Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05154 and MPMX19_05155 are separated by 240 nucleotides MPMX19_05155 and MPMX19_05156 are separated by 124 nucleotides
MPMX19_05154: MPMX19_05154 - Isoleucine 2-epimerase, at 651,568 to 652,875
_05154
MPMX19_05155: MPMX19_05155 - hypothetical protein, at 653,116 to 654,681
_05155
MPMX19_05156: MPMX19_05156 - hypothetical protein, at 654,806 to 655,540
_05156
Position (kb) 653
654
655 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 652.189 kb on + strand, within MPMX19_05154 at 652.189 kb on + strand, within MPMX19_05154 at 652.189 kb on + strand, within MPMX19_05154 at 652.189 kb on + strand, within MPMX19_05154 at 652.189 kb on + strand, within MPMX19_05154 at 652.189 kb on + strand, within MPMX19_05154 at 652.189 kb on + strand, within MPMX19_05154 at 652.189 kb on + strand, within MPMX19_05154 at 652.190 kb on - strand, within MPMX19_05154 at 652.190 kb on - strand, within MPMX19_05154 at 652.190 kb on - strand, within MPMX19_05154 at 652.190 kb on - strand, within MPMX19_05154 at 652.190 kb on - strand, within MPMX19_05154 at 652.190 kb on - strand, within MPMX19_05154 at 652.190 kb on - strand, within MPMX19_05154 at 652.190 kb on - strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.252 kb on + strand, within MPMX19_05154 at 652.253 kb on - strand, within MPMX19_05154 at 652.253 kb on - strand, within MPMX19_05154 at 652.253 kb on - strand, within MPMX19_05154 at 652.253 kb on - strand, within MPMX19_05154 at 652.253 kb on - strand, within MPMX19_05154 at 652.253 kb on - strand, within MPMX19_05154 at 652.253 kb on - strand, within MPMX19_05154 at 652.498 kb on + strand, within MPMX19_05154 at 652.498 kb on + strand, within MPMX19_05154 at 652.498 kb on + strand, within MPMX19_05154 at 652.498 kb on + strand, within MPMX19_05154 at 652.498 kb on + strand, within MPMX19_05154 at 652.498 kb on + strand, within MPMX19_05154 at 652.499 kb on - strand, within MPMX19_05154 at 652.499 kb on - strand, within MPMX19_05154 at 652.499 kb on - strand, within MPMX19_05154 at 652.499 kb on - strand, within MPMX19_05154 at 652.499 kb on - strand, within MPMX19_05154 at 652.499 kb on - strand, within MPMX19_05154 at 652.499 kb on - strand, within MPMX19_05154 at 652.738 kb on + strand, within MPMX19_05154 at 652.739 kb on - strand, within MPMX19_05154 at 652.945 kb on + strand at 652.945 kb on + strand at 652.946 kb on - strand at 652.946 kb on - strand at 652.946 kb on - strand at 652.946 kb on - strand at 652.946 kb on - strand at 652.946 kb on - strand at 652.946 kb on - strand at 652.946 kb on - strand at 652.946 kb on - strand at 653.037 kb on + strand at 653.037 kb on + strand at 653.037 kb on + strand at 653.037 kb on + strand at 653.037 kb on + strand at 653.037 kb on + strand at 653.037 kb on + strand at 653.037 kb on + strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.038 kb on - strand at 653.394 kb on + strand, within MPMX19_05155 at 653.394 kb on + strand, within MPMX19_05155 at 653.395 kb on - strand, within MPMX19_05155 at 653.395 kb on - strand, within MPMX19_05155 at 