Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05323 and MPMX19_05324 are separated by 2 nucleotides MPMX19_05324 and MPMX19_05325 are separated by 48 nucleotides MPMX19_05325 and MPMX19_05326 are separated by 84 nucleotides
MPMX19_05323: MPMX19_05323 - hypothetical protein, at 863,846 to 864,961
_05323
MPMX19_05324: MPMX19_05324 - hypothetical protein, at 864,964 to 866,112
_05324
MPMX19_05325: MPMX19_05325 - S-formylglutathione hydrolase YeiG, at 866,161 to 867,012
_05325
MPMX19_05326: MPMX19_05326 - S-(hydroxymethyl)glutathione dehydrogenase, at 867,097 to 868,215
_05326
Position (kb)
864
865
866
867 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 864.023 kb on + strand, within MPMX19_05323 at 864.024 kb on - strand, within MPMX19_05323 at 864.024 kb on - strand, within MPMX19_05323 at 864.032 kb on - strand, within MPMX19_05323 at 864.371 kb on + strand, within MPMX19_05323 at 864.371 kb on + strand, within MPMX19_05323 at 864.372 kb on - strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.521 kb on + strand, within MPMX19_05323 at 864.522 kb on - strand, within MPMX19_05323 at 864.522 kb on - strand, within MPMX19_05323 at 864.522 kb on - strand, within MPMX19_05323 at 864.522 kb on - strand, within MPMX19_05323 at 864.522 kb on - strand, within MPMX19_05323 at 864.522 kb on - strand, within MPMX19_05323 at 865.105 kb on + strand, within MPMX19_05324 at 865.105 kb on + strand, within MPMX19_05324 at 865.105 kb on + strand, within MPMX19_05324 at 865.106 kb on - strand, within MPMX19_05324 at 865.106 kb on - strand, within MPMX19_05324 at 865.106 kb on - strand, within MPMX19_05324 at 865.117 kb on + strand, within MPMX19_05324 at 865.117 kb on + strand, within MPMX19_05324 at 865.117 kb on + strand, within MPMX19_05324 at 865.117 kb on + strand, within MPMX19_05324 at 865.117 kb on + strand, within MPMX19_05324 at 865.118 kb on - strand, within MPMX19_05324 at 865.118 kb on - strand, within MPMX19_05324 at 865.118 kb on - strand, within MPMX19_05324 at 865.118 kb on - strand, within MPMX19_05324 at 865.118 kb on - strand, within MPMX19_05324 at 865.361 kb on - strand, within MPMX19_05324 at 865.432 kb on + strand, within MPMX19_05324 at 865.432 kb on + strand, within MPMX19_05324 at 865.432 kb on + strand, within MPMX19_05324 at 865.432 kb on + strand, within MPMX19_05324 at 865.432 kb on + strand, within MPMX19_05324 at 865.433 kb on - strand, within MPMX19_05324 at 865.433 kb on - strand, within MPMX19_05324 at 865.433 kb on - strand, within MPMX19_05324 at 865.450 kb on + strand, within MPMX19_05324 at 865.450 kb on + strand, within MPMX19_05324 at 865.450 kb on + strand, within MPMX19_05324 at 865.451 kb on - strand, within MPMX19_05324 at 865.451 kb on - strand, within MPMX19_05324 at 865.451 kb on - strand, within MPMX19_05324 at 865.451 kb on - strand, within