Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05493 and MPMX19_05494 are separated by 289 nucleotides MPMX19_05494 and MPMX19_05495 are separated by 184 nucleotides
MPMX19_05493: MPMX19_05493 - hypothetical protein, at 195,181 to 196,899
_05493
MPMX19_05494: MPMX19_05494 - Acyl-CoA dehydrogenase, at 197,189 to 198,367
_05494
MPMX19_05495: MPMX19_05495 - hypothetical protein, at 198,552 to 200,225
_05495
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 196.556 kb on + strand, within MPMX19_05493 at 196.556 kb on + strand, within MPMX19_05493 at 196.556 kb on + strand, within MPMX19_05493 at 196.557 kb on - strand, within MPMX19_05493 at 196.557 kb on - strand, within MPMX19_05493 at 196.557 kb on - strand, within MPMX19_05493 at 196.557 kb on - strand, within MPMX19_05493 at 196.557 kb on - strand, within MPMX19_05493 at 196.647 kb on + strand, within MPMX19_05493 at 196.647 kb on + strand, within MPMX19_05493 at 196.647 kb on + strand, within MPMX19_05493 at 196.694 kb on - strand, within MPMX19_05493 at 196.706 kb on + strand, within MPMX19_05493 at 196.706 kb on + strand, within MPMX19_05493 at 196.706 kb on + strand, within MPMX19_05493 at 196.706 kb on + strand, within MPMX19_05493 at 196.706 kb on + strand, within MPMX19_05493 at 196.706 kb on + strand, within MPMX19_05493 at 196.706 kb on + strand, within MPMX19_05493 at 196.706 kb on + strand, within MPMX19_05493 at 196.707 kb on - strand, within MPMX19_05493 at 196.707 kb on - strand, within MPMX19_05493 at 196.707 kb on - strand, within MPMX19_05493 at 196.707 kb on - strand, within MPMX19_05493 at 196.707 kb on - strand, within MPMX19_05493 at 196.707 kb on - strand, within MPMX19_05493 at 196.707 kb on - strand, within MPMX19_05493 at 196.707 kb on - strand, within MPMX19_05493 at 196.830 kb on + strand at 196.830 kb on + strand at 196.931 kb on - strand at 196.954 kb on + strand at 196.954 kb on + strand at 196.955 kb on - strand at 196.955 kb on - strand at 196.964 kb on + strand at 196.964 kb on + strand at 197.003 kb on - strand at 197.027 kb on + strand at 197.047 kb on + strand at 197.277 kb on - strand at 197.277 kb on - strand at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.396 kb on + strand, within MPMX19_05494 at 197.397 kb on - strand, within MPMX19_05494 at 197.397 kb on - strand, within MPMX19_05494 at 197.397 kb on - strand, within MPMX19_05494 at 197.397 kb on - strand, within MPMX19_05494 at 197.426 kb on + strand, within MPMX19_05494 at 197.516 kb on + strand, within MPMX19_05494 at 197.516 kb on + strand, within MPMX19_05494 at 197.516 kb on + strand, within MPMX19_05494 at 197.516 kb on + strand, within MPMX19_05494 at 197.516 kb on + strand, within MPMX19_05494 at 197.516 kb on + strand, within MPMX19_05494 at 197.517 kb on - strand, within MPMX19_05494 at 197.517 kb on - strand, within MPMX19_05494 at 197.517 kb on - strand, within MPMX19_05494 at 197.522 kb on + strand, within MPMX19_05494 at 197.522 kb on + strand, within MPMX19_05494 at 197.523 kb on - strand, within MPMX19_05494 at 197.663 kb on + strand, within MPMX19_05494 at 197.663 kb on + strand, within MPMX19_05494 at 197.664 kb on - strand, within MPMX19_05494 at 198.003 kb on - strand, within MPMX19_05494 at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.296 kb on + strand at 198.297 kb on - strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.365 kb on + strand at 198.366 kb on - strand at 198.366 kb on - strand at 198.366 kb on - strand at 198.366 kb on - strand at 198.366 kb on - strand at 198.366 kb on - strand at 198.373 kb on + strand at 198.373 kb on + strand at 198.373 kb on + strand at 198.373 kb on + strand at 198.373 kb on + strand at 198.373 kb on + strand at 198.373 kb on + strand at 198.373 kb on + strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand at 198.