653.395 kb on - strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.805 kb on + strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 653.806 kb on - strand, within MPMX19_05155 at 654.431 kb on + strand, within MPMX19_05155 at 654.431 kb on + strand, within MPMX19_05155 at 654.431 kb on + strand, within MPMX19_05155 at 654.432 kb on - strand, within MPMX19_05155 at 654.432 kb on - strand, within MPMX19_05155 at 654.432 kb on - strand, within MPMX19_05155 at 654.432 kb on - strand, within MPMX19_05155 at 654.432 kb on - strand, within MPMX19_05155 at 654.550 kb on - strand at 654.581 kb on + strand at 654.581 kb on + strand at 654.581 kb on + strand at 654.581 kb on + strand at 654.581 kb on + strand at 654.582 kb on - strand at 654.582 kb on - strand at 654.582 kb on - strand at 654.582 kb on - strand at 654.582 kb on - strand at 654.582 kb on - strand at 654.582 kb on - strand at 654.582 kb on - strand at 654.654 kb on + strand at 654.654 kb on + strand at 654.654 kb on + strand at 654.655 kb on - strand at 654.668 kb on + strand at 654.685 kb on + strand at 654.686 kb on - strand at 655.005 kb on + strand, within MPMX19_05156 at 655.005 kb on + strand, within MPMX19_05156 at 655.005 kb on + strand, within MPMX19_05156 at 655.005 kb on + strand, within MPMX19_05156 at 655.006 kb on - strand, within MPMX19_05156 at 655.006 kb on - strand, within MPMX19_05156 at 655.006 kb on - strand, within MPMX19_05156 at 655.006 kb on - strand, within MPMX19_05156 at 655.006 kb on - strand, within MPMX19_05156 at 655.017 kb on + strand, within MPMX19_05156 at 655.017 kb on + strand, within MPMX19_05156 at 655.017 kb on + strand, within MPMX19_05156 at 655.017 kb on + strand, within MPMX19_05156 at 655.017 kb on + strand, within MPMX19_05156 at 655.018 kb on - strand, within MPMX19_05156 at 655.018 kb on - strand, within MPMX19_05156 at 655.018 kb on - strand, within MPMX19_05156 at 655.018 kb on - strand, within MPMX19_05156 at 655.018 kb on - strand, within MPMX19_05156 at 655.018 kb on - strand, within MPMX19_05156 at 655.018 kb on - strand, within MPMX19_05156 at 655.146 kb on + strand, within MPMX19_05156 at 655.146 kb on + strand, within MPMX19_05156 at 655.146 kb on + strand, within MPMX19_05156 at 655.146 kb on + strand, within MPMX19_05156 at 655.146 kb on + strand, within MPMX19_05156 at 655.146 kb on + strand, within MPMX19_05156 at 655.147 kb on - strand, within MPMX19_05156 at 655.147 kb on - strand, within MPMX19_05156 at 655.147 kb on - strand, within MPMX19_05156 at 655.147 kb on - strand, within MPMX19_05156 at 655.147 kb on - strand, within MPMX19_05156 at 655.287 kb on + strand, within MPMX19_05156 at 655.299 kb on + strand, within MPMX19_05156 at 655.299 kb on + strand, within MPMX19_05156 at 655.300 kb on - strand, within MPMX19_05156 at 655.300 kb on - strand, within MPMX19_05156 at 655.300 kb on - strand, within MPMX19_05156 at 655.372 kb on + strand, within MPMX19_05156 at 655.372 kb on + strand, within MPMX19_05156 at 655.372 kb on + strand, within MPMX19_05156 at 655.372 kb on + strand, within MPMX19_05156 at 655.372 kb on + strand, within MPMX19_05156 at 655.372 kb on + strand, within MPMX19_05156 at 655.372 kb on + strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.373 kb on - strand, within MPMX19_05156 at 655.443 kb on + strand, within MPMX19_05156 at 655.444 kb on - strand, within MPMX19_05156 at 655.444 kb on - strand, within MPMX19_05156 at 655.478 kb on - strand at 655.561 kb on + strand at 655.561 kb on + strand at 655.