MPMX19_05324 at 865.612 kb on + strand, within MPMX19_05324 at 865.612 kb on + strand, within MPMX19_05324 at 865.612 kb on + strand, within MPMX19_05324 at 865.612 kb on + strand, within MPMX19_05324 at 865.612 kb on + strand, within MPMX19_05324 at 865.612 kb on + strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.613 kb on - strand, within MPMX19_05324 at 865.843 kb on + strand, within MPMX19_05324 at 865.843 kb on + strand, within MPMX19_05324 at 865.843 kb on + strand, within MPMX19_05324 at 865.843 kb on + strand, within MPMX19_05324 at 865.843 kb on + strand, within MPMX19_05324 at 865.843 kb on + strand, within MPMX19_05324 at 865.843 kb on + strand, within MPMX19_05324 at 865.843 kb on + strand, within MPMX19_05324 at 865.844 kb on - strand, within MPMX19_05324 at 865.844 kb on - strand, within MPMX19_05324 at 865.844 kb on - strand, within MPMX19_05324 at 865.844 kb on - strand, within MPMX19_05324 at 865.844 kb on - strand, within MPMX19_05324 at 865.844 kb on - strand, within MPMX19_05324 at 865.844 kb on - strand, within MPMX19_05324 at 865.845 kb on + strand, within MPMX19_05324 at 865.846 kb on - strand, within MPMX19_05324 at 865.846 kb on - strand, within MPMX19_05324 at 865.846 kb on - strand, within MPMX19_05324 at 865.846 kb on - strand, within MPMX19_05324 at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.226 kb on - strand at 866.237 kb on + strand at 866.237 kb on + strand at 866.237 kb on + strand at 866.238 kb on - strand at 866.432 kb on + strand, within MPMX19_05325 at 866.507 kb on + strand, within MPMX19_05325 at 866.507 kb on + strand, within MPMX19_05325 at 866.507 kb on + strand, within MPMX19_05325 at 866.508 kb on - strand, within MPMX19_05325 at 866.508 kb on - strand, within MPMX19_05325 at 866.508 kb on - strand, within MPMX19_05325 at 866.508 kb on - strand, within MPMX19_05325 at 866.595 kb on - strand, within MPMX19_05325 at 866.633 kb on + strand, within MPMX19_05325 at 866.633 kb on + strand, within MPMX19_05325 at 866.633 kb on + strand, within MPMX19_05325 at 866.633 kb on + strand, within MPMX19_05325 at 866.633 kb on + strand, within MPMX19_05325 at 866.634 kb on - strand, within MPMX19_05325 at 866.634 kb on - strand, within MPMX19_05325 at 866.634 kb on - strand, within MPMX19_05325 at 866.634 kb on - strand, within MPMX19_05325 at 866.634 kb on - strand, within MPMX19_05325 at 866.634 kb on - strand, within MPMX19_05325 at 866.684 kb on + strand, within MPMX19_05325 at 866.684 kb on + strand, within MPMX19_05325 at 866.684 kb on + strand, within MPMX19_05325 at 866.685 kb on - strand, within MPMX19_05325 at 866.858 kb on + strand, within MPMX19_05325 at 866.858 kb on + strand, within MPMX19_05325 at 866.858 kb on + strand, within MPMX19_05325 at 866.858 kb on + strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.859 kb on - strand, within MPMX19_05325 at 866.861 kb on - strand, within MPMX19_05325 at 867.107 kb on + strand at 867.107 kb on + strand at 867.107 kb on + strand at 867.107 kb on + strand at 867.108 kb on - strand at 867.108 kb on - strand at 867.108 kb on - strand at 867.108 kb on - strand at 867.108 kb on - strand at 867.