Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05185 and MPMX19_05186 are separated by 20 nucleotides MPMX19_05186 and MPMX19_05187 are separated by 15 nucleotides MPMX19_05187 and MPMX19_05188 are separated by 12 nucleotides
MPMX19_05185: MPMX19_05185 - hypothetical protein, at 688,252 to 689,301
_05185
MPMX19_05186: MPMX19_05186 - Thiosulfate sulfurtransferase GlpE, at 689,322 to 690,953
_05186
MPMX19_05187: MPMX19_05187 - 3-mercaptopropionate dioxygenase, at 690,969 to 691,607
_05187
MPMX19_05188: MPMX19_05188 - Aliphatic sulfonates import ATP-binding protein SsuB, at 691,620 to 692,414
_05188
Position (kb) 689
690
691 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 688.380 kb on - strand, within MPMX19_05185 at 688.451 kb on + strand, within MPMX19_05185 at 688.451 kb on + strand, within MPMX19_05185 at 688.451 kb on + strand, within MPMX19_05185 at 688.451 kb on + strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.605 kb on - strand, within MPMX19_05185 at 688.605 kb on - strand, within MPMX19_05185 at 688.814 kb on + strand, within MPMX19_05185 at 688.814 kb on + strand, within MPMX19_05185 at 688.814 kb on + strand, within MPMX19_05185 at 688.815 kb on - strand, within MPMX19_05185 at 688.815 kb on - strand, within MPMX19_05185 at 688.843 kb on - strand, within MPMX19_05185 at 688.901 kb on + strand, within MPMX19_05185 at 688.901 kb on + strand, within MPMX19_05185 at 688.901 kb on + strand, within MPMX19_05185 at 688.901 kb on + strand, within MPMX19_05185 at 688.902 kb on - strand, within MPMX19_05185 at 688.960 kb on - strand, within MPMX19_05185 at 688.974 kb on + strand, within MPMX19_05185 at 689.075 kb on + strand, within MPMX19_05185 at 689.075 kb on + strand, within MPMX19_05185 at 689.075 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.159 kb on + strand, within MPMX19_05185 at 689.159 kb on + strand, within MPMX19_05185 at 689.160 kb on - strand, within MPMX19_05185 at 689.393 kb on - strand at 689.393 kb on - strand at 689.393 kb on - strand at 689.393 kb on - strand at 689.393 kb on - strand at 689.393 kb on - strand at 689.443 kb on + strand at 689.443 kb on + strand at 689.587 kb on + strand, within MPMX19_05186 at 689.588 kb on - strand, within MPMX19_05186 at 689.588 kb on - strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.990 kb on - strand, within MPMX19_05186 at 689.990 kb on - strand, within MPMX19_05186 at 689.990 kb on - strand, within MPMX19_05186 at 689.990 kb on - strand, within MPMX19_05186 at 690.058 kb on + strand, within MPMX19_05186 at 690.058 kb on + strand, within MPMX19_05186 at 690.058 kb on + strand, within MPMX19_05186 at 690.058 kb on + strand, within MPMX19_05186 at 690.071 kb on + strand, within MPMX19_05186 at 690.072 kb on - strand, within MPMX19_05186 at 690.072 kb on - strand, within MPMX19_05186 at 690.466 kb on + strand, within MPMX19_05186 at 690.466 kb on + strand, within MPMX19_05186 at 690.466 kb on + strand, within MPMX19_05186 at 690.467 kb on - strand, within MPMX19_05186 at 690.677 kb on - strand, within MPMX19_05186 at 690.716 kb on - strand, within MPMX19_05186 at 690.716 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.772 kb on + strand, within MPMX19_05186 at 690.772 kb on + strand, within MPMX19_05186 at 690.773 kb on - strand, within MPMX19_05186 at 690.773 kb on - strand, within MPMX19_05186 at 690.835 kb on + strand at 690.835 kb on + strand at 690.836 kb on - strand at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.258 kb on + strand, within MPMX19_05187 at 691.258 kb on + strand, within MPMX19_05187 at 691.258 kb on + strand, within MPMX19_05187 at 691.259 kb on - strand, within MPMX19_05187 at 691.376 kb on - strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 688,380 - MPMX19_05185 0.12 +1.5 688,451 + MPMX19_05185 0.19 -1.8 688,451 + MPMX19_05185 0.19 -0.2 688,451 + MPMX19_05185 0.19 -0.6 688,451 + MPMX19_05185 0.19 +0.0 688,452 - MPMX19_05185 0.19 -0.3 688,452 - MPMX19_05185 0.19 +0.2 688,452 - MPMX19_05185 0.19 -1.1 688,452 - MPMX19_05185 0.19 -0.1 688,452 - MPMX19_05185 0.19 -1.6 688,452 - MPMX19_05185 0.19 +0.2 688,452 - MPMX19_05185 0.19 +0.9 688,605 - MPMX19_05185 0.34 -1.8 688,605 - MPMX19_05185 0.34 +0.2 688,814 + MPMX19_05185 0.54 -0.2 688,814 + MPMX19_05185 0.54 -1.6 688,814 + MPMX19_05185 0.54 -1.8 688,815 - MPMX19_05185 0.54 +0.3 688,815 - MPMX19_05185 0.54 -1.3 688,843 - MPMX19_05185 0.56 -1.1 688,901 + MPMX19_05185 0.62 -0.5 688,901 + MPMX19_05185 0.62 +0.1 688,901 + MPMX19_05185 0.62 +1.1 688,901 + MPMX19_05185 0.62 +0.1 688,902 - MPMX19_05185 0.62 +2.1 688,960 - MPMX19_05185 0.67 -0.1 688,974 + MPMX19_05185 0.69 -1.6 689,075 + MPMX19_05185 0.78 -0.1 689,075 + MPMX19_05185 0.78 -1.3 689,075 + MPMX19_05185 0.78 -1.1 689,147 + MPMX19_05185 0.85 -0.8 689,147 + MPMX19_05185 0.85 -1.4 689,147 + MPMX19_05185 0.85 -0.1 689,147 + MPMX19_05185 0.85 -3.2 689,147 + MPMX19_05185 0.85 -0.5 689,147 + MPMX19_05185 0.85 -0.3 689,147 + MPMX19_05185 0.85 -0.2 689,147 + MPMX19_05185 0.85 +0.2 689,148 - MPMX19_05185 0.85 +0.1 689,148 - MPMX19_05185 0.85 +0.2 689,148 - MPMX19_05185 0.85 -0.4 689,148 - MPMX19_05185 0.85 -0.5 689,148 - MPMX19_05185 0.85 -0.1 689,148 - MPMX19_05185 0.85 +0.2 689,148 - MPMX19_05185 0.85 -0.3 689,148 - MPMX19_05185 0.85 +0.2 689,148 - MPMX19_05185 0.85 -0.3 689,148 - MPMX19_05185 0.85 -0.2 689,159 + MPMX19_05185 0.86 -1.6 689,159 + MPMX19_05185 0.86 -0.1 689,160 - MPMX19_05185 0.86 +0.2 689,393 - -0.1 689,393 - -0.1 689,393 - -0.5 689,393 - +0.9 689,393 - -0.8 689,393 - -1.8 689,443 + +0.1 689,443 + +0.7 689,587 + MPMX19_05186 0.16 +0.2 689,588 - MPMX19_05186 0.16 -0.5 689,588 - MPMX19_05186 0.16 +0.3 689,683 + MPMX19_05186 0.22 +1.1 689,683 + MPMX19_05186 0.22 -0.7 689,683 + MPMX19_05186 0.22 +0.5 689,683 + MPMX19_05186 0.22 -2.6 689,683 + MPMX19_05186 0.22 +1.5 689,683 + MPMX19_05186 0.22 +0.5 689,990 - MPMX19_05186 0.41 -0.3 689,990 - MPMX19_05186 0.41 -0.7 689,990 - MPMX19_05186 0.41 +0.5 689,990 - MPMX19_05186 0.41 -1.3 690,058 + MPMX19_05186 0.45 -0.1 690,058 + MPMX19_05186 0.45 +0.7 690,058 + MPMX19_05186 0.45 -1.1 690,058 + MPMX19_05186 0.45 +0.8 690,071 + MPMX19_05186 0.46 -0.1 690,072 - MPMX19_05186 0.46 -0.4 690,072 - MPMX19_05186 0.46 +0.1 690,466 + MPMX19_05186 0.70 +1.5 690,466 + MPMX19_05186 0.70 -1.1 690,466 + MPMX19_05186 0.70 -0.2 690,467 - MPMX19_05186 0.70 +1.2 690,677 - MPMX19_05186 0.83 -0.5 690,716 - MPMX19_05186 0.85 +0.2 690,716 - MPMX19_05186 0.85 -0.1 690,734 - MPMX19_05186 0.87 -0.7 690,734 - MPMX19_05186 0.87 +1.4 690,734 - MPMX19_05186 0.87 +1.5 690,734 - MPMX19_05186 0.87 -1.4 690,734 - MPMX19_05186 0.87 +1.8 690,734 - MPMX19_05186 0.87 +0.1 690,772 + MPMX19_05186 0.89 -0.6 690,772 + MPMX19_05186 0.89 +2.5 690,773 - MPMX19_05186 0.89 +0.9 690,773 - MPMX19_05186 0.89 -0.6 690,835 + +1.0 690,835 + -0.5 690,836 - -0.0 691,108 + MPMX19_05187 0.22 +0.4 691,108 + MPMX19_05187 0.22 +0.9 691,108 + MPMX19_05187 0.22 -1.0 691,108 + MPMX19_05187 0.22 +1.1 691,108 + MPMX19_05187 0.22 -0.2 691,108 + MPMX19_05187 0.22 -0.5 691,108 + MPMX19_05187 0.22 -0.2 691,108 + MPMX19_05187 0.22 -0.3 691,109 - MPMX19_05187 0.22 +0.4 691,109 - MPMX19_05187 0.22 +1.4 691,109 - MPMX19_05187 0.22 -0.3 691,109 - MPMX19_05187 0.22 -0.1 691,109 - MPMX19_05187 0.22 +1.5 691,109 - MPMX19_05187 0.22 -2.6 691,109 - MPMX19_05187 0.22 -0.3 691,109 - MPMX19_05187 0.22 +0.2 691,109 - MPMX19_05187 0.22 -0.6 691,258 + MPMX19_05187 0.45 +0.0 691,258 + MPMX19_05187 0.45 +0.1 691,258 + MPMX19_05187 0.45 +1.3 691,259 - MPMX19_05187 0.45 -0.5 691,376 - MPMX19_05187 0.64 +0.7 691,429 + MPMX19_05187 0.72 +0.1 691,429 + MPMX19_05187 0.72 -0.2 691,429 + MPMX19_05187 0.72 +0.1 691,429 + MPMX19_05187 0.72 +1.2 691,429 + MPMX19_05187 0.72 -0.1 691,429 + MPMX19_05187 0.72 -0.5 691,429 + MPMX19_05187 0.72 -0.9 691,429 + MPMX19_05187 0.72 -0.1
Or see this region's nucleotide sequence