Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04211

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04209 and MPMX19_04210 are separated by 75 nucleotidesMPMX19_04210 and MPMX19_04211 are separated by 233 nucleotidesMPMX19_04211 and MPMX19_04212 overlap by 4 nucleotides MPMX19_04209: MPMX19_04209 - Lipopolysaccharide assembly protein B, at 542,859 to 548,912 _04209 MPMX19_04210: MPMX19_04210 - hypothetical protein, at 548,988 to 549,167 _04210 MPMX19_04211: MPMX19_04211 - hypothetical protein, at 549,401 to 550,084 _04211 MPMX19_04212: MPMX19_04212 - Photosystem I assembly protein Ycf3, at 550,081 to 553,632 _04212 Position (kb) 549 550 551Strain fitness (log2 ratio) -2 -1 0 1 2 3at 548.466 kb on + strandat 548.466 kb on + strandat 548.466 kb on + strandat 548.466 kb on + strandat 548.467 kb on - strandat 548.532 kb on + strandat 548.532 kb on + strandat 548.532 kb on + strandat 548.532 kb on + strandat 548.533 kb on - strandat 548.533 kb on - strandat 548.937 kb on + strandat 548.944 kb on + strandat 548.944 kb on + strandat 548.944 kb on + strandat 548.945 kb on - strandat 548.945 kb on - strandat 549.063 kb on + strand, within MPMX19_04210at 549.063 kb on + strand, within MPMX19_04210at 549.063 kb on + strand, within MPMX19_04210at 549.063 kb on + strand, within MPMX19_04210at 549.064 kb on - strand, within MPMX19_04210at 549.064 kb on - strand, within MPMX19_04210at 549.259 kb on + strandat 549.259 kb on + strandat 549.260 kb on - strandat 549.272 kb on + strandat 549.273 kb on - strandat 549.273 kb on - strandat 549.316 kb on + strandat 549.316 kb on + strandat 549.317 kb on - strandat 549.317 kb on - strandat 549.317 kb on - strandat 549.317 kb on - strandat 549.402 kb on + strandat 549.402 kb on + strandat 549.467 kb on - strandat 549.498 kb on + strand, within MPMX19_04211at 549.499 kb on - strand, within MPMX19_04211at 549.499 kb on - strand, within MPMX19_04211at 549.528 kb on - strand, within MPMX19_04211at 549.528 kb on - strand, within MPMX19_04211at 549.528 kb on - strand, within MPMX19_04211at 549.699 kb on + strand, within MPMX19_04211at 549.699 kb on + strand, within MPMX19_04211at 549.699 kb on + strand, within MPMX19_04211at 549.699 kb on + strand, within MPMX19_04211at 549.699 kb on + strand, within MPMX19_04211at 549.699 kb on + strand, within MPMX19_04211at 549.699 kb on + strand, within MPMX19_04211at 549.699 kb on + strand, within MPMX19_04211at 549.699 kb on + strand, within MPMX19_04211at 549.700 kb on - strand, within MPMX19_04211at 549.700 kb on - strand, within MPMX19_04211at 549.700 kb on - strand, within MPMX19_04211at 549.700 kb on - strand, within MPMX19_04211at 549.700 kb on - strand, within MPMX19_04211at 550.005 kb on + strand, within MPMX19_04211at 550.006 kb on - strand, within MPMX19_04211at 550.069 kb on + strandat 550.069 kb on + strandat 550.069 kb on + strandat 550.069 kb on + strandat 550.069 kb on + strandat 550.069 kb on + strandat 550.069 kb on + strandat 550.070 kb on - strandat 550.070 kb on - strandat 550.070 kb on - strandat 550.070 kb on - strandat 550.070 kb on - strandat 550.070 kb on - strandat 550.070 kb on - strandat 550.418 kb on + strandat 550.418 kb on + strandat 550.418 kb on + strandat 550.419 kb on - strandat 550.419 kb on - strandat 550.419 kb on - strandat 550.482 kb on + strand, within MPMX19_04212at 550.482 kb on + strand, within MPMX19_04212at 550.483 kb on - strand, within MPMX19_04212at 550.484 kb on + strand, within MPMX19_04212at 550.484 kb on + strand, within MPMX19_04212at 550.484 kb on + strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.485 kb on - strand, within MPMX19_04212at 550.604 kb on + strand, within MPMX19_04212at 550.604 kb on + strand, within MPMX19_04212at 550.604 kb on + strand, within MPMX19_04212at 550.604 kb on + strand, within MPMX19_04212at 550.604 kb on + strand, within MPMX19_04212at 550.604 kb on + strand, within MPMX19_04212at 550.604 kb on + strand, within MPMX19_04212at 550.604 kb on + strand, within MPMX19_04212at 550.604 kb on + strand, within MPMX19_04212at 550.605 kb on - strand, within MPMX19_04212at 550.605 kb on - strand, within MPMX19_04212at 550.605 kb on - strand, within MPMX19_04212at 550.605 kb on - strand, within MPMX19_04212at 550.605 kb on - strand, within MPMX19_04212at 550.605 kb on - strand, within MPMX19_04212at 550.973 kb on + strand, within MPMX19_04212

