Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04812 and MPMX19_04813 are separated by 301 nucleotides MPMX19_04813 and MPMX19_04814 are separated by 213 nucleotides
MPMX19_04812: MPMX19_04812 - hypothetical protein, at 216,230 to 216,943
_04812
MPMX19_04813: MPMX19_04813 - Phosphate-specific transport system accessory protein PhoU, at 217,245 to 218,024
_04813
MPMX19_04814: MPMX19_04814 - ATP phosphoribosyltransferase regulatory subunit, at 218,238 to 219,392
_04814
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 216.327 kb on + strand, within MPMX19_04812 at 216.327 kb on + strand, within MPMX19_04812 at 216.327 kb on + strand, within MPMX19_04812 at 216.327 kb on + strand, within MPMX19_04812 at 216.327 kb on + strand, within MPMX19_04812 at 216.327 kb on + strand, within MPMX19_04812 at 216.327 kb on + strand, within MPMX19_04812 at 216.327 kb on + strand, within MPMX19_04812 at 216.327 kb on + strand, within MPMX19_04812 at 216.328 kb on - strand, within MPMX19_04812 at 216.328 kb on - strand, within MPMX19_04812 at 216.328 kb on - strand, within MPMX19_04812 at 216.328 kb on - strand, within MPMX19_04812 at 216.328 kb on - strand, within MPMX19_04812 at 216.328 kb on - strand, within MPMX19_04812 at 216.711 kb on + strand, within MPMX19_04812 at 216.711 kb on + strand, within MPMX19_04812 at 216.711 kb on + strand, within MPMX19_04812 at 216.712 kb on - strand, within MPMX19_04812 at 216.768 kb on + strand, within MPMX19_04812 at 216.768 kb on + strand, within MPMX19_04812 at 216.768 kb on + strand, within MPMX19_04812 at 216.769 kb on - strand, within MPMX19_04812 at 216.769 kb on - strand, within MPMX19_04812 at 216.769 kb on - strand, within MPMX19_04812 at 216.769 kb on - strand, within MPMX19_04812 at 216.978 kb on + strand at 216.979 kb on - strand at 216.979 kb on - strand at 216.979 kb on - strand at 216.999 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.000 kb on + strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.002 kb on + strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.003 kb on - strand at 217.028 kb on - strand at 217.049 kb on + strand at 217.050 kb on - strand at 217.087 kb on + strand at 217.088 kb on - strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.114 kb on + strand at 217.115 kb on - strand at 217.115 kb on - strand at 217.115 kb on - strand at 217.115 kb on - strand at 217.115 kb on - strand at 217.115 kb on - strand at 217.115 kb on - strand at 217.115 kb on - strand at 217.115 kb on - strand at 217.115 kb on - strand at 217.133 kb on + strand at 217.169 kb on + strand at 217.169 kb on + strand at 217.169 kb on + strand at 217.169 kb on + strand at 217.169 kb on + strand at 217.169 kb on + strand at 217.170 kb on - strand at 217.170 kb on - strand at 217.170 kb on - strand at 217.170 kb on - strand at 217.170 kb on - strand at 217.170 kb on - strand at 217.171 