Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04691 and MPMX19_04692 are separated by 23 nucleotides MPMX19_04692 and MPMX19_04693 overlap by 4 nucleotides MPMX19_04693 and MPMX19_04694 overlap by 4 nucleotides MPMX19_04694 and MPMX19_04695 overlap by 4 nucleotides
MPMX19_04691: MPMX19_04691 - hypothetical protein, at 77,297 to 78,025
_04691
MPMX19_04692: MPMX19_04692 - hypothetical protein, at 78,049 to 78,468
_04692
MPMX19_04693: MPMX19_04693 - hypothetical protein, at 78,465 to 78,746
_04693
MPMX19_04694: MPMX19_04694 - Na(+)/H(+) antiporter subunit E1, at 78,743 to 79,243
_04694
MPMX19_04695: MPMX19_04695 - Na(+)/H(+) antiporter subunit D, at 79,240 to 80,868
_04695
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.780 kb on + strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.781 kb on - strand, within MPMX19_04691 at 77.806 kb on + strand, within MPMX19_04691 at 77.828 kb on + strand, within MPMX19_04691 at 77.828 kb on + strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 77.829 kb on - strand, within MPMX19_04691 at 78.042 kb on + strand at 78.042 kb on + strand at 78.168 kb on - strand, within MPMX19_04692 at 78.337 kb on + strand, within MPMX19_04692 at 78.337 kb on + strand, within MPMX19_04692 at 78.338 kb on - strand, within MPMX19_04692 at 78.338 kb on - strand, within MPMX19_04692 at 78.338 kb on - strand, within MPMX19_04692 at 78.347 kb on + strand, within MPMX19_04692 at 78.347 kb on + strand, within MPMX19_04692 at 78.347 kb on + strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.348 kb on - strand, within MPMX19_04692 at 78.556 kb on + strand, within MPMX19_04693 at 78.556 kb on + strand, within MPMX19_04693 at 78.556 kb on + strand, within MPMX19_04693 at 78.557 kb on - strand, within MPMX19_04693 at 78.557 kb on - strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.613 kb on + strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.614 kb on - strand, within MPMX19_04693 at 78.774 kb on + strand at 78.775 kb on - strand at 78.775 kb on - strand at 78.858 kb on + strand, within MPMX19_04694 at 78.858 kb on + strand, within MPMX19_04694 at 78.858 kb on + strand, within MPMX19_04694 at 78.858 kb on + strand, within MPMX19_04694 at 78.859 kb on - strand, within MPMX19_04694 at 78.859 kb on - strand, within MPMX19_04694 at 78.919 kb on - strand, within MPMX19_04694 at 79.213 kb on - strand at 79.300 kb on - strand at 79.300 kb on - strand at 79.300 kb on - strand at 79.300 kb on - strand at 79.300 kb on - strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.301 kb on + strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.302 kb on - strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.343 kb on + strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.344 kb on - strand at 79.853 kb on + strand, within MPMX19_04695 at 79.853 kb on + strand, within MPMX19_04695 