Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04107 and MPMX19_04108 overlap by 4 nucleotides MPMX19_04108 and MPMX19_04109 are separated by 10 nucleotides MPMX19_04109 and MPMX19_04110 are separated by 72 nucleotides MPMX19_04110 and MPMX19_04111 are separated by 271 nucleotides
MPMX19_04107: MPMX19_04107 - Sensor histidine kinase RcsC, at 412,256 to 415,762
_04107
MPMX19_04108: MPMX19_04108 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 415,759 to 416,670
_04108
MPMX19_04109: MPMX19_04109 - hypothetical protein, at 416,681 to 417,502
_04109
MPMX19_04110: MPMX19_04110 - Bifunctional protein PaaZ, at 417,575 to 418,042
_04110
MPMX19_04111: MPMX19_04111 - hypothetical protein, at 418,314 to 418,877
_04111
Position (kb) 416
417
418 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.068 kb on + strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.069 kb on - strand, within MPMX19_04108 at 416.143 kb on + strand, within MPMX19_04108 at 416.143 kb on + strand, within MPMX19_04108 at 416.144 kb on - strand, within MPMX19_04108 at 416.144 kb on - strand, within MPMX19_04108 at 416.144 kb on - strand, within MPMX19_04108 at 416.144 kb on - strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.386 kb on + strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.387 kb on - strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.413 kb on + strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.414 kb on - strand, within MPMX19_04108 at 416.568 kb on + strand, within MPMX19_04108 at 416.568 kb on + strand, within MPMX19_04108 at 416.568 kb on + strand, within MPMX19_04108 at 416.742 kb on + strand at 416.742 kb on + strand at 416.742 kb on + strand at 416.743 kb on - strand at 416.743 kb on - strand at 416.799 kb on + strand, within MPMX19_04109 at 416.800 kb on - strand, within MPMX19_04109 at 416.817 kb on + strand, within MPMX19_04109 at 416.817 kb on + strand, within MPMX19_04109 at 416.817 kb on + strand, within MPMX19_04109 at 416.817 kb on + strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.818 kb on - strand, within MPMX19_04109 at 416.896 kb on - strand, within MPMX19_04109 at 417.130 kb on - strand, within MPMX19_04109 at 417.130 kb on - strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.237 kb on + strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.238 kb on - strand, within MPMX19_04109 at 417.361 kb on + strand, within MPMX19_04109 at 417.445 kb on + strand at 417.446 kb on - strand at 417.538 kb on + strand at 417.538 kb on + strand at 417.538 kb on + strand at 417.538 kb on + strand at 417.539 kb on - strand at 417.539 kb on - strand at 417.539 kb on - strand at 417.539 kb on - strand at 417.539 kb on - strand at 417.539 kb on - strand at 417.672 kb on + strand, within MPMX19_04110 at 417.672 kb on + strand, within MPMX19_04110 at 417.672 kb on + strand, within MPMX19_04110 at 417.672 kb on + strand, within MPMX19_04110 at 417.672 kb on + strand, within MPMX19_04110 at 417.673 kb on - strand, within MPMX19_04110 at 417.673 kb on - strand, within MPMX19_04110 at 417.673 kb on - strand, within MPMX19_04110 at 417.673 kb on - strand, within MPMX19_04110 at 417.673 kb on - strand, within MPMX19_04110 at 417.673 kb on - strand, within MPMX19_04110 at 417.673 kb on - strand, within MPMX19_04110 at 417.673 kb on - strand, within MPMX19_04110 at 417.673 kb on - strand, within MPMX19_04110 at 418.132 kb on + strand at 418.132 kb on + strand at 418.133 kb on - strand at 418.133 kb on - strand at 418.209 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand at 418.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 416,068 + MPMX19_04108 0.34 -0.0 416,068 + MPMX19_04108 0.34 -0.1 416,068 + MPMX19_04108 0.34 +0.7 416,068 + MPMX19_04108 0.34 -0.5 416,068 + MPMX19_04108 0.34 -1.3 416,068 + MPMX19_04108 0.34 -2.2 416,068 + MPMX19_04108 0.34 -0.1 416,068 + MPMX19_04108 0.34 -0.3 416,068 + MPMX19_04108 0.34 +0.5 416,068 + MPMX19_04108 0.34 +0.4 416,068 + MPMX19_04108 0.34 +0.3 416,069 - MPMX19_04108 0.34 -1.9 416,069 - MPMX19_04108 0.34 +3.7 416,069 - MPMX19_04108 0.34 +1.0 416,069 - MPMX19_04108 0.34 -0.0 416,069 - MPMX19_04108 0.34 +0.3 416,069 - MPMX19_04108 0.34 +0.3 416,069 - MPMX19_04108 0.34 -0.7 416,069 - MPMX19_04108 0.34 -2.6 416,069 - MPMX19_04108 0.34 -0.7 416,069 - MPMX19_04108 0.34 -0.0 416,143 + MPMX19_04108 0.42 -1.9 416,143 + MPMX19_04108 0.42 -0.0 416,144 - MPMX19_04108 0.42 +0.0 416,144 - MPMX19_04108 0.42 -1.3 416,144 - MPMX19_04108 0.42 -0.9 416,144 - MPMX19_04108 0.42 +0.5 416,386 + MPMX19_04108 0.69 +1.0 416,386 + MPMX19_04108 0.69 -0.3 416,386 + MPMX19_04108 0.69 -0.8 416,386 + MPMX19_04108 0.69 +1.2 416,386 + MPMX19_04108 0.69 -0.4 416,386 + MPMX19_04108 0.69 -1.1 416,386 + MPMX19_04108 0.69 +2.1 416,386 + MPMX19_04108 0.69 -0.6 416,386 + MPMX19_04108 0.69 -0.6 416,386 + MPMX19_04108 0.69 -0.5 416,387 - MPMX19_04108 0.69 -0.8 416,387 - MPMX19_04108 0.69 -0.9 416,387 - MPMX19_04108 0.69 -1.6 416,387 - MPMX19_04108 0.69 -1.0 416,387 - MPMX19_04108 0.69 +0.4 416,387 - MPMX19_04108 0.69 -0.0 416,387 - MPMX19_04108 0.69 -0.6 416,387 - MPMX19_04108 0.69 -2.2 416,387 - MPMX19_04108 0.69 +0.5 416,387 - MPMX19_04108 0.69 +1.0 416,387 - MPMX19_04108 0.69 +0.7 416,387 - MPMX19_04108 0.69 +0.5 416,387 - MPMX19_04108 0.69 -0.8 416,387 - MPMX19_04108 0.69 -1.2 416,413 + MPMX19_04108 0.72 +0.4 416,413 + MPMX19_04108 0.72 -0.0 416,413 + MPMX19_04108 0.72 -0.4 416,413 + MPMX19_04108 0.72 -0.0 416,413 + MPMX19_04108 0.72 +0.9 416,413 + MPMX19_04108 0.72 -0.5 416,413 + MPMX19_04108 0.72 -0.9 416,413 + MPMX19_04108 0.72 +1.8 416,413 + MPMX19_04108 0.72 -1.3 