Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03873 and MPMX19_03874 are separated by 28 nucleotides MPMX19_03874 and MPMX19_03875 are separated by 178 nucleotides MPMX19_03875 and MPMX19_03876 are separated by 128 nucleotides
MPMX19_03873: MPMX19_03873 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 120,105 to 121,412
_03873
MPMX19_03874: MPMX19_03874 - hypothetical protein, at 121,441 to 121,893
_03874
MPMX19_03875: MPMX19_03875 - hypothetical protein, at 122,072 to 123,238
_03875
MPMX19_03876: MPMX19_03876 - hypothetical protein, at 123,367 to 127,248
_03876
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 121.072 kb on - strand, within MPMX19_03873 at 121.072 kb on - strand, within MPMX19_03873 at 121.072 kb on - strand, within MPMX19_03873 at 121.072 kb on - strand, within MPMX19_03873 at 121.072 kb on - strand, within MPMX19_03873 at 121.565 kb on + strand, within MPMX19_03874 at 121.565 kb on + strand, within MPMX19_03874 at 121.565 kb on + strand, within MPMX19_03874 at 121.566 kb on - strand, within MPMX19_03874 at 121.577 kb on + strand, within MPMX19_03874 at 121.577 kb on + strand, within MPMX19_03874 at 121.577 kb on + strand, within MPMX19_03874 at 121.577 kb on + strand, within MPMX19_03874 at 121.578 kb on - strand, within MPMX19_03874 at 121.578 kb on - strand, within MPMX19_03874 at 121.727 kb on + strand, within MPMX19_03874 at 121.727 kb on + strand, within MPMX19_03874 at 121.727 kb on + strand, within MPMX19_03874 at 121.728 kb on - strand, within MPMX19_03874 at 121.803 kb on + strand, within MPMX19_03874 at 121.970 kb on - strand at 122.055 kb on + strand at 122.180 kb on - strand at 122.181 kb on + strand at 122.181 kb on + strand at 122.181 kb on + strand at 122.181 kb on + strand at 122.181 kb on + strand at 122.181 kb on + strand at 122.181 kb on + strand at 122.181 kb on + strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.182 kb on - strand at 122.524 kb on + strand, within MPMX19_03875 at 122.525 kb on - strand, within MPMX19_03875 at 122.525 kb on - strand, within MPMX19_03875 at 122.587 kb on + strand, within MPMX19_03875 at 122.587 kb on + strand, within MPMX19_03875 at 122.587 kb on + strand, within MPMX19_03875 at 122.587 kb on + strand, within MPMX19_03875 at 122.587 kb on + strand, within MPMX19_03875 at 122.588 kb on - strand, within MPMX19_03875 at 122.588 kb on - strand, within MPMX19_03875 at 122.588 kb on - strand, within MPMX19_03875 at 122.588 kb on - strand, within MPMX19_03875 at 122.588 kb on - strand, within MPMX19_03875 at 122.588 kb on - strand, within MPMX19_03875 at 122.588 kb on - strand, within MPMX19_03875 at 122.588 kb on - strand, within MPMX19_03875 at 122.833 kb on - strand, within MPMX19_03875 at 122.833 kb on - strand, within MPMX19_03875 at 122.833 kb on - strand, within MPMX19_03875 at 122.833 kb on - strand, within MPMX19_03875 at 122.833 kb on - strand, within MPMX19_03875 at 122.833 kb on - strand, within MPMX19_03875 at 122.833 kb on - strand, within MPMX19_03875 at 122.859 kb on + strand, within MPMX19_03875 at 122.859 kb on + strand, within MPMX19_03875 at 122.860 kb on - strand, within MPMX19_03875 at 123.057 kb on + strand, within