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 864,023 + MPMX19_05323 0.16 +0.7 864,024 - MPMX19_05323 0.16 +0.0 864,024 - MPMX19_05323 0.16 -1.1 864,032 - MPMX19_05323 0.17 +0.3 864,371 + MPMX19_05323 0.47 +0.4 864,371 + MPMX19_05323 0.47 +0.6 864,372 - MPMX19_05323 0.47 -0.5 864,521 + MPMX19_05323 0.60 +0.3 864,521 + MPMX19_05323 0.60 +0.6 864,521 + MPMX19_05323 0.60 +0.3 864,521 + MPMX19_05323 0.60 -0.8 864,521 + MPMX19_05323 0.60 +0.1 864,521 + MPMX19_05323 0.60 +0.6 864,521 + MPMX19_05323 0.60 -1.1 864,521 + MPMX19_05323 0.60 -1.6 864,521 + MPMX19_05323 0.60 -2.2 864,521 + MPMX19_05323 0.60 -0.8 864,521 + MPMX19_05323 0.60 -1.8 864,521 + MPMX19_05323 0.60 -0.6 864,521 + MPMX19_05323 0.60 +0.7 864,521 + MPMX19_05323 0.60 -0.5 864,521 + MPMX19_05323 0.60 -0.1 864,521 + MPMX19_05323 0.60 +1.1 864,521 + MPMX19_05323 0.60 -0.7 864,522 - MPMX19_05323 0.61 +0.3 864,522 - MPMX19_05323 0.61 -0.8 864,522 - MPMX19_05323 0.61 +0.5 864,522 - MPMX19_05323 0.61 -1.4 864,522 - MPMX19_05323 0.61 -0.4 864,522 - MPMX19_05323 0.61 +0.4 865,105 + MPMX19_05324 0.12 -0.9 865,105 + MPMX19_05324 0.12 +1.2 865,105 + MPMX19_05324 0.12 -0.3 865,106 - MPMX19_05324 0.12 -0.1 865,106 - MPMX19_05324 0.12 -0.1 865,106 - MPMX19_05324 0.12 +0.4 865,117 + MPMX19_05324 0.13 -1.6 865,117 + MPMX19_05324 0.13 +0.6 865,117 + MPMX19_05324 0.13 -1.1 865,117 + MPMX19_05324 0.13 -0.8 865,117 + MPMX19_05324 0.13 +1.1 865,118 - MPMX19_05324 0.13 +1.1 865,118 - MPMX19_05324 0.13 +0.7 865,118 - MPMX19_05324 0.13 +0.4 865,118 - MPMX19_05324 0.13 +0.1 865,118 - MPMX19_05324 0.13 -0.1 865,361 - MPMX19_05324 0.35 -1.3 865,432 + MPMX19_05324 0.41 -0.2 865,432 + MPMX19_05324 0.41 +0.2 865,432 + MPMX19_05324 0.41 +0.2 865,432 + MPMX19_05324 0.41 -1.3 865,432 + MPMX19_05324 0.41 +1.5 865,433 - MPMX19_05324 0.41 -0.0 865,433 - MPMX19_05324 0.41 -1.4 865,433 - MPMX19_05324 0.41 +0.5 865,450 + MPMX19_05324 0.42 -1.3 865,450 + MPMX19_05324 0.42 -0.6 865,450 + MPMX19_05324 0.42 -0.8 865,451 - MPMX19_05324 0.42 +0.3 865,451 - MPMX19_05324 0.42 -0.5 865,451 - MPMX19_05324 0.42 +0.9 865,451 - MPMX19_05324 0.42 +0.2 865,612 + MPMX19_05324 0.56 +0.5 865,612 + MPMX19_05324 0.56 -0.6 865,612 + MPMX19_05324 0.56 -0.5 865,612 + MPMX19_05324 0.56 -0.1 865,612 + MPMX19_05324 0.56 +1.1 865,612 + MPMX19_05324 0.56 -1.3 865,613 - MPMX19_05324 0.56 -1.6 865,613 - MPMX19_05324 0.56 -0.1 865,613 - MPMX19_05324 0.56 +0.3 865,613 - MPMX19_05324 0.56 -0.9 865,613 - MPMX19_05324 0.56 +0.8 865,613 - MPMX19_05324 0.56 -0.5 865,613 - MPMX19_05324 