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 196,556 + MPMX19_05493 0.80 +0.1 196,556 + MPMX19_05493 0.80 -0.8 196,556 + MPMX19_05493 0.80 +0.1 196,557 - MPMX19_05493 0.80 -0.9 196,557 - MPMX19_05493 0.80 +0.7 196,557 - MPMX19_05493 0.80 -0.1 196,557 - MPMX19_05493 0.80 +0.1 196,557 - MPMX19_05493 0.80 -0.0 196,647 + MPMX19_05493 0.85 +0.1 196,647 + MPMX19_05493 0.85 +0.2 196,647 + MPMX19_05493 0.85 -2.2 196,694 - MPMX19_05493 0.88 -0.5 196,706 + MPMX19_05493 0.89 -1.5 196,706 + MPMX19_05493 0.89 +0.1 196,706 + MPMX19_05493 0.89 -0.5 196,706 + MPMX19_05493 0.89 -0.7 196,706 + MPMX19_05493 0.89 -2.8 196,706 + MPMX19_05493 0.89 -0.2 196,706 + MPMX19_05493 0.89 -1.3 196,706 + MPMX19_05493 0.89 -0.1 196,707 - MPMX19_05493 0.89 +0.7 196,707 - MPMX19_05493 0.89 +0.8 196,707 - MPMX19_05493 0.89 -0.2 196,707 - MPMX19_05493 0.89 -1.5 196,707 - MPMX19_05493 0.89 -1.4 196,707 - MPMX19_05493 0.89 +0.2 196,707 - MPMX19_05493 0.89 +0.7 196,707 - MPMX19_05493 0.89 -1.4 196,830 + -1.0 196,830 + -1.3 196,931 - +1.1 196,954 + -2.1 196,954 + -1.6 196,955 - -0.5 196,955 - +0.8 196,964 + -2.3 196,964 + -0.3 197,003 - +0.5 197,027 + +0.3 197,047 + -1.8 197,277 - -0.6 197,277 - -2.1 197,396 + MPMX19_05494 0.18 +1.1 197,396 + MPMX19_05494 0.18 -0.1 197,396 + MPMX19_05494 0.18 +0.6 197,396 + MPMX19_05494 0.18 -0.6 197,396 + MPMX19_05494 0.18 -0.3 197,396 + MPMX19_05494 0.18 -1.6 197,396 + MPMX19_05494 0.18 -0.5 197,396 + MPMX19_05494 0.18 +0.5 197,396 + MPMX19_05494 0.18 -0.0 197,396 + MPMX19_05494 0.18 -1.2 197,396 + MPMX19_05494 0.18 +1.2 197,396 + MPMX19_05494 0.18 +0.7 197,397 - MPMX19_05494 0.18 -0.6 197,397 - MPMX19_05494 0.18 -1.5 197,397 - MPMX19_05494 0.18 -0.3 197,397 - MPMX19_05494 0.18 +0.8 197,426 + MPMX19_05494 0.20 -0.5 197,516 + MPMX19_05494 0.28 -0.1 197,516 + MPMX19_05494 0.28 +0.1 197,516 + MPMX19_05494 0.28 -1.5 197,516 + MPMX19_05494 0.28 +0.6 197,516 + MPMX19_05494 0.28 +0.0 197,516 + MPMX19_05494 0.28 -2.2 197,517 - MPMX19_05494 0.28 -0.9 197,517 - MPMX19_05494 0.28 -0.8 197,517 - MPMX19_05494 0.28 +0.9 197,522 + MPMX19_05494 0.28 +0.0 197,522 + MPMX19_05494 0.28 +0.3 197,523 - MPMX19_05494 0.28 -0.3 197,663 + MPMX19_05494 0.40 +0.8 197,663 + MPMX19_05494 0.40 +0.3 197,664 - MPMX19_05494 0.40 -0.0 198,003 - MPMX19_05494 0.69 -0.3 198,296 + -0.6 198,296 + +0.4 198,296 + +1.7 198,296 + -0.5 198,296 + +0.9 198,296 + -0.3 198,296 + -0.3 198,296 + -0.3 198,296 + +0.0 198,296 + +0.2 198,296 + -0.1 198,296 + +0.5 198,296 + -1.9 198,296 + -1.5 198,296 + -1.4 198,296 + -0.3 198,296 + -1.3 198,296 + +0.7 198,296 + +0.6 198,296 + +0.1 198,296 + -0.9 198,296 + -1.6 198,297 - -0.5 198,365 + -0.2 198,365 + +0.2 198,365 + +0.1 198,365 + -0.4 198,365 + +0.7 198,365 + -0.9 198,365 + +0.7 198,365 + +1.7 198,365 + -0.6 198,365 + -0.2 198,365 + -0.8 198,366 - +0.6 198,366 - +0.0 198,366 - +0.1 198,366 - +0.5 198,366 - +0.1 198,366 - +0.9 198,373 + +0.1 198,373 + +0.1 198,373 + -0.3 198,373 + -0.6 198,373 + -0.9 198,373 + -2.4 198,373 + -1.9 198,373 + -0.6 198,374 - -1.3 198,374 - -0.5 198,374 - -0.5 198,374 - +0.1 198,374 - +0.4 198,374 - +0.2 198,374 - -0.5 198,374 - -0.2 198,374 - -1.7 198,374 - -0.1 198,374 - +0.4 198,374 - -2.1 198,374 - +1.0 198,374 - +0.1 198,374 - -1.3
Or see this region's nucleotide sequence