MPMX19_03875 at 123.058 kb on - strand, within MPMX19_03875 at 123.170 kb on - strand at 123.170 kb on - strand at 123.170 kb on - strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.298 kb on + strand at 123.299 kb on - strand at 123.299 kb on - strand at 123.299 kb on - strand at 123.299 kb on - strand at 123.299 kb on - strand at 123.299 kb on - strand at 123.299 kb on - strand at 123.299 kb on - strand at 123.299 kb on - strand at 123.335 kb on - strand at 123.338 kb on + strand at 123.338 kb on + strand at 123.389 kb on + strand at 123.389 kb on + strand at 123.389 kb on + strand at 123.389 kb on + strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.409 kb on + strand at 123.410 kb on - strand at 123.410 kb on - strand at 123.410 kb on - strand at 123.410 kb on - strand at 123.410 kb on - strand at 123.466 kb on + strand at 123.793 kb on + strand, within MPMX19_03876 at 123.793 kb on + strand, within MPMX19_03876 at 123.794 kb on - strand, within MPMX19_03876 at 123.925 kb on + strand, within MPMX19_03876 at 123.925 kb on + strand, within MPMX19_03876 at 123.925 kb on + strand, within MPMX19_03876 at 123.925 kb on + strand, within MPMX19_03876 at 123.926 kb on - strand, within MPMX19_03876 at 123.926 kb on - strand, within MPMX19_03876 at 124.033 kb on + strand, within MPMX19_03876 at 124.033 kb on + strand, within MPMX19_03876 at 124.034 kb on - strand, within MPMX19_03876 at 124.034 kb on - strand, within MPMX19_03876 at 124.034 kb on - strand, within MPMX19_03876 at 124.072 kb on + strand, within MPMX19_03876 at 124.073 kb on - strand, within MPMX19_03876 at 124.073 kb on - strand, within MPMX19_03876 at 124.105 kb on + strand, within MPMX19_03876 at 124.105 kb on + strand, within MPMX19_03876 at 124.105 kb on + strand, within MPMX19_03876 at 124.105 kb on + strand, within MPMX19_03876 at 124.106 kb on - strand, within MPMX19_03876 at 124.106 kb on - strand, within MPMX19_03876 at 124.106 kb on - strand, within MPMX19_03876 at 124.106 kb on - strand, within MPMX19_03876 at 124.106 kb on - strand, within MPMX19_03876 at 124.106 kb on - strand, within MPMX19_03876 at 124.106 kb on - strand, within MPMX19_03876 at 124.106 kb on - strand, within MPMX19_03876 at 124.168 kb on + strand, within MPMX19_03876 at 124.168 kb on + strand, within MPMX19_03876 at 124.168 kb on + strand, within MPMX19_03876 at 124.168 kb on + strand, within MPMX19_03876 at 124.169 kb on - strand, within MPMX19_03876
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 121,072 - MPMX19_03873 0.74 +0.0 121,072 - MPMX19_03873 0.74 +0.2 121,072 - MPMX19_03873 0.74 -0.0 121,072 - MPMX19_03873 0.74 -0.7 121,072 - MPMX19_03873 0.74 -0.7 121,565 + MPMX19_03874 0.27 -1.2 121,565 + MPMX19_03874 0.27 +0.0 121,565 + MPMX19_03874 0.27 -0.6 121,566 - MPMX19_03874 0.28 +0.3 121,577 + MPMX19_03874 0.30 -0.7 121,577 + MPMX19_03874 0.30 +0.8 121,577 + MPMX19_03874 0.30 +0.7 121,577 + MPMX19_03874 0.30 +0.3 121,578 - MPMX19_03874 0.30 +0.6 121,578 - MPMX19_03874 0.30 +1.0 121,727 + MPMX19_03874 0.63 -0.3 121,727 + MPMX19_03874 0.63 -0.8 121,727 + MPMX19_03874 0.63 -1.4 121,728 - MPMX19_03874 0.63 +0.8 121,803 + MPMX19_03874 0.80 -0.6 121,970 - -0.6 