Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05952 and MPMX19_05953 are separated by 89 nucleotides MPMX19_05953 and MPMX19_05954 are separated by 87 nucleotides
MPMX19_05952: MPMX19_05952 - hypothetical protein, at 99,275 to 100,270
_05952
MPMX19_05953: MPMX19_05953 - hypothetical protein, at 100,360 to 100,593
_05953
MPMX19_05954: MPMX19_05954 - hypothetical protein, at 100,681 to 103,374
_05954
Position (kb) 100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 99.455 kb on - strand, within MPMX19_05952 at 99.514 kb on - strand, within MPMX19_05952 at 99.514 kb on - strand, within MPMX19_05952 at 99.656 kb on + strand, within MPMX19_05952 at 99.657 kb on - strand, within MPMX19_05952 at 99.657 kb on - strand, within MPMX19_05952 at 99.882 kb on - strand, within MPMX19_05952 at 99.882 kb on - strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.660 kb on + strand at 100.661 kb on - strand at 100.661 kb on - strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.737 kb on - strand at 100.835 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 99,455 - MPMX19_05952 0.18 -0.0 99,514 - MPMX19_05952 0.24 -1.2 99,514 - MPMX19_05952 0.24 -0.0 99,656 + MPMX19_05952 0.38 +0.4 99,657 - MPMX19_05952 0.38 -0.4 99,657 - MPMX19_05952 0.38 -1.1 99,882 - MPMX19_05952 0.61 -0.7 99,882 - MPMX19_05952 0.61 +0.0 100,013 + MPMX19_05952 0.74 +0.1 100,013 + MPMX19_05952 0.74 -0.6 100,013 + MPMX19_05952 0.74 -1.5 100,013 + MPMX19_05952 0.74 +0.2 100,013 + MPMX19_05952 0.74 -1.2 100,013 + MPMX19_05952 0.74 +0.8 100,013 + MPMX19_05952 0.74 -1.3 100,013 + MPMX19_05952 0.74 -1.2 100,013 + MPMX19_05952 0.74 -1.6 100,013 + MPMX19_05952 0.74 +0.8 100,014 - MPMX19_05952 0.74 +0.6 100,014 - MPMX19_05952 0.74 -1.1 100,014 - MPMX19_05952 0.74 +0.1 100,014 - MPMX19_05952 0.74 -1.5 100,014 - MPMX19_05952 0.74 +0.6 100,014 - MPMX19_05952 0.74 +0.2 100,014 - MPMX19_05952 0.74 +0.3 100,097 + MPMX19_05952 0.83 +0.2 100,097 + MPMX19_05952 0.83 -0.7 100,097 + MPMX19_05952 0.83 -1.3 100,098 - MPMX19_05952 0.83 -1.1 100,098 - MPMX19_05952 0.83 -0.7 100,098 - MPMX19_05952 0.83 -3.0 100,660 + -1.1 100,661 - -0.1 100,661 - -0.3 100,709 + -0.3 100,709 + -0.7 100,709 + -0.6 100,710 - +1.1 100,710 - -0.4 100,710 - -1.5 100,710 - -2.2 100,710 - -1.2 100,710 - -0.7 100,737 - -1.4 100,835 + -0.5
Or see this region's nucleotide sequence