + MPMX19_06318 0.79 -1.2
79,552 + MPMX19_06318 0.79 -1.1
79,552 + MPMX19_06318 0.79 -0.2
79,552 + MPMX19_06318 0.79 -1.1
79,553 - MPMX19_06318 0.79 -1.4
79,553 - MPMX19_06318 0.79 -1.6
79,600 + MPMX19_06318 0.86 -0.8
79,600 + MPMX19_06318 0.86 -1.1
79,600 + MPMX19_06318 0.86 +0.2
79,600 + MPMX19_06318 0.86 -1.2
79,600 + MPMX19_06318 0.86 +0.5
79,600 + MPMX19_06318 0.86 -0.2
79,600 + MPMX19_06318 0.86 -1.5
79,600 + MPMX19_06318 0.86 -1.1
79,600 + MPMX19_06318 0.86 +0.3
79,600 + MPMX19_06318 0.86 +1.4
79,601 - MPMX19_06318 0.86 -0.6
79,601 - MPMX19_06318 0.86 -1.3
79,601 - MPMX19_06318 0.86 -2.1
79,686 + +0.7
79,687 - -1.2
79,774 + -0.1
79,774 + +0.3

Or see this region's nucleotide sequence