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 652,189 + MPMX19_05154 0.47 -1.8 652,189 + MPMX19_05154 0.47 +1.8 652,189 + MPMX19_05154 0.47 +0.2 652,189 + MPMX19_05154 0.47 +2.3 652,189 + MPMX19_05154 0.47 -0.7 652,189 + MPMX19_05154 0.47 +0.3 652,189 + MPMX19_05154 0.47 +1.5 652,189 + MPMX19_05154 0.47 -0.2 652,190 - MPMX19_05154 0.48 -0.6 652,190 - MPMX19_05154 0.48 -0.4 652,190 - MPMX19_05154 0.48 -0.0 652,190 - MPMX19_05154 0.48 +0.8 652,190 - MPMX19_05154 0.48 -1.7 652,190 - MPMX19_05154 0.48 +1.3 652,190 - MPMX19_05154 0.48 -1.3 652,190 - MPMX19_05154 0.48 -0.5 652,252 + MPMX19_05154 0.52 -1.0 652,252 + MPMX19_05154 0.52 -0.1 652,252 + MPMX19_05154 0.52 +0.1 652,252 + MPMX19_05154 0.52 +0.4 652,252 + MPMX19_05154 0.52 +0.0 652,252 + MPMX19_05154 0.52 -1.9 652,252 + MPMX19_05154 0.52 -1.3 652,252 + MPMX19_05154 0.52 -0.8 652,252 + MPMX19_05154 0.52 +1.1 652,252 + MPMX19_05154 0.52 +1.5 652,252 + MPMX19_05154 0.52 -0.7 652,253 - MPMX19_05154 0.52 -0.4 652,253 - MPMX19_05154 0.52 -0.2 652,253 - MPMX19_05154 0.52 +0.8 652,253 - MPMX19_05154 0.52 +0.6 652,253 - MPMX19_05154 0.52 +0.5 652,253 - MPMX19_05154 0.52 -1.1 652,253 - MPMX19_05154 0.52 -1.1 652,498 + MPMX19_05154 0.71 -0.6 652,498 + MPMX19_05154 0.71 -2.5 652,498 + MPMX19_05154 0.71 -0.5 652,498 + MPMX19_05154 0.71 -1.9 652,498 + MPMX19_05154 0.71 +0.8 652,498 + MPMX19_05154 0.71 -0.7 652,499 - MPMX19_05154 0.71 +0.5 652,499 - MPMX19_05154 0.71 -0.2 652,499 - MPMX19_05154 0.71 +1.5 652,499 - MPMX19_05154 0.71 -0.5 652,499 - MPMX19_05154 0.71 -0.7 652,499 - MPMX19_05154 0.71 -0.1 652,499 - MPMX19_05154 0.71 +0.8 652,738 + MPMX19_05154 0.89 +0.9 652,739 - MPMX19_05154 0.90 -2.0 652,945 + -0.3 652,945 + +0.0 652,946 - -1.5 652,946 - -1.2 652,946 - -1.7 652,946 - -1.1 652,946 - -1.8 652,946 - +0.2 652,946 - +0.5 652,946 - -1.0 652,946 - +0.4 653,037 + +2.0 653,037 + -0.3 653,037 + -0.9 653,037 + +1.2 653,037 + -0.8 653,037 + -1.6 653,037 + -0.8 653,037 + -0.9 653,038 - -1.3 653,038 - +0.8 653,038 - +0.3 653,038 - -0.3 653,038 - +1.2 653,038 - +0.8 653,038 - -0.5 653,038 - +1.5 653,038 - -0.5 653,038 - -2.4 653,038 - -1.3 653,038 - +0.5 653,038 - +0.1 653,038 - +0.5 653,038 - +0.8 653,038 - -2.5 653,394 + MPMX19_05155 0.18 -1.1 653,394 + MPMX19_05155 0.18 -0.5 653,395 - MPMX19_05155 0.18 +1.0 653,395 - MPMX19_05155 0.18 -1.0 653,395 - MPMX19_05155 0.18 -0.1 653,805 + MPMX19_05155 0.44 -0.1 653,805 + MPMX19_05155 0.44 -0.5 653,805 + MPMX19_05155 0.44 -0.3 653,805 + MPMX19_05155 0.44 -0.7 653,805 + MPMX19_05155 0.44 +1.5 653,805 + MPMX19_05155 0.44 -0.5 653,805 + MPMX19_05155 0.44 -1.1 653,805 + MPMX19_05155 0.44 +0.7 653,805 + MPMX19_05155 0.44 -1.1 653,805 + MPMX19_05155 