at 79.853 kb on + strand, within MPMX19_04695 at 79.853 kb on + strand, within MPMX19_04695 at 79.854 kb on - strand, within MPMX19_04695 at 79.854 kb on - strand, within MPMX19_04695 at 79.854 kb on - strand, within MPMX19_04695 at 79.854 kb on - strand, within MPMX19_04695 at 79.969 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.090 kb on + strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.091 kb on - strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.150 kb on + strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695 at 80.151 kb on - strand, within MPMX19_04695
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 77,780 + MPMX19_04691 0.66 +0.1 77,780 + MPMX19_04691 0.66 +0.4 77,780 + MPMX19_04691 0.66 +0.1 77,780 + MPMX19_04691 0.66 -0.8 77,780 + MPMX19_04691 0.66 -1.2 77,780 + MPMX19_04691 0.66 -1.8 77,780 + MPMX19_04691 0.66 -1.1 77,780 + MPMX19_04691 0.66 -1.3 77,780 + MPMX19_04691 0.66 -2.2 77,781 - MPMX19_04691 0.66 -0.5 77,781 - MPMX19_04691 0.66 -3.0 77,781 - MPMX19_04691 0.66 +0.1 77,781 - MPMX19_04691 0.66 -1.1 77,781 - MPMX19_04691 0.66 -0.5 77,781 - MPMX19_04691 0.66 +0.1 77,781 - MPMX19_04691 0.66 +0.5 77,781 - MPMX19_04691 0.66 +1.2 77,806 + MPMX19_04691 0.70 -0.7 77,828 + MPMX19_04691 0.73 -1.9 77,828 + MPMX19_04691 0.73 -1.2 77,829 - MPMX19_04691 0.73 +0.1 77,829 - MPMX19_04691 0.73 +0.1 77,829 - MPMX19_04691 0.73 -0.1 77,829 - MPMX19_04691 0.73 -0.1 77,829 - MPMX19_04691 0.73 -0.7 77,829 - MPMX19_04691 0.73 -0.4 77,829 - MPMX19_04691 0.73 +0.3 77,829 - MPMX19_04691 0.73 -1.1 78,042 + -1.2 78,042 + -0.1 78,168 - MPMX19_04692 0.28 +0.7 78,337 + MPMX19_04692 0.69 +0.3 78,337 + MPMX19_04692 0.69 -0.7 78,338 - MPMX19_04692 0.69 -1.6 78,338 - MPMX19_04692 0.69 -1.0 78,338 - MPMX19_04692 0.69 +0.4 78,347 + MPMX19_04692 0.71 +1.2 78,347 + MPMX19_04692 0.71 -0.8 78,347 + MPMX19_04692 0.71 +1.7 78,348 - MPMX19_04692 0.71 +0.5 78,348 - MPMX19_04692 0.71 -1.0 78,348 - MPMX19_04692 0.71 -1.6 78,348 - MPMX19_04692 0.71 -0.5 78,348 - MPMX19_04692 0.71 -0.1 78,348 - MPMX19_04692 0.71 -0.5 78,556 + MPMX19_04693 0.32 +0.0 78,556 + MPMX19_04693 0.32 -0.7 78,556 + MPMX19_04693 0.32 -0.6 78,557 - MPMX19_04693 0.33 +0.0 78,557 - MPMX19_04693 0.33 -0.1 78,613 + MPMX19_04693 0.52 -0.5 78,613 + MPMX19_04693 0.52 +0.3 78,613 + MPMX19_04693 0.52 -1.8 78,613 + MPMX19_04693 0.52 -0.5 78,613 + MPMX19_04693 0.52 -1.0 78,613 + MPMX19_04693 0.52 -0.4 78,614 - MPMX19_04693 0.53 +0.2 78,614 - MPMX19_04693 0.53 -2.5 78,614 - MPMX19_04693 0.53 -0.2 78,614 - MPMX19_04693 0.53 +1.1 78,614 - MPMX19_04693 0.53 -1.5 78,614 - MPMX19_04693 0.53 +0.7 78,614 - MPMX19_04693 0.53 -0.6 78,774 + +0.9 78,775 - -0.2 78,775 - -0.4 78,858 + MPMX19_04694 0.23 +0.4 78,858 + MPMX19_04694 0.23 -1.9 78,858 + MPMX19_04694 0.23 -0.5 78,858 + MPMX19_04694 0.23 -1.6 78,859 - MPMX19_04694 0.23 -0.6 78,859 - MPMX19_04694 0.23 -0.8 