Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05283

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05282 and MPMX19_05283 are separated by 164 nucleotidesMPMX19_05283 and MPMX19_05284 are separated by 335 nucleotidesMPMX19_05284 and MPMX19_05285 are separated by 146 nucleotides MPMX19_05282: MPMX19_05282 - 1,3,6,8-tetrahydroxynaphthalene synthase, at 815,291 to 816,349 _05282 MPMX19_05283: MPMX19_05283 - C4-dicarboxylic acid transporter DauA, at 816,514 to 818,001 _05283 MPMX19_05284: MPMX19_05284 - hypothetical protein, at 818,337 to 818,597 _05284 MPMX19_05285: MPMX19_05285 - Carbamoyltransferase HypF, at 818,744 to 820,951 _05285 Position (kb) 816 817 818 819Strain fitness (log2 ratio) -3 -2 -1 0 1at 816.162 kb on + strand, within MPMX19_05282at 816.162 kb on + strand, within MPMX19_05282at 816.162 kb on + strand, within MPMX19_05282at 816.162 kb on + strand, within MPMX19_05282at 816.162 kb on + strand, within MPMX19_05282at 816.163 kb on - strand, within MPMX19_05282at 816.163 kb on - strand, within MPMX19_05282at 816.163 kb on - strand, within MPMX19_05282at 816.163 kb on - strand, within MPMX19_05282at 816.681 kb on + strand, within MPMX19_05283at 816.681 kb on + strand, within MPMX19_05283at 816.681 kb on + strand, within MPMX19_05283at 816.681 kb on + strand, within MPMX19_05283at 816.681 kb on + strand, within MPMX19_05283at 816.681 kb on + strand, within MPMX19_05283at 816.681 kb on + strand, within MPMX19_05283at 816.681 kb on + strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.682 kb on - strand, within MPMX19_05283at 816.788 kb on + strand, within MPMX19_05283at 816.788 kb on + strand, within MPMX19_05283at 816.788 kb on + strand, within MPMX19_05283at 816.788 kb on + strand, within MPMX19_05283at 816.789 kb on - strand, within MPMX19_05283at 816.789 kb on - strand, within MPMX19_05283at 816.789 kb on - strand, within MPMX19_05283at 817.328 kb on + strand, within MPMX19_05283at 817.328 kb on + strand, within MPMX19_05283at 817.328 kb on + strand, within MPMX19_05283at 817.328 kb on + strand, within MPMX19_05283at 817.329 kb on - strand, within MPMX19_05283at 817.329 kb on - strand, within MPMX19_05283at 817.329 kb on - strand, within MPMX19_05283at 817.329 kb on - strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.520 kb on + strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.521 kb on - strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.553 kb on + strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.554 kb on - strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.730 kb on + strand, within MPMX19_05283at 817.731 kb on - strand, within MPMX19_05283at 817.731 kb on - strand, within MPMX19_05283at 817.731 kb on - strand, within MPMX19_05283at 817.731 kb on - strand, within MPMX19_05283at 817.785 kb on + strand, within MPMX19_05283at 817.785 kb on + strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.786 kb on - strand, within MPMX19_05283at 817.853 kb on + strandat 817.853 kb on + strandat 817.854 kb on - strandat 817.854 kb on - strandat 817.854 kb on - strandat 818.212 kb on + strandat 818.213 kb on - strandat 818.664 kb on + strandat 818.856 kb on + strandat 818.856 kb on + strandat 818.857 kb on - strandat 818.857 kb on - strandat 818.857 kb on - strandat 818.857 kb on - strandat 818.857 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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816,162 + MPMX19_05282 0.82 +0.7
816,162 + MPMX19_05282 0.82 -0.2
816,162 + MPMX19_05282 0.82 -2.2
816,162 + MPMX19_05282 0.82 +1.1
816,162 + MPMX19_05282 0.82 -0.6
816,163 - MPMX19_05282 0.82 +0.2
816,163 - MPMX19_05282 0.82 +0.3
816,163 - MPMX19_05282 0.82 +1.5