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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548,466 + -1.4
548,466 + +0.0
548,466 + +1.0
548,466 + -1.5
548,467 - -0.3
548,532 + -0.9
548,532 + -0.3
548,532 + +0.6
548,532 + -0.3
548,533 - -0.0
548,533 - +0.6
548,937 + -1.4
548,944 + +0.4
548,944 + -0.8
548,944 + -1.8
548,945 - -2.1
548,945 - +0.7
549,063 + MPMX19_04210 0.42 +1.2
549,063 + MPMX19_04210 0.42 +0.1
549,063 + MPMX19_04210 0.42 -1.4
549,063 + MPMX19_04210 0.42 -0.8
549,064 - MPMX19_04210 0.42 -0.7
549,064 - MPMX19_04210 0.42 -0.9
549,259 + +0.6
549,259 + -2.1
549,260 - -1.4
549,272 + -0.7
549,273 - -0.0
549,273 - -1.8
549,316 + -0.9
549,316 + +0.2
549,317 - -2.3
549,317 - +0.2
549,317 - -1.0
549,317 - -1.6
549,402 + +0.2
549,402 + -1.0
549,467 - +0.2
549,498 + MPMX19_04211 0.14 -1.4
549,499 - MPMX19_04211 0.14 +0.8
549,499 - MPMX19_04211 0.14 +0.0
549,528 - MPMX19_04211 0.19 +1.4
549,528 - MPMX19_04211 0.19 +0.6
549,528 - MPMX19_04211 0.19 -1.8
549,699 + MPMX19_04211 0.44 -0.6
549,699 + MPMX19_04211 0.44 +1.0
549,699 + MPMX19_04211 0.44 -1.3
549,699 + MPMX19_04211 0.44 +0.7
549,699 + MPMX19_04211 0.44 -0.3
549,699 + MPMX19_04211 0.44 +1.2
549,699 + MPMX19_04211 0.44 +0.1
549,699 + MPMX19_04211 0.44 +0.6
549,699 + MPMX19_04211 0.44 +0.7
549,700 - MPMX19_04211 0.44 -2.1
549,700 - MPMX19_04211 0.44 -1.8
549,700 - MPMX19_04211 0.44 +0.1
549,700 - MPMX19_04211 0.44 -0.2
549,700 - MPMX19_04211 0.44 +0.4
550,005 + MPMX19_04211 0.88 -1.0
550,006 - MPMX19_04211 0.88 -0.3
550,069 + +0.2
550,069 + -0.6
550,069 + +0.0
550,069 + -0.4
550,069 + +1.6
550,069 + -0.4
550,069 + +0.1
550,070 - -0.8
550,070 - +1.2
550,070 - -0.8
550,070 - -0.9
550,070 - -0.6
550,070 - +0.2
550,070 - -1.0
550,418 + -0.0
550,418 + -0.4
550,418 + +0.3
550,419 - -0.7
550,419 - +1.0
550,419 - -1.0
550,482 + MPMX19_04212 0.11 +0.5
550,482 + MPMX19_04212 0.11 -0.7
550,483 - MPMX19_04212 0.11 +0.6
550,484 + MPMX19_04212 0.11 +0.6
550,484 + MPMX19_04212 0.11 -1.8
550,484 + MPMX19_04212 0.11 -0.7
550,485 - MPMX19_04212 0.11 -2.3
550,485 - MPMX19_04212 0.11 +0.4
550,485 - MPMX19_04212 0.11 -0.1
550,485 - MPMX19_04212 0.11 -1.5
550,485 - MPMX19_04212 0.11 -0.4
550,485 - MPMX19_04212 0.11 +3.6
550,485 - MPMX19_04212 0.11 -0.8
550,485 - MPMX19_04212 0.11 -0.3
550,485 - MPMX19_04212 0.11 -1.9
550,485 - MPMX19_04212 0.11 -0.1
550,604 + MPMX19_04212 0.15 -0.8
550,604 + MPMX19_04212 0.15 -0.8
550,604 + MPMX19_04212 0.15 +2.1
550,604 + MPMX19_04212 0.15 +0.4
550,604 + MPMX19_04212 0.15 -0.1
550,604 + MPMX19_04212 0.15 -1.0
550,604 + MPMX19_04212 0.15 -0.9
550,604 + MPMX19_04212 0.15 -1.7
550,604 + MPMX19_04212 0.15 +0.6
550,605 - MPMX19_04212 0.15 +0.7
550,605 - MPMX19_04212 0.15 +1.6
550,605 - MPMX19_04212 0.15 -1.7
550,605 - MPMX19_04212 0.15 +0.3
550,605 - MPMX19_04212 0.15 -0.3
550,605 - MPMX19_04212 0.15 +0.1
550,973 + MPMX19_04212 0.25 -0.0

Or see this region's nucleotide sequence