kb on + strand at 217.171 kb on + strand at 217.171 kb on + strand at 217.171 kb on + strand at 217.171 kb on + strand at 217.171 kb on + strand at 217.171 kb on + strand at 217.171 kb on + strand at 217.172 kb on - strand at 217.172 kb on - strand at 217.172 kb on - strand at 217.172 kb on - strand at 217.172 kb on - strand at 217.172 kb on - strand at 217.172 kb on - strand at 217.172 kb on - strand at 217.172 kb on - strand at 217.251 kb on - strand at 217.422 kb on + strand, within MPMX19_04813 at 217.422 kb on + strand, within MPMX19_04813 at 217.422 kb on + strand, within MPMX19_04813 at 217.422 kb on + strand, within MPMX19_04813 at 217.545 kb on + strand, within MPMX19_04813 at 217.545 kb on + strand, within MPMX19_04813 at 217.545 kb on + strand, within MPMX19_04813 at 217.546 kb on - strand, within MPMX19_04813 at 217.546 kb on - strand, within MPMX19_04813 at 217.546 kb on - strand, within MPMX19_04813 at 217.546 kb on - strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.668 kb on + strand, within MPMX19_04813 at 217.669 kb on - strand, within MPMX19_04813 at 217.669 kb on - strand, within MPMX19_04813 at 217.669 kb on - strand, within MPMX19_04813 at 217.669 kb on - strand, within MPMX19_04813 at 217.669 kb on - strand, within MPMX19_04813 at 217.669 kb on - strand, within MPMX19_04813 at 217.669 kb on - strand, within MPMX19_04813 at 217.734 kb on + strand, within MPMX19_04813 at 217.734 kb on + strand, within MPMX19_04813 at 217.734 kb on + strand, within MPMX19_04813 at 217.734 kb on + strand, within MPMX19_04813 at 217.734 kb on + strand, within MPMX19_04813 at 217.734 kb on + strand, within MPMX19_04813 at 217.734 kb on + strand, within MPMX19_04813 at 217.734 kb on + strand, within MPMX19_04813 at 217.735 kb on - strand, within MPMX19_04813 at 217.735 kb on - strand, within MPMX19_04813 at 217.735 kb on - strand, within MPMX19_04813 at 217.735 kb on - strand, within MPMX19_04813 at 217.735 kb on - strand, within MPMX19_04813 at 217.735 kb on - strand, within MPMX19_04813 at 217.735 kb on - strand, within MPMX19_04813 at 217.735 kb on - strand, within MPMX19_04813 at 217.735 kb on - strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.764 kb on + strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.765 kb on - strand, within MPMX19_04813 at 217.988 kb on + strand at 217.988 kb on + strand at 218.116 kb on + strand at 218.116 kb on + strand at 218.116 kb on + strand at 218.116 kb on + strand at 218.116 kb on + strand at 218.116 kb on + strand at 218.166 kb on + strand at 218.166 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 216,327 + MPMX19_04812 0.14 -1.2 216,327 + MPMX19_04812 0.14 +0.1 216,327 + MPMX19_04812 0.14 -1.4 216,327 + MPMX19_04812 0.14 -0.8 216,327 + MPMX19_04812 0.14 -1.1 216,327 + MPMX19_04812 0.14 -0.4 216,327 + MPMX19_04812 0.14 -2.7 216,327 + MPMX19_04812 0.14 -1.2 216,327 + MPMX19_04812 0.14 -1.3 216,328 - MPMX19_04812 0.14 +0.9 216,328 - MPMX19_04812 0.14 -0.1 216,328 - MPMX19_04812 0.14 -1.4 216,328 - MPMX19_04812 0.14 -1.8 216,328 - MPMX19_04812 0.14 -2.4 216,328 - MPMX19_04812 0.14 -0.7 216,711 + MPMX19_04812 0.67 -0.4 216,711 + MPMX19_04812 0.67 -0.9 216,711 + MPMX19_04812 0.67 -0.9 216,712 - MPMX19_04812 0.68 -0.8 216,768 + MPMX19_04812 0.75 -0.9 216,768 + MPMX19_04812 0.75 +0.7 216,768 + MPMX19_04812 0.75 -1.4 216,769 - MPMX19_04812 0.75 -0.1 216,769 - MPMX19_04812 0.75 +0.7 216,769 - MPMX19_04812 0.75 -0.4 216,769 - MPMX19_04812 0.75 +0.1 216,978 + -0.8 216,979 - -0.6 216,979 - -0.3 216,979 - -0.0 216,999 + -2.0 217,000 + -0.0 217,000 + +0.5 217,000 + +0.1 217,000 + -0.3 217,000 + +0.1 217,000 + -1.3 217,000 + -0.4 217,000 + +0.4 217,000 + -0.0 217,000 + -0.0 217,000 + +0.5 217,000 + +0.4 217,000 + -0.4 217,000 + -1.4 217,000 + -0.2 217,000 + -0.3 217,000 + -1.0 217,001 - -1.6 217,001 - +2.2 217,001 - -0.9 217,001 - +0.7 217,001 - -0.1 217,001 - -0.7 217,001 - +0.5 217,001 - -0.4 217,001 - -0.2 217,001 - -1.8 217,001 - +1.9 217,001 - +1.7 217,001 - +0.3 217,002 + -0.4 217,002 + +0.6 217,002 + -2.7 217,002 + +0.0 217,002 + +0.8 217,002 + -1.3 217,002 + +0.6 217,002 + -0.7 217,002 + -1.8 217,002 + -0.0 217,002 + -0.3 217,002 + -0.6 217,002 + +0.2 217,002 + -1.9 217,002 + -0.3 217,002 + -1.5 217,002 + +0.1 217,002 + -0.8 217,002 + -0.0 217,002 + -0.1 217,002 + -0.3 217,002 + -0.1 217,003 - +0.7 217,003 - -0.3 217,003 - -0.8 217,003 - +0.7 217,003 - -2.0 217,003 - +0.7 217,003 - +0.1 217,003 - +0.8 217,003 - -2.4 217,003 - -1.0 217,003 - -0.1 217,003 - +0.0 217,003 - -0.8 217,003 - +0.2 217,003 - -0.6 217,003 - -1.4 217,003 - -1.4 217,003 - -1.4 217,003 - +0.7 217,003 - -1.2 217,003 - +0.7 217,003 - -0.4 217,003 - +0.7 217,003 - +0.7 217,003 - -0.4 217,003 - -0.5 217,003 - -0.6 217,003 - -0.8 217,003 - -0.9 217,003 - -1.0 217,028 - -0.1 217,049 + +1.2 217,050 - -0.0 217,087 + -0.0 217,088 - -1.4 217,114 + -0.1 217,114 + +0.3 217,114 + -0.6 217,114 + -1.4 217,114 + +0.6 217,114 + +0.6 217,114 + -0.6 217,114 + -0.4 217,114 + +0.9 217,114 + +0.2 217,114 + +2.3 217,114 + -0.7 217,114 + +0.1 217,115 - +0.2 217,115 - +0.8 217,115 - -0.4 217,115 - +0.2 217,115 - -2.0 217,115 - -1.0 217,115 - -1.6 217,115 - +0.2 217,115 - +0.6 217,115 - -0.4 217,133 + -0.3 217,169 + -0.9 217,169 + -0.5 217,169 + +0.1 217,169 + -0.4 217,169 + -1.0 217,169 + -1.9 217,170 - -2.1 217,170 - +0.0 217,170 - -1.3 217,170 - +1.6 217,170 - -1.4 217,170 - -0.7 217,171 + -0.2 217,171 + -1.1 217,171 + -0.3 217,171 + +0.7 217,171 + -0.4 217,171 + -0.0 217,171 + +1.8 217,171 + -1.6 217,172 - -0.3 217,172 - -1.6 217,172 - -0.4 217,172 - -0.6 217,172 - -0.3 217,172 - +0.6 217,172 - -1.8 217,172 - -1.3 217,172 - -2.0 217,251 - -1.3 217,422 + MPMX19_04813 0.23 -0.0 217,422 + MPMX19_04813 0.23 -1.0 217,422 + MPMX19_04813 0.23 +0.6 217,422 + MPMX19_04813 0.23 -1.1 217,545 + MPMX19_04813 0.38 -0.3 217,545 + MPMX19_04813 0.38 -1.3 217,545 + MPMX19_04813 0.38 -1.3 217,546 - MPMX19_04813 0.39 -0.9 217,546 - MPMX19_04813 0.39 -0.8 217,546 - MPMX19_04813 0.39 -1.4 217,546 - MPMX19_04813 0.39 -2.0 217,668 + MPMX19_04813 0.54 -1.7 217,668 + MPMX19_04813 0.54 +0.8 217,668 + MPMX19_04813 0.54 +0.2 217,668 + MPMX19_04813 0.54 -1.4 217,668 + MPMX19_04813 0.54 -0.5 217,668 + MPMX19_04813 0.54 -0.4 217,668 + MPMX19_04813 0.54 -0.2 217,668 + MPMX19_04813 0.54 -0.4 217,668 + MPMX19_04813 0.54 -1.1 217,668 + MPMX19_04813 0.54 -1.9 217,669 - MPMX19_04813 0.54 -1.3 217,669 - MPMX19_04813 0.54 -0.3 217,669 - MPMX19_04813 0.54 -0.0 217,669 - MPMX19_04813 0.54 -1.8 217,669 - MPMX19_04813 0.54 -2.8 217,669 - MPMX19_04813 0.54 -1.4 217,669 - MPMX19_04813 0.54 -1.3 217,734 + MPMX19_04813 0.63 +0.5 217,734 + MPMX19_04813 0.63 -2.4 217,734 + MPMX19_04813 0.63 -2.6 217,734 + MPMX19_04813 0.63 -1.1 217,734 + MPMX19_04813 0.63 -0.4 217,734 + MPMX19_04813 0.63 +0.4 217,734 + MPMX19_04813 0.63 +0.6 217,734 + MPMX19_04813 0.63 -0.8 217,735 - MPMX19_04813 0.63 -0.0 217,735 - MPMX19_04813 0.63 -0.4 217,735 - MPMX19_04813 0.63 -0.3 217,735 - MPMX19_04813 0.63 +0.7 217,735 - MPMX19_04813 0.63 -0.2 217,735 - MPMX19_04813 0.63 -1.1 217,735 - MPMX19_04813 0.63 +0.3 217,735 - MPMX19_04813 0.63 -0.0 217,735 - MPMX19_04813 0.63 -0.6 217,764 + MPMX19_04813 0.67 -0.9 217,764 + MPMX19_04813 0.67 -0.8 217,764 + MPMX19_04813 0.67 +1.1 217,764 + MPMX19_04813 0.67 +0.2 217,764 + MPMX19_04813 0.67 +3.1 217,764 + MPMX19_04813 0.67 -1.4 217,764 + MPMX19_04813 0.67 -0.4 217,764 + MPMX19_04813 0.67 -0.9 217,764 + MPMX19_04813 0.67 -1.8 217,764 + MPMX19_04813 0.67 -1.9 217,764 + MPMX19_04813 0.67 -1.6 217,764 + MPMX19_04813 0.67 -0.6 217,764 + MPMX19_04813 0.67 -0.2 217,764 + MPMX19_04813 0.67 -1.4 217,764 + MPMX19_04813 0.67 -0.4 217,764 + MPMX19_04813 0.67 -2.0 217,764 + MPMX19_04813 0.67 +0.3 217,764 + MPMX19_04813 0.67 -0.1 217,764 + MPMX19_04813 0.67 -1.0 217,764 + MPMX19_04813 0.67 -0.0 217,765 - MPMX19_04813 0.67 -0.7 217,765 - MPMX19_04813 0.67 -0.9 217,765 - MPMX19_04813 0.67 -0.5 217,765 - MPMX19_04813 0.67 -0.4 217,765 - MPMX19_04813 0.67 -0.9 217,765 - MPMX19_04813 0.67 +1.6 217,765 - MPMX19_04813 0.67 -0.1 217,765 - MPMX19_04813 0.67 -0.9 217,765 - MPMX19_04813 0.67 -0.3 217,765 - MPMX19_04813 0.67 -0.7 217,765 - MPMX19_04813 0.67 +0.4 217,765 - MPMX19_04813 0.67 -0.0 217,765 - MPMX19_04813 0.67 -1.2 217,765 - MPMX19_04813 0.67 +0.1 217,765 - MPMX19_04813 0.67 -0.8 217,765 - MPMX19_04813 0.67 -0.8 217,765 - MPMX19_04813 0.67 -0.4 217,765 - MPMX19_04813 0.67 -0.1 217,765 - MPMX19_04813 0.67 +0.3 217,765 - MPMX19_04813 0.67 -0.9 217,988 + -0.0 217,988 + +0.1 218,116 + +0.4 218,116 + +1.6 218,116 + -2.4 218,116 + -0.2 218,116 + -1.2 218,116 + -0.7 218,166 + -0.4 218,166 + +0.2
Or see this region's nucleotide sequence