122,055 + -0.7 122,180 - -0.5 122,181 + -0.7 122,181 + -0.4 122,181 + -0.6 122,181 + -0.5 122,181 + -0.1 122,181 + -0.4 122,181 + -1.2 122,181 + -0.1 122,182 - -1.6 122,182 - -1.7 122,182 - -1.8 122,182 - +0.4 122,182 - -1.0 122,182 - +0.0 122,182 - +0.7 122,182 - -1.4 122,182 - -1.0 122,182 - +0.1 122,182 - +0.0 122,182 - -0.4 122,182 - -0.1 122,524 + MPMX19_03875 0.39 +0.9 122,525 - MPMX19_03875 0.39 +0.4 122,525 - MPMX19_03875 0.39 -0.7 122,587 + MPMX19_03875 0.44 -0.2 122,587 + MPMX19_03875 0.44 -0.9 122,587 + MPMX19_03875 0.44 -0.7 122,587 + MPMX19_03875 0.44 -0.1 122,587 + MPMX19_03875 0.44 -1.2 122,588 - MPMX19_03875 0.44 -1.2 122,588 - MPMX19_03875 0.44 +0.1 122,588 - MPMX19_03875 0.44 -1.1 122,588 - MPMX19_03875 0.44 -0.4 122,588 - MPMX19_03875 0.44 -1.0 122,588 - MPMX19_03875 0.44 -1.9 122,588 - MPMX19_03875 0.44 -1.5 122,588 - MPMX19_03875 0.44 -1.2 122,833 - MPMX19_03875 0.65 -1.2 122,833 - MPMX19_03875 0.65 -2.3 122,833 - MPMX19_03875 0.65 -1.2 122,833 - MPMX19_03875 0.65 -0.2 122,833 - MPMX19_03875 0.65 -1.8 122,833 - MPMX19_03875 0.65 -0.7 122,833 - MPMX19_03875 0.65 +0.6 122,859 + MPMX19_03875 0.67 +0.2 122,859 + MPMX19_03875 0.67 -0.9 122,860 - MPMX19_03875 0.68 -1.4 123,057 + MPMX19_03875 0.84 -2.0 123,058 - MPMX19_03875 0.84 -0.5 123,170 - -1.5 123,170 - -0.6 123,170 - -2.2 123,298 + +0.8 123,298 + -0.7 123,298 + -0.7 123,298 + -0.6 123,298 + -0.6 123,298 + -1.6 123,298 + -0.7 123,298 + +0.9 123,298 + -0.5 123,298 + -1.4 123,298 + -0.4 123,298 + -0.7 123,298 + -0.6 123,298 + -0.8 123,298 + -1.9 123,299 - -0.1 123,299 - -0.4 123,299 - +0.0 123,299 - +0.8 123,299 - +0.4 123,299 - -0.5 123,299 - -0.4 123,299 - -1.7 123,299 - +1.3 123,335 - -2.4 123,338 + -1.6 123,338 + -0.2 123,389 + -0.7 123,389 + +0.9 123,389 + -1.2 123,389 + -1.4 123,409 + -1.6 123,409 + +1.6 123,409 + +1.6 123,409 + -1.6 123,409 + -1.4 123,409 + -0.5 123,409 + -2.0 123,409 + -0.8 123,409 + -0.8 123,409 + +0.0 123,410 - +0.0 123,410 - -1.0 123,410 - +0.6 123,410 - -1.0 123,410 - +0.9 123,466 + -1.6 123,793 + MPMX19_03876 0.11 +0.6 123,793 + MPMX19_03876 0.11 -1.6 123,794 - MPMX19_03876 0.11 +0.3 123,925 + MPMX19_03876 0.14 +1.4 123,925 + MPMX19_03876 0.14 -2.1 123,925 + MPMX19_03876 0.14 -0.7 123,925 + MPMX19_03876 0.14 -0.3 123,926 - MPMX19_03876 0.14 +0.2 123,926 - MPMX19_03876 0.14 +0.8 124,033 + MPMX19_03876 0.17 -0.3 124,033 + MPMX19_03876 0.17 +1.6 124,034 - MPMX19_03876 0.17 +0.6 124,034 - MPMX19_03876 0.17 -2.0 124,034 - MPMX19_03876 0.17 -0.4 124,072 + MPMX19_03876 0.18 -1.2 124,073 - MPMX19_03876 0.18 +0.9 124,073 - MPMX19_03876 0.18 -0.9 124,105 + MPMX19_03876 0.19 +0.0 124,105 + MPMX19_03876 0.19 -1.1 124,105 + MPMX19_03876 0.19 +0.5 124,105 + MPMX19_03876 0.19 -0.6 124,106 - MPMX19_03876 0.19 +0.1 124,106 - MPMX19_03876 0.19 -0.3 124,106 - MPMX19_03876 0.19 +1.1 124,106 - MPMX19_03876 0.19 -0.1 124,106 - MPMX19_03876 0.19 +1.0 124,106 - MPMX19_03876 0.19 -0.8 124,106 - MPMX19_03876 0.19 +0.0 124,106 - MPMX19_03876 0.19 -0.6 124,168 + MPMX19_03876 0.21 +1.3 124,168 + MPMX19_03876 0.21 -1.5 124,168 + MPMX19_03876 0.21 +1.2 124,168 + MPMX19_03876 0.21 +1.9 124,169 - MPMX19_03876 0.21 -0.7
Or see this region's nucleotide sequence