816,163 - MPMX19_05282 0.82 -0.1
816,681 + MPMX19_05283 0.11 -0.1
816,681 + MPMX19_05283 0.11 +0.5
816,681 + MPMX19_05283 0.11 -2.2
816,681 + MPMX19_05283 0.11 -0.2
816,681 + MPMX19_05283 0.11 -2.2
816,681 + MPMX19_05283 0.11 +0.3
816,681 + MPMX19_05283 0.11 -0.2
816,681 + MPMX19_05283 0.11 -1.2
816,682 - MPMX19_05283 0.11 -1.9
816,682 - MPMX19_05283 0.11 -0.4
816,682 - MPMX19_05283 0.11 -1.9
816,682 - MPMX19_05283 0.11 -0.8
816,682 - MPMX19_05283 0.11 -2.7
816,682 - MPMX19_05283 0.11 -1.1
816,682 - MPMX19_05283 0.11 -0.7
816,682 - MPMX19_05283 0.11 +0.1
816,682 - MPMX19_05283 0.11 -0.6
816,682 - MPMX19_05283 0.11 -1.4
816,788 + MPMX19_05283 0.18 -1.0
816,788 + MPMX19_05283 0.18 -0.8
816,788 + MPMX19_05283 0.18 +0.2
816,788 + MPMX19_05283 0.18 -1.3
816,789 - MPMX19_05283 0.18 -0.6
816,789 - MPMX19_05283 0.18 -0.2
816,789 - MPMX19_05283 0.18 +0.8
817,328 + MPMX19_05283 0.55 -1.2
817,328 + MPMX19_05283 0.55 -0.1
817,328 + MPMX19_05283 0.55 -1.6
817,328 + MPMX19_05283 0.55 -1.1
817,329 - MPMX19_05283 0.55 +0.3
817,329 - MPMX19_05283 0.55 -1.9
817,329 - MPMX19_05283 0.55 -0.2
817,329 - MPMX19_05283 0.55 -1.3
817,520 + MPMX19_05283 0.68 -0.8
817,520 + MPMX19_05283 0.68 -0.3
817,520 + MPMX19_05283 0.68 -0.3
817,520 + MPMX19_05283 0.68 +1.5
817,520 + MPMX19_05283 0.68 +0.1
817,520 + MPMX19_05283 0.68 -0.3
817,520 + MPMX19_05283 0.68 +0.5
817,520 + MPMX19_05283 0.68 -0.4
817,520 + MPMX19_05283 0.68 +0.2
817,520 + MPMX19_05283 0.68 +1.5
817,520 + MPMX19_05283 0.68 +0.3
817,521 - MPMX19_05283 0.68 -0.3
817,521 - MPMX19_05283 0.68 +0.6
817,521 - MPMX19_05283 0.68 +0.5
817,521 - MPMX19_05283 0.68 -1.1
817,521 - MPMX19_05283 0.68 -1.1
817,521 - MPMX19_05283 0.68 -0.7
817,521 - MPMX19_05283 0.68 -0.6
817,521 - MPMX19_05283 0.68 +0.4
817,521 - MPMX19_05283 0.68 +0.1
817,521 - MPMX19_05283 0.68 -0.9
817,521 - MPMX19_05283 0.68 -1.1
817,521 - MPMX19_05283 0.68 +0.8
817,521 - MPMX19_05283 0.68 -0.4
817,521 - MPMX19_05283 0.68 -0.6
817,521 - MPMX19_05283 0.68 -0.6
817,521 - MPMX19_05283 0.68 +0.4
817,521 - MPMX19_05283 0.68 +1.5
817,521 - MPMX19_05283 0.68 -1.4
817,553 + MPMX19_05283 0.70 +0.3
817,553 + MPMX19_05283 0.70 -0.4
817,553 + MPMX19_05283 0.70 -0.6
817,553 + MPMX19_05283 0.70 -1.3
817,553 + MPMX19_05283 0.70 -0.6
817,553 + MPMX19_05283 0.70 -0.5
817,553 + MPMX19_05283 0.70 -1.1
817,553 + MPMX19_05283 0.70 +1.5
817,553 + MPMX19_05283 0.70 -1.0
817,553 + MPMX19_05283 0.70 -1.1
817,554 - MPMX19_05283 0.70 -0.8
817,554 - MPMX19_05283 0.70 -0.6
817,554 - MPMX19_05283 0.70 +0.6
817,554 - MPMX19_05283 0.70 +0.2
817,554 - MPMX19_05283 0.70 -0.6
817,554 - MPMX19_05283 0.70 -0.8
817,554 - MPMX19_05283 0.70 +0.4
817,554 - MPMX19_05283 0.70 -0.1
817,554 - MPMX19_05283 0.70 -0.3
817,554 - MPMX19_05283 0.70 -1.1
817,554 - MPMX19_05283 0.70 -1.7
817,554 - MPMX19_05283 0.70 -0.5
817,554 - MPMX19_05283 0.70 +0.4
817,730 + MPMX19_05283 0.82 -2.1
817,730 + MPMX19_05283 0.82 -0.4
817,730 + MPMX19_05283 0.82 +0.3
817,730 + MPMX19_05283 0.82 -0.7
817,730 + MPMX19_05283 0.82 -2.2
817,730 + MPMX19_05283 0.82 -0.3
817,731 - MPMX19_05283 0.82 -0.8
817,731 - MPMX19_05283 0.82 +0.6
817,731 - MPMX19_05283 0.82 -1.1
817,731 - MPMX19_05283 0.82 -1.4
817,785 + MPMX19_05283 0.85 +0.1
817,785 + MPMX19_05283 0.85 +0.9
817,786 - MPMX19_05283 0.85 +0.4
817,786 - MPMX19_05283 0.85 -0.6
817,786 - MPMX19_05283 0.85 -2.4
817,786 - MPMX19_05283 0.85 -0.2
817,786 - MPMX19_05283 0.85 -0.3
817,786 - MPMX19_05283 0.85 -0.4
817,853 + +0.2
817,853 + -1.1
817,854 - -1.6
817,854 - -1.2
817,854 - -0.9
818,212 + -1.7
818,213 - -1.8
818,664 + -0.0
818,856 + -0.1
818,856 + -2.2
818,857 - -1.6
818,857 - -0.6
818,857 - -0.4
818,857 - -2.9
818,857 - +0.1

Or see this region's nucleotide sequence