Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05495 and MPMX19_05496 are separated by 371 nucleotides MPMX19_05496 and MPMX19_05497 are separated by 1 nucleotides MPMX19_05497 and MPMX19_05498 are separated by 3 nucleotides
MPMX19_05495: MPMX19_05495 - hypothetical protein, at 198,552 to 200,225
_05495
MPMX19_05496: MPMX19_05496 - hypothetical protein, at 200,597 to 200,950
_05496
MPMX19_05497: MPMX19_05497 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 200,952 to 201,662
_05497
MPMX19_05498: MPMX19_05498 - Lipopolysaccharide export system ATP-binding protein LptB, at 201,666 to 202,565
_05498
Position (kb) 200
201 Strain fitness (log2 ratio) -2
-1
0
1 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.876 kb on + strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 199.877 kb on - strand, within MPMX19_05495 at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.092 kb on + strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.093 kb on - strand at 200.288 kb on + strand at 200.289 kb on - strand at 200.289 kb on - strand at 200.355 kb on + strand at 200.355 kb on + strand at 200.381 kb on + strand at 200.389 kb on - strand at 200.393 kb on + strand at 200.564 kb on + strand at 200.649 kb on + strand, within MPMX19_05496 at 200.649 kb on + strand, within MPMX19_05496 at 200.649 kb on + strand, within MPMX19_05496 at 200.649 kb on + strand, within MPMX19_05496 at 200.650 kb on - strand, within MPMX19_05496 at 200.661 kb on + strand, within MPMX19_05496 at 200.662 kb on - strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.820 kb on + strand, within MPMX19_05496 at 200.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 199,876 + MPMX19_05495 0.79 -0.9 199,876 + MPMX19_05495 0.79 -0.6 199,876 + MPMX19_05495 0.79 -1.1 199,876 + MPMX19_05495 0.79 +0.2 199,876 + MPMX19_05495 0.79 -0.4 199,876 + MPMX19_05495 0.79 +0.5 199,876 + MPMX19_05495 0.79 -0.0 199,876 + MPMX19_05495 0.79 +0.5 199,876 + MPMX19_05495 0.79 -1.3 199,876 + MPMX19_05495 0.79 -2.6 199,876 + MPMX19_05495 0.79 -0.6 199,876 + MPMX19_05495 0.79 -0.1 199,876 + MPMX19_05495 0.79 +0.1 199,877 - MPMX19_05495 0.79 -0.6 199,877 - MPMX19_05495 0.79 -1.0 199,877 - MPMX19_05495 0.79 -0.2 199,877 - MPMX19_05495 0.79 +0.5 199,877 - MPMX19_05495 0.79 -0.3 199,877 - MPMX19_05495 0.79 +0.2 199,877 - MPMX19_05495 0.79 -0.8 199,877 - MPMX19_05495 0.79 -1.1 199,877 - MPMX19_05495 0.79 -1.1 200,092 + +0.1 200,092 + -1.1 200,092 + +0.2 200,092 + -2.2 200,092 + +0.1 200,092 + -0.7 200,092 + +0.7 200,092 + +1.2 200,092 + -0.4 200,092 + -0.2 200,093 - +1.3 200,093 - +0.3 200,093 - -1.1 200,093 - -1.8 200,093 - +1.3 200,093 - -1.5 200,288 + -1.0 200,289 - +1.3 200,289 - -1.9 200,355 + -0.1 200,355 + -1.6 200,381 + -0.5 200,389 - -0.9 200,393 + -0.6 200,564 + -1.5 200,649 + MPMX19_05496 0.15 +1.7 200,649 + MPMX19_05496 0.15 -1.5 200,649 + MPMX19_05496 0.15 -0.5 200,649 + MPMX19_05496 0.15 -0.4 200,650 - MPMX19_05496 0.15 +0.0 200,661 + MPMX19_05496 0.18 -0.1 200,662 - MPMX19_05496 0.18 -1.7 200,820 + MPMX19_05496 0.63 -1.2 200,820 + MPMX19_05496 0.63 -2.2 200,820 + MPMX19_05496 0.63 -1.6 200,820 + MPMX19_05496 0.63 +0.4 200,972 - -0.6
Or see this region's nucleotide sequence