Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05994 and MPMX19_05995 are separated by 487 nucleotides MPMX19_05995 and MPMX19_05996 are separated by 114 nucleotides MPMX19_05996 and MPMX19_05997 are separated by 55 nucleotides
MPMX19_05994: MPMX19_05994 - hypothetical protein, at 147,637 to 148,494
_05994
MPMX19_05995: MPMX19_05995 - hypothetical protein, at 148,982 to 150,598
_05995
MPMX19_05996: MPMX19_05996 - Dodecaprenyl-phosphate galacturonate synthase, at 150,713 to 151,474
_05996
MPMX19_05997: MPMX19_05997 - hypothetical protein, at 151,530 to 151,865
_05997
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.643 kb on - strand at 148.643 kb on - strand at 148.673 kb on - strand at 148.673 kb on - strand at 148.673 kb on - strand at 149.009 kb on + strand at 149.009 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.141 kb on + strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.142 kb on - strand at 149.720 kb on + strand, within MPMX19_05995 at 149.720 kb on + strand, within MPMX19_05995 at 149.720 kb on + strand, within MPMX19_05995 at 149.720 kb on + strand, within MPMX19_05995 at 149.720 kb on + strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.721 kb on - strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.729 kb on + strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.730 kb on - strand, within MPMX19_05995 at 149.780 kb on + strand, within MPMX19_05995 at 149.780 kb on + strand, within MPMX19_05995 at 149.780 kb on + strand, within MPMX19_05995 at 149.780 kb on + strand, within MPMX19_05995 at 149.781 kb on - strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.822 kb on + strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 149.823 kb on - strand, within MPMX19_05995 at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.551 kb on + strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.552 kb on - strand at 150.586 kb on + strand at 150.596 kb on + strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.597 kb on - strand at 150.738 kb on - strand at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.328 kb on + strand, within MPMX19_05996 at 151.329 kb on - strand, within MPMX19_05996 at 151.329 kb on - strand, within MPMX19_05996 at 151.373 kb on + strand, within MPMX19_05996 at 151.373 kb on + strand, within MPMX19_05996 at 151.373 kb on + strand, within MPMX19_05996 at 151.424 kb on + strand at 151.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 148,643 - -0.2 148,643 - +0.3 148,673 - +0.1 148,673 - -0.6 148,673 - -0.3 149,009 + -1.2 149,009 + -0.5 149,141 + -0.4 149,141 + -1.6 149,141 + -0.4 149,141 + -1.7 149,141 + -2.0 149,141 + -0.3 149,141 + -0.7 149,141 + -0.4 149,141 + +0.9 149,141 + +1.4 149,141 + -1.6 149,141 + +0.1 149,141 + -1.0 149,141 + +0.2 149,141 + -1.7 149,141 + +0.4 149,142 - -1.2 149,142 - -1.0 149,142 - -2.3 149,142 - -1.4 149,142 - +0.3 149,142 - -1.3 149,142 - -1.0 149,142 - +0.5 149,142 - -1.2 149,142 - -0.6 149,142 - -1.9 149,142 - -1.6 149,142 - +0.4 149,720 + MPMX19_05995 