416,413 + MPMX19_04108 0.72 +0.2 416,413 + MPMX19_04108 0.72 -1.2 416,414 - MPMX19_04108 0.72 -1.3 416,414 - MPMX19_04108 0.72 +0.6 416,414 - MPMX19_04108 0.72 +0.4 416,414 - MPMX19_04108 0.72 -0.5 416,414 - MPMX19_04108 0.72 -1.0 416,414 - MPMX19_04108 0.72 +0.8 416,414 - MPMX19_04108 0.72 +0.2 416,414 - MPMX19_04108 0.72 +2.3 416,414 - MPMX19_04108 0.72 -1.9 416,414 - MPMX19_04108 0.72 +0.5 416,414 - MPMX19_04108 0.72 -1.3 416,568 + MPMX19_04108 0.89 +0.1 416,568 + MPMX19_04108 0.89 +2.0 416,568 + MPMX19_04108 0.89 -0.5 416,742 + +1.0 416,742 + +0.5 416,742 + +0.3 416,743 - +0.5 416,743 - +0.4 416,799 + MPMX19_04109 0.14 +0.9 416,800 - MPMX19_04109 0.14 -0.0 416,817 + MPMX19_04109 0.17 +0.3 416,817 + MPMX19_04109 0.17 +0.3 416,817 + MPMX19_04109 0.17 +0.2 416,817 + MPMX19_04109 0.17 -0.2 416,818 - MPMX19_04109 0.17 +0.7 416,818 - MPMX19_04109 0.17 -0.6 416,818 - MPMX19_04109 0.17 +0.1 416,818 - MPMX19_04109 0.17 -0.5 416,818 - MPMX19_04109 0.17 -1.8 416,896 - MPMX19_04109 0.26 +0.4 417,130 - MPMX19_04109 0.55 -0.7 417,130 - MPMX19_04109 0.55 +0.1 417,237 + MPMX19_04109 0.68 -1.0 417,237 + MPMX19_04109 0.68 -1.6 417,237 + MPMX19_04109 0.68 +0.3 417,237 + MPMX19_04109 0.68 -0.5 417,237 + MPMX19_04109 0.68 +0.2 417,237 + MPMX19_04109 0.68 -1.3 417,237 + MPMX19_04109 0.68 +0.2 417,237 + MPMX19_04109 0.68 +0.9 417,237 + MPMX19_04109 0.68 +1.0 417,237 + MPMX19_04109 0.68 +2.1 417,237 + MPMX19_04109 0.68 -0.0 417,237 + MPMX19_04109 0.68 -0.6 417,237 + MPMX19_04109 0.68 +0.3 417,237 + MPMX19_04109 0.68 +0.8 417,238 - MPMX19_04109 0.68 +0.7 417,238 - MPMX19_04109 0.68 +2.0 417,238 - MPMX19_04109 0.68 -0.8 417,238 - MPMX19_04109 0.68 +0.0 417,238 - MPMX19_04109 0.68 -2.2 417,238 - MPMX19_04109 0.68 -0.3 417,238 - MPMX19_04109 0.68 +0.7 417,238 - MPMX19_04109 0.68 -1.3 417,238 - MPMX19_04109 0.68 +0.2 417,361 + MPMX19_04109 0.83 -0.0 417,445 + -0.5 417,446 - -0.3 417,538 + +0.7 417,538 + -2.2 417,538 + +0.1 417,538 + +1.5 417,539 - -0.3 417,539 - +1.5 417,539 - +1.4 417,539 - +1.0 417,539 - -0.8 417,539 - -0.8 417,672 + MPMX19_04110 0.21 -0.0 417,672 + MPMX19_04110 0.21 -0.0 417,672 + MPMX19_04110 0.21 -0.3 417,672 + MPMX19_04110 0.21 +0.6 417,672 + MPMX19_04110 0.21 +0.1 417,673 - MPMX19_04110 0.21 +0.2 417,673 - MPMX19_04110 0.21 -1.0 417,673 - MPMX19_04110 0.21 -1.0 417,673 - MPMX19_04110 0.21 -0.2 417,673 - MPMX19_04110 0.21 -0.9 417,673 - MPMX19_04110 0.21 -0.0 417,673 - MPMX19_04110 0.21 -0.6 417,673 - MPMX19_04110 0.21 -0.8 417,673 - MPMX19_04110 0.21 -1.1 418,132 + -1.0 418,132 + -0.3 418,133 - +0.1 418,133 - -0.4 418,209 + -1.5 418,295 + -1.2 418,295 + -0.1 418,295 + +0.3 418,295 + -0.3 418,295 + -0.4 418,295 + -1.1 418,295 + -1.3 418,295 + -1.3 418,295 + -0.4 418,295 + -2.2 418,295 + +1.5 418,295 + -1.0 418,295 + -0.5
Or see this region's nucleotide sequence