0.56 -0.3 865,613 - MPMX19_05324 0.56 -0.6 865,613 - MPMX19_05324 0.56 +0.3 865,613 - MPMX19_05324 0.56 +0.4 865,613 - MPMX19_05324 0.56 +1.7 865,843 + MPMX19_05324 0.77 -1.3 865,843 + MPMX19_05324 0.77 -0.2 865,843 + MPMX19_05324 0.77 +0.2 865,843 + MPMX19_05324 0.77 -0.4 865,843 + MPMX19_05324 0.77 +0.1 865,843 + MPMX19_05324 0.77 -1.1 865,843 + MPMX19_05324 0.77 -0.6 865,843 + MPMX19_05324 0.77 +0.5 865,844 - MPMX19_05324 0.77 -0.4 865,844 - MPMX19_05324 0.77 +2.0 865,844 - MPMX19_05324 0.77 -1.1 865,844 - MPMX19_05324 0.77 +0.7 865,844 - MPMX19_05324 0.77 -0.8 865,844 - MPMX19_05324 0.77 -0.2 865,844 - MPMX19_05324 0.77 -1.1 865,845 + MPMX19_05324 0.77 -0.1 865,846 - MPMX19_05324 0.77 +2.1 865,846 - MPMX19_05324 0.77 -0.9 865,846 - MPMX19_05324 0.77 +0.3 865,846 - MPMX19_05324 0.77 -0.5 866,225 + -1.9 866,225 + -1.1 866,225 + -0.6 866,225 + -0.4 866,225 + -1.2 866,225 + -0.3 866,225 + +1.0 866,225 + -1.1 866,225 + +0.3 866,225 + -0.4 866,225 + -1.1 866,225 + -1.1 866,225 + -0.5 866,225 + +0.3 866,225 + +1.1 866,225 + -1.2 866,225 + -1.6 866,225 + -0.1 866,225 + -0.4 866,225 + -0.1 866,226 - -0.7 866,226 - -1.4 866,226 - +0.5 866,226 - +0.0 866,226 - -0.6 866,226 - +0.1 866,226 - -2.2 866,226 - -1.1 866,226 - -0.3 866,226 - -1.6 866,226 - -0.1 866,226 - -0.2 866,226 - -0.8 866,237 + -0.2 866,237 + -0.3 866,237 + +0.5 866,238 - +1.2 866,432 + MPMX19_05325 0.32 -0.9 866,507 + MPMX19_05325 0.41 +1.3 866,507 + MPMX19_05325 0.41 -0.3 866,507 + MPMX19_05325 0.41 +0.0 866,508 - MPMX19_05325 0.41 -0.5 866,508 - MPMX19_05325 0.41 -0.3 866,508 - MPMX19_05325 0.41 -0.1 866,508 - MPMX19_05325 0.41 -1.3 866,595 - MPMX19_05325 0.51 -0.9 866,633 + MPMX19_05325 0.55 -1.8 866,633 + MPMX19_05325 0.55 +0.1 866,633 + MPMX19_05325 0.55 -1.9 866,633 + MPMX19_05325 0.55 +0.6 866,633 + MPMX19_05325 0.55 +0.9 866,634 - MPMX19_05325 0.56 -0.3 866,634 - MPMX19_05325 0.56 -0.3 866,634 - MPMX19_05325 0.56 -1.4 866,634 - MPMX19_05325 0.56 +0.4 866,634 - MPMX19_05325 0.56 +1.3 866,634 - MPMX19_05325 0.56 -0.9 866,684 + MPMX19_05325 0.61 -0.2 866,684 + MPMX19_05325 0.61 -0.5 866,684 + MPMX19_05325 0.61 -0.4 866,685 - MPMX19_05325 0.62 +0.5 866,858 + MPMX19_05325 0.82 -0.7 866,858 + MPMX19_05325 0.82 -1.1 866,858 + MPMX19_05325 0.82 +0.6 866,858 + MPMX19_05325 0.82 -0.3 866,859 - MPMX19_05325 0.82 +0.4 866,859 - MPMX19_05325 0.82 -0.4 866,859 - MPMX19_05325 0.82 -0.4 866,859 - MPMX19_05325 0.82 -0.1 866,859 - MPMX19_05325 0.82 -0.9 866,859 - MPMX19_05325 0.82 -1.2 866,859 - MPMX19_05325 0.82 -1.1 866,859 - MPMX19_05325 0.82 -0.1 866,859 - MPMX19_05325 0.82 -0.5 866,859 - MPMX19_05325 0.82 -1.6 866,861 - MPMX19_05325 0.82 -1.3 867,107 + -1.4 867,107 + -0.6 867,107 + -0.7 867,107 + -0.7 867,108 - -3.1 867,108 - -1.6 867,108 - -0.9 867,108 - -0.3 867,108 - -0.8 867,108 - +0.4
Or see this region's nucleotide sequence