0.44 +0.1 653,805 + MPMX19_05155 0.44 -0.0 653,805 + MPMX19_05155 0.44 -0.1 653,805 + MPMX19_05155 0.44 -2.9 653,806 - MPMX19_05155 0.44 +0.3 653,806 - MPMX19_05155 0.44 -0.1 653,806 - MPMX19_05155 0.44 +0.7 653,806 - MPMX19_05155 0.44 +1.0 653,806 - MPMX19_05155 0.44 +0.7 653,806 - MPMX19_05155 0.44 +0.2 653,806 - MPMX19_05155 0.44 -0.1 653,806 - MPMX19_05155 0.44 +1.2 653,806 - MPMX19_05155 0.44 -0.1 653,806 - MPMX19_05155 0.44 +0.5 653,806 - MPMX19_05155 0.44 +0.3 654,431 + MPMX19_05155 0.84 -1.3 654,431 + MPMX19_05155 0.84 +1.7 654,431 + MPMX19_05155 0.84 -0.0 654,432 - MPMX19_05155 0.84 +0.0 654,432 - MPMX19_05155 0.84 +0.7 654,432 - MPMX19_05155 0.84 -0.1 654,432 - MPMX19_05155 0.84 +0.1 654,432 - MPMX19_05155 0.84 +0.2 654,550 - +0.7 654,581 + -0.2 654,581 + -0.5 654,581 + -0.8 654,581 + +0.8 654,581 + +0.3 654,582 - +0.2 654,582 - +0.1 654,582 - +0.1 654,582 - -0.9 654,582 - -1.9 654,582 - -0.4 654,582 - +0.3 654,582 - +1.5 654,654 + -0.8 654,654 + -1.1 654,654 + +0.8 654,655 - +0.0 654,668 + -0.4 654,685 + -0.3 654,686 - -0.5 655,005 + MPMX19_05156 0.27 -0.8 655,005 + MPMX19_05156 0.27 +1.9 655,005 + MPMX19_05156 0.27 -0.5 655,005 + MPMX19_05156 0.27 -0.1 655,006 - MPMX19_05156 0.27 +0.8 655,006 - MPMX19_05156 0.27 -0.8 655,006 - MPMX19_05156 0.27 -0.3 655,006 - MPMX19_05156 0.27 -0.6 655,006 - MPMX19_05156 0.27 -0.7 655,017 + MPMX19_05156 0.29 +0.8 655,017 + MPMX19_05156 0.29 +0.1 655,017 + MPMX19_05156 0.29 +0.8 655,017 + MPMX19_05156 0.29 +0.0 655,017 + MPMX19_05156 0.29 -0.2 655,018 - MPMX19_05156 0.29 +0.2 655,018 - MPMX19_05156 0.29 -0.7 655,018 - MPMX19_05156 0.29 +0.1 655,018 - MPMX19_05156 0.29 +0.5 655,018 - MPMX19_05156 0.29 -0.1 655,018 - MPMX19_05156 0.29 -0.2 655,018 - MPMX19_05156 0.29 -1.3 655,146 + MPMX19_05156 0.46 -0.6 655,146 + MPMX19_05156 0.46 -0.9 655,146 + MPMX19_05156 0.46 -1.3 655,146 + MPMX19_05156 0.46 -0.1 655,146 + MPMX19_05156 0.46 -0.8 655,146 + MPMX19_05156 0.46 +1.1 655,147 - MPMX19_05156 0.46 -1.1 655,147 - MPMX19_05156 0.46 +0.2 655,147 - MPMX19_05156 0.46 +0.7 655,147 - MPMX19_05156 0.46 -0.2 655,147 - MPMX19_05156 0.46 +1.1 655,287 + MPMX19_05156 0.65 -0.7 655,299 + MPMX19_05156 0.67 -1.5 655,299 + MPMX19_05156 0.67 -2.3 655,300 - MPMX19_05156 0.67 -1.3 655,300 - MPMX19_05156 0.67 +0.8 655,300 - MPMX19_05156 0.67 +0.9 655,372 + MPMX19_05156 0.77 +0.0 655,372 + MPMX19_05156 0.77 +0.1 655,372 + MPMX19_05156 0.77 +2.3 655,372 + MPMX19_05156 0.77 -1.3 655,372 + MPMX19_05156 0.77 -0.8 655,372 + MPMX19_05156 0.77 +0.1 655,372 + MPMX19_05156 0.77 -0.5 655,373 - MPMX19_05156 0.77 -1.3 655,373 - MPMX19_05156 0.77 +0.5 655,373 - MPMX19_05156 0.77 -1.5 655,373 - MPMX19_05156 0.77 -0.7 655,373 - MPMX19_05156 0.77 -1.1 655,373 - MPMX19_05156 0.77 -1.3 655,373 - MPMX19_05156 0.77 -0.3 655,373 - MPMX19_05156 0.77 -0.3 655,373 - MPMX19_05156 0.77 -1.3 655,373 - MPMX19_05156 0.77 +0.9 655,373 - MPMX19_05156 0.77 -0.6 655,443 + MPMX19_05156 0.87 -0.8 655,444 - MPMX19_05156 0.87 -0.6 655,444 - MPMX19_05156 0.87 -0.3 655,478 - +2.5 655,561 + +0.9 655,561 + -1.3 655,675 - -1.8
Or see this region's nucleotide sequence