78,919 - MPMX19_04694 0.35 -1.6 79,213 - -1.3 79,300 - -0.7 79,300 - -1.6 79,300 - -0.7 79,300 - +0.4 79,300 - -0.1 79,301 + -0.5 79,301 + -1.2 79,301 + -0.2 79,301 + -0.8 79,301 + +0.4 79,301 + +0.8 79,301 + -0.8 79,301 + +0.1 79,301 + -1.5 79,301 + +0.0 79,301 + +0.9 79,301 + -0.1 79,301 + -0.5 79,302 - -0.5 79,302 - +0.1 79,302 - -1.2 79,302 - -0.9 79,302 - +1.0 79,302 - +0.1 79,302 - -0.6 79,302 - -0.6 79,302 - +0.7 79,302 - -1.2 79,302 - -0.6 79,302 - +0.8 79,343 + -1.0 79,343 + -1.1 79,343 + +0.5 79,343 + -1.0 79,343 + -2.2 79,343 + -1.6 79,343 + -0.1 79,343 + +0.1 79,343 + +0.7 79,343 + -0.9 79,343 + -1.1 79,343 + +0.5 79,344 - +1.1 79,344 - -0.5 79,344 - +0.1 79,344 - +0.2 79,344 - -1.5 79,344 - -0.5 79,853 + MPMX19_04695 0.38 -0.1 79,853 + MPMX19_04695 0.38 +0.5 79,853 + MPMX19_04695 0.38 +0.0 79,853 + MPMX19_04695 0.38 -1.1 79,854 - MPMX19_04695 0.38 +0.3 79,854 - MPMX19_04695 0.38 +0.2 79,854 - MPMX19_04695 0.38 +0.1 79,854 - MPMX19_04695 0.38 -0.5 79,969 + MPMX19_04695 0.45 +0.0 80,090 + MPMX19_04695 0.52 -0.8 80,090 + MPMX19_04695 0.52 +0.9 80,090 + MPMX19_04695 0.52 -0.5 80,090 + MPMX19_04695 0.52 +0.2 80,090 + MPMX19_04695 0.52 -0.5 80,090 + MPMX19_04695 0.52 -0.2 80,090 + MPMX19_04695 0.52 -0.4 80,090 + MPMX19_04695 0.52 +2.5 80,090 + MPMX19_04695 0.52 -0.2 80,090 + MPMX19_04695 0.52 -0.2 80,090 + MPMX19_04695 0.52 -1.6 80,090 + MPMX19_04695 0.52 -0.4 80,090 + MPMX19_04695 0.52 -0.6 80,090 + MPMX19_04695 0.52 +0.5 80,090 + MPMX19_04695 0.52 -0.9 80,090 + MPMX19_04695 0.52 +0.7 80,090 + MPMX19_04695 0.52 -1.6 80,090 + MPMX19_04695 0.52 -1.1 80,090 + MPMX19_04695 0.52 -0.6 80,090 + MPMX19_04695 0.52 -0.5 80,090 + MPMX19_04695 0.52 -0.2 80,091 - MPMX19_04695 0.52 -0.6 80,091 - MPMX19_04695 0.52 +0.9 80,091 - MPMX19_04695 0.52 +0.5 80,091 - MPMX19_04695 0.52 +0.0 80,091 - MPMX19_04695 0.52 +0.3 80,091 - MPMX19_04695 0.52 -0.6 80,091 - MPMX19_04695 0.52 -1.0 80,091 - MPMX19_04695 0.52 +0.2 80,091 - MPMX19_04695 0.52 -0.4 80,091 - MPMX19_04695 0.52 +0.4 80,091 - MPMX19_04695 0.52 -0.7 80,091 - MPMX19_04695 0.52 +0.5 80,091 - MPMX19_04695 0.52 -0.2 80,091 - MPMX19_04695 0.52 +0.6 80,091 - MPMX19_04695 0.52 +0.1 80,091 - MPMX19_04695 0.52 -0.9 80,150 + MPMX19_04695 0.56 -0.2 80,150 + MPMX19_04695 0.56 -1.3 80,150 + MPMX19_04695 0.56 -0.6 80,150 + MPMX19_04695 0.56 -0.5 80,150 + MPMX19_04695 0.56 -0.5 80,150 + MPMX19_04695 0.56 -0.6 80,150 + MPMX19_04695 0.56 +0.4 80,150 + MPMX19_04695 0.56 -0.7 80,150 + MPMX19_04695 0.56 -0.2 80,150 + MPMX19_04695 0.56 -0.7 80,150 + MPMX19_04695 0.56 -1.0 80,151 - MPMX19_04695 0.56 -1.1 80,151 - MPMX19_04695 0.56 -0.2 80,151 - MPMX19_04695 0.56 +0.8 80,151 - MPMX19_04695 0.56 -1.0 80,151 - MPMX19_04695 0.56 +0.0 80,151 - MPMX19_04695 0.56 -0.1 80,151 - MPMX19_04695 0.56 +0.4 80,151 - MPMX19_04695 0.56 -0.5 80,151 - MPMX19_04695 0.56 -0.3
Or see this region's nucleotide sequence