Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03835 and MPMX19_03836 are separated by 131 nucleotides MPMX19_03836 and MPMX19_03837 are separated by 109 nucleotides MPMX19_03837 and MPMX19_03838 are separated by 12 nucleotides
MPMX19_03835: MPMX19_03835 - Lipoprotein E, at 73,418 to 74,299
_03835
MPMX19_03836: MPMX19_03836 - Disulfide-bond oxidoreductase YfcG, at 74,431 to 75,063
_03836
MPMX19_03837: MPMX19_03837 - HTH-type transcriptional regulator PgrR, at 75,173 to 76,072
_03837
MPMX19_03838: MPMX19_03838 - Hercynine oxygenase, at 76,085 to 77,080
_03838
Position (kb) 75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 74.414 kb on + strand at 74.415 kb on - strand at 74.535 kb on + strand, within MPMX19_03836 at 74.536 kb on - strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.561 kb on + strand, within MPMX19_03836 at 74.562 kb on - strand, within MPMX19_03836 at 74.562 kb on - strand, within MPMX19_03836 at 74.562 kb on - strand, within MPMX19_03836 at 74.562 kb on - strand, within MPMX19_03836 at 74.562 kb on - strand, within MPMX19_03836 at 74.567 kb on + strand, within MPMX19_03836 at 74.567 kb on + strand, within MPMX19_03836 at 74.567 kb on + strand, within MPMX19_03836 at 74.567 kb on + strand, within MPMX19_03836 at 74.567 kb on + strand, within MPMX19_03836 at 74.567 kb on + strand, within MPMX19_03836 at 74.568 kb on - strand, within MPMX19_03836 at 74.568 kb on - strand, within MPMX19_03836 at 74.568 kb on - strand, within MPMX19_03836 at 74.568 kb on - strand, within MPMX19_03836 at 74.568 kb on - strand, within MPMX19_03836 at 74.568 kb on - strand, within MPMX19_03836 at 74.568 kb on - strand, within MPMX19_03836 at 74.568 kb on - strand, within MPMX19_03836 at 74.820 kb on - strand, within MPMX19_03836 at 74.820 kb on - strand, within MPMX19_03836 at 74.834 kb on + strand, within MPMX19_03836 at 74.834 kb on + strand, within MPMX19_03836 at 74.835 kb on - strand, within MPMX19_03836 at 74.835 kb on - strand, within MPMX19_03836 at 74.835 kb on - strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.957 kb on + strand, within MPMX19_03836 at 74.958 kb on - strand, within MPMX19_03836 at 74.958 kb on - strand, within MPMX19_03836 at 74.958 kb on - strand, within MPMX19_03836 at 74.958 kb on - strand, within MPMX19_03836 at 74.958 kb on - strand, within MPMX19_03836 at 74.958 kb on - strand, within MPMX19_03836 at 74.958 kb on - strand, within MPMX19_03836 at 74.958 kb on - strand, within MPMX19_03836 at 74.963 kb on + strand, within MPMX19_03836 at 74.964 kb on - strand, within MPMX19_03836 at 75.029 kb on + strand at 75.029 kb on + strand at 75.029 kb on + strand at 75.029 kb on + strand at 75.029 kb on + strand at 75.030 kb on - strand at 75.030 kb on - strand at 75.030 kb on - strand at 75.030 kb on - strand at 75.130 kb on + strand at 75.130 kb on + strand at 75.131 kb on - strand at 75.131 kb on - strand at 75.173 kb on - strand at 75.173 kb on - strand at 75.398 kb on + strand, within MPMX19_03837 at 75.398 kb on + strand, within MPMX19_03837 at 75.398 kb on + strand, within MPMX19_03837 at 75.399 kb on - strand, within MPMX19_03837 at 75.680 kb on + strand, within MPMX19_03837 at 75.681 kb on - strand, within MPMX19_03837 at 75.681 kb on - strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.893 kb on + strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 75.894 kb on - strand, within MPMX19_03837 at 76.113 kb on + strand at 76.113 kb on + strand at 76.113 kb on + strand at 76.122 kb on + strand at 76.122 kb on + strand at 76.122 kb on + strand at 76.122 kb on + strand at 76.123 kb on - strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.167 kb on + strand at 76.168 kb on - strand at 76.168 kb on - strand at 76.168 kb on - strand at 76.168 kb on - strand at 76.284 kb on + strand, within MPMX19_03838 at 76.284 kb on + strand, within MPMX19_03838 at 76.284 kb on + strand, within MPMX19_03838 at 76.284 kb on + strand, within MPMX19_03838 at 76.284 kb on + strand, within MPMX19_03838 at 76.285 kb on - strand, within MPMX19_03838 at 76.285 kb on - strand, within MPMX19_03838 at 76.285 kb on - strand, within MPMX19_03838 at 76.308 kb on + strand, within MPMX19_03838 at 76.309 kb on - strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.473 kb on + strand, within MPMX19_03838 at 76.474 kb on - strand, within MPMX19_03838 at 76.474 kb on - strand, within MPMX19_03838 at 76.503 kb on + strand, within MPMX19_03838 at 76.503 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.539 kb on + strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.540 kb on - strand, within MPMX19_03838 at 76.554 kb on + strand, within MPMX19_03838 at 76.555 kb on - strand, within MPMX19_03838 at 76.654 kb on - strand, within MPMX19_03838 at 76.654 kb on - strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.707 kb on + strand, within MPMX19_03838 at 76.708 kb on - strand, within MPMX19_03838 at 76.708 kb on - strand, within MPMX19_03838 at 76.708 kb on - strand, within MPMX19_03838 at 76.708 kb on - strand, within MPMX19_03838 at 76.728 kb on + strand, within MPMX19_03838 at 76.728 kb on + strand, within MPMX19_03838 at 76.728 kb on + strand, within MPMX19_03838 at 76.729 kb on - strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.824 kb on + strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838 at 76.825 kb on - strand, within MPMX19_03838
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 74,414 + -0.2 74,415 - -0.3 74,535 + MPMX19_03836 0.16 -1.6 74,536 - MPMX19_03836 0.17 +0.6 74,561 + MPMX19_03836 0.21 -0.5 74,561 + MPMX19_03836 0.21 -1.2 74,561 + MPMX19_03836 0.21 +0.3 74,561 + MPMX19_03836 0.21 -0.9 74,561 + MPMX19_03836 0.21 +0.0 74,561 + MPMX19_03836 0.21 +0.3 74,561 + MPMX19_03836 0.21 -1.1 74,561 + MPMX19_03836 0.21 -0.9 74,561 + MPMX19_03836 0.21 +0.4 74,561 + MPMX19_03836 0.21 +0.4 74,561 + MPMX19_03836 0.21 -0.6 74,561 + MPMX19_03836 0.21 -0.4 74,561 + MPMX19_03836 0.21 -0.2 74,561 + MPMX19_03836 0.21 -0.6 74,562 - MPMX19_03836 0.21 -0.1 74,562 - MPMX19_03836 0.21 -1.4 74,562 - MPMX19_03836 0.21 +0.1 74,562 - MPMX19_03836 0.21 -0.7 74,562 - MPMX19_03836 0.21 -1.6 74,567 + MPMX19_03836 0.21 -1.6 74,567 + MPMX19_03836 0.21 -1.0 74,567 + MPMX19_03836 0.21 -0.7 74,567 + MPMX19_03836 0.21 -0.7 74,567 + MPMX19_03836 0.21 -0.9 74,567 + MPMX19_03836 0.21 -2.3 74,568 - MPMX19_03836 0.22 -0.2 74,568 - MPMX19_03836 0.22 -0.5 74,568 - MPMX19_03836 0.22 -0.6 74,568 - MPMX19_03836 0.22 +1.6 74,568 - MPMX19_03836 0.22 -0.5 74,568 - MPMX19_03836 0.22 -0.0 74,568 - MPMX19_03836 0.22 -0.2 74,568 - MPMX19_03836 0.22 +0.0 74,820 - MPMX19_03836 0.61 +0.6 74,820 - MPMX19_03836 0.61 +0.3 74,834 + MPMX19_03836 0.64 +0.6 74,834 + MPMX19_03836 0.64 -1.6 74,835 - MPMX19_03836 0.64 +0.4 74,835 - MPMX19_03836 0.64 +0.3 74,835 - MPMX19_03836 0.64 +0.8 74,957 + MPMX19_03836 0.83 -0.7 74,957 + MPMX19_03836 0.83 -2.2 74,957 + MPMX19_03836 0.83 +1.2 74,957 + MPMX19_03836 0.83 +0.5 74,957 + MPMX19_03836 0.83 -0.7 74,957 + MPMX19_03836 0.83 -0.4 74,957 + MPMX19_03836 0.83 -0.2 74,957 + MPMX19_03836 0.83 -0.7 74,957 + MPMX19_03836 0.83 +0.4 74,957 + MPMX19_03836 0.83 +0.1 74,958 - MPMX19_03836 0.83 +0.2 74,958 - MPMX19_03836 0.83 -1.8 74,958 - MPMX19_03836 0.83 +0.7 74,958 - MPMX19_03836 0.83 -0.2 74,958 - MPMX19_03836 0.83 +0.1 74,958 - MPMX19_03836 0.83 +0.0 74,958 - MPMX19_03836 0.83 +0.0 74,958 - MPMX19_03836 0.83 -0.4 74,963 + MPMX19_03836 0.84 +0.7 74,964 - MPMX19_03836 0.84 -1.1 75,029 + -0.1 75,029 + +0.7 75,029 + -0.1 75,029 + -0.6 75,029 + -1.6 75,030 - +0.0 75,030 - +0.3 75,030 - -1.0 75,030 - -0.4 75,130 + -0.1 75,130 + -1.2 75,131 - -0.5 75,131 - -1.7 75,173 - -1.1 75,173 - +1.2 75,398 + MPMX19_03837 0.25 -2.3 75,398 + MPMX19_03837 0.25 +0.2 75,398 + MPMX19_03837 0.25 -1.7 75,399 - MPMX19_03837 0.25 +0.0 75,680 + MPMX19_03837 0.56 -0.9 75,681 - MPMX19_03837 0.56 -0.4 75,681 - MPMX19_03837 0.56 -0.4 75,893 + MPMX19_03837 0.80 -0.8 75,893 + MPMX19_03837 0.80 +0.6 75,893 + MPMX19_03837 0.80 -0.5 75,893 + MPMX19_03837 0.80 -1.4 75,893 + MPMX19_03837 0.80 +0.4 75,893 + MPMX19_03837 0.80 -0.3 75,894 - MPMX19_03837 0.80 +0.5 75,894 - MPMX19_03837 0.80 -0.6 75,894 - MPMX19_03837 0.80 -1.6 75,894 - MPMX19_03837 0.80 -1.2 75,894 - MPMX19_03837 0.80 -1.2 76,113 + -2.4 76,113 + -0.9 76,113 + -1.3 76,122 + +0.9 76,122 + +1.3 76,122 + -1.2 76,122 + -1.0 76,123 - -3.3 76,167 + -0.8 76,167 + -0.4 76,167 + -1.0 76,167 + -0.4 76,167 + -0.4 76,167 + +0.1 76,167 + -0.5 76,167 + -0.3 76,167 + -1.3 76,167 + -1.9 76,167 + -0.2 76,167 + -0.4 76,168 - -2.3 76,168 - -1.5 76,168 - +0.2 76,168 - -0.3 76,284 + MPMX19_03838 0.20 -1.6 76,284 + MPMX19_03838 0.20 +0.7 76,284 + MPMX19_03838 0.20 +0.7 76,284 + MPMX19_03838 0.20 -1.3 76,284 + MPMX19_03838 0.20 -1.2 76,285 - MPMX19_03838 0.20 -1.2 76,285 - MPMX19_03838 0.20 +0.1 76,285 - MPMX19_03838 0.20 -0.3 76,308 + MPMX19_03838 0.22 -0.4 76,309 - MPMX19_03838 0.22 -1.7 76,473 + MPMX19_03838 0.39 +0.4 76,473 + MPMX19_03838 0.39 -1.1 76,473 + MPMX19_03838 0.39 -1.7 76,473 + MPMX19_03838 0.39 +0.4 76,473 + MPMX19_03838 0.39 -0.8 76,473 + MPMX19_03838 0.39 +0.0 76,474 - MPMX19_03838 0.39 -1.7 76,474 - MPMX19_03838 0.39 -0.2 76,503 + MPMX19_03838 0.42 +0.6 76,503 + MPMX19_03838 0.42 -0.3 76,539 + MPMX19_03838 0.46 -0.6 76,539 + MPMX19_03838 0.46 -1.7 76,539 + MPMX19_03838 0.46 -0.6 76,539 + MPMX19_03838 0.46 -0.4 76,539 + MPMX19_03838 0.46 -1.1 76,539 + MPMX19_03838 0.46 -1.7 76,539 + MPMX19_03838 0.46 -0.4 76,539 + MPMX19_03838 0.46 -1.0 76,539 + MPMX19_03838 0.46 -1.2 76,539 + MPMX19_03838 0.46 -0.5 76,539 + MPMX19_03838 0.46 +0.6 76,539 + MPMX19_03838 0.46 +0.6 76,539 + MPMX19_03838 0.46 -0.9 76,539 + MPMX19_03838 0.46 +0.2 76,539 + MPMX19_03838 0.46 -0.4 76,539 + MPMX19_03838 0.46 +0.5 76,539 + MPMX19_03838 0.46 -0.4 76,539 + MPMX19_03838 0.46 -1.4 76,539 + MPMX19_03838 0.46 -1.7 76,539 + MPMX19_03838 0.46 +0.5 76,539 + MPMX19_03838 0.46 -0.6 76,539 + MPMX19_03838 0.46 +1.0 76,539 + MPMX19_03838 0.46 -1.6 76,539 + MPMX19_03838 0.46 -1.7 76,539 + MPMX19_03838 0.46 -1.3 76,539 + MPMX19_03838 0.46 -1.0 76,539 + MPMX19_03838 0.46 -0.7 76,540 - MPMX19_03838 0.46 +0.0 76,540 - MPMX19_03838 0.46 -0.9 76,540 - MPMX19_03838 0.46 +0.7 76,540 - MPMX19_03838 0.46 +0.3 76,540 - MPMX19_03838 0.46 -1.6 76,540 - MPMX19_03838 0.46 +0.2 76,540 - MPMX19_03838 0.46 -1.7 76,540 - MPMX19_03838 0.46 -0.8 76,540 - MPMX19_03838 0.46 -0.6 76,540 - MPMX19_03838 0.46 +0.3 76,540 - MPMX19_03838 0.46 -0.6 76,540 - MPMX19_03838 0.46 -0.7 76,540 - MPMX19_03838 0.46 +0.0 76,540 - MPMX19_03838 0.46 -2.4 76,554 + MPMX19_03838 0.47 -0.1 76,555 - MPMX19_03838 0.47 +0.8 76,654 - MPMX19_03838 0.57 +0.4 76,654 - MPMX19_03838 0.57 -0.7 76,707 + MPMX19_03838 0.62 -1.2 76,707 + MPMX19_03838 0.62 +0.6 76,707 + MPMX19_03838 0.62 -0.4 76,707 + MPMX19_03838 0.62 -0.4 76,707 + MPMX19_03838 0.62 -1.4 76,707 + MPMX19_03838 0.62 -2.2 76,707 + MPMX19_03838 0.62 +0.6 76,708 - MPMX19_03838 0.63 -0.1 76,708 - MPMX19_03838 0.63 -0.6 76,708 - MPMX19_03838 0.63 -0.1 76,708 - MPMX19_03838 0.63 -0.3 76,728 + MPMX19_03838 0.65 -0.0 76,728 + MPMX19_03838 0.65 +1.2 76,728 + MPMX19_03838 0.65 +1.6 76,729 - MPMX19_03838 0.65 -0.6 76,824 + MPMX19_03838 0.74 -0.8 76,824 + MPMX19_03838 0.74 -1.4 76,824 + MPMX19_03838 0.74 -0.2 76,824 + MPMX19_03838 0.74 +0.0 76,824 + MPMX19_03838 0.74 -2.0 76,824 + MPMX19_03838 0.74 -0.4 76,824 + MPMX19_03838 0.74 -2.3 76,824 + MPMX19_03838 0.74 -1.0 76,824 + MPMX19_03838 0.74 -0.7 76,825 - MPMX19_03838 0.74 -1.4 76,825 - MPMX19_03838 0.74 -0.7 76,825 - MPMX19_03838 0.74 +0.5 76,825 - MPMX19_03838 0.74 -0.6 76,825 - MPMX19_03838 0.74 -1.7 76,825 - MPMX19_03838 0.74 +0.4
Or see this region's nucleotide sequence