0.46 +1.0 149,720 + MPMX19_05995 0.46 -0.3 149,720 + MPMX19_05995 0.46 +0.2 149,720 + MPMX19_05995 0.46 -1.3 149,720 + MPMX19_05995 0.46 -0.2 149,721 - MPMX19_05995 0.46 +0.4 149,721 - MPMX19_05995 0.46 -1.4 149,721 - MPMX19_05995 0.46 +0.3 149,721 - MPMX19_05995 0.46 -1.4 149,721 - MPMX19_05995 0.46 -1.0 149,721 - MPMX19_05995 0.46 -0.8 149,729 + MPMX19_05995 0.46 +0.0 149,729 + MPMX19_05995 0.46 -0.4 149,729 + MPMX19_05995 0.46 -1.3 149,729 + MPMX19_05995 0.46 -0.2 149,729 + MPMX19_05995 0.46 -0.5 149,730 - MPMX19_05995 0.46 -0.3 149,730 - MPMX19_05995 0.46 -0.1 149,730 - MPMX19_05995 0.46 +1.3 149,730 - MPMX19_05995 0.46 +1.3 149,730 - MPMX19_05995 0.46 +0.0 149,730 - MPMX19_05995 0.46 -2.4 149,730 - MPMX19_05995 0.46 -0.2 149,730 - MPMX19_05995 0.46 +0.2 149,730 - MPMX19_05995 0.46 +0.0 149,730 - MPMX19_05995 0.46 -0.4 149,730 - MPMX19_05995 0.46 +0.0 149,780 + MPMX19_05995 0.49 +0.1 149,780 + MPMX19_05995 0.49 -1.2 149,780 + MPMX19_05995 0.49 -1.0 149,780 + MPMX19_05995 0.49 +0.9 149,781 - MPMX19_05995 0.49 -1.6 149,822 + MPMX19_05995 0.52 -0.5 149,822 + MPMX19_05995 0.52 +0.0 149,822 + MPMX19_05995 0.52 -1.7 149,822 + MPMX19_05995 0.52 +0.3 149,822 + MPMX19_05995 0.52 -0.4 149,822 + MPMX19_05995 0.52 +0.3 149,822 + MPMX19_05995 0.52 -2.4 149,822 + MPMX19_05995 0.52 -1.6 149,822 + MPMX19_05995 0.52 -1.7 149,822 + MPMX19_05995 0.52 -0.6 149,822 + MPMX19_05995 0.52 -1.2 149,822 + MPMX19_05995 0.52 -0.0 149,823 - MPMX19_05995 0.52 -0.1 149,823 - MPMX19_05995 0.52 -0.9 149,823 - MPMX19_05995 0.52 +0.6 149,823 - MPMX19_05995 0.52 -0.4 149,823 - MPMX19_05995 0.52 -0.2 149,823 - MPMX19_05995 0.52 +0.2 149,823 - MPMX19_05995 0.52 +1.3 149,823 - MPMX19_05995 0.52 +0.8 149,823 - MPMX19_05995 0.52 -2.1 149,823 - MPMX19_05995 0.52 -0.5 149,823 - MPMX19_05995 0.52 -1.9 149,823 - MPMX19_05995 0.52 -1.6 150,551 + -0.6 150,551 + -1.8 150,551 + -0.6 150,551 + -0.4 150,551 + -0.7 150,551 + -0.4 150,551 + +0.6 150,551 + -0.8 150,551 + +0.2 150,551 + +1.3 150,551 + +0.6 150,551 + +0.1 150,551 + -1.0 150,552 - -2.2 150,552 - -1.2 150,552 - +0.0 150,552 - +0.8 150,552 - +0.5 150,552 - -1.4 150,552 - +0.1 150,552 - +1.8 150,552 - -1.4 150,552 - -0.4 150,552 - -0.6 150,552 - -0.5 150,552 - -0.9 150,552 - +0.6 150,586 + -0.4 150,596 + +0.7 150,597 - -0.3 150,597 - +0.4 150,597 - +0.0 150,597 - -0.6 150,597 - -1.0 150,597 - -1.7 150,738 - -0.3 151,328 + MPMX19_05996 0.81 -1.0 151,328 + MPMX19_05996 0.81 -0.2 151,328 + MPMX19_05996 0.81 -1.6 151,328 + MPMX19_05996 0.81 -0.1 151,328 + MPMX19_05996 0.81 -2.0 151,328 + MPMX19_05996 0.81 -1.2 151,328 + MPMX19_05996 0.81 +1.1 151,328 + MPMX19_05996 0.81 -1.9 151,328 + MPMX19_05996 0.81 -0.7 151,328 + MPMX19_05996 0.81 -1.0 151,328 + MPMX19_05996 0.81 +0.7 151,328 + MPMX19_05996 0.81 -0.8 151,328 + MPMX19_05996 0.81 +0.3 151,329 - MPMX19_05996 0.81 +0.6 151,329 - MPMX19_05996 0.81 -0.7 151,373 + MPMX19_05996 0.87 -1.6 151,373 + MPMX19_05996 0.87 +0.4 151,373 + MPMX19_05996 0.87 +0.3 151,424 + +0.4 151,424 + -0.2
Or see this region's nucleotide sequence