Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03492

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03491 and MPMX19_03492 are separated by 289 nucleotidesMPMX19_03492 and MPMX19_03493 are separated by 285 nucleotides MPMX19_03491: MPMX19_03491 - putative FAD-linked oxidoreductase, at 904,483 to 905,904 _03491 MPMX19_03492: MPMX19_03492 - 3'-5' exonuclease DinG, at 906,194 to 907,132 _03492 MPMX19_03493: MPMX19_03493 - hypothetical protein, at 907,418 to 909,121 _03493 Position (kb) 906 907 908Strain fitness (log2 ratio) -2 -1 0 1 2at 905.336 kb on + strand, within MPMX19_03491at 905.363 kb on + strand, within MPMX19_03491at 905.363 kb on + strand, within MPMX19_03491at 905.519 kb on + strand, within MPMX19_03491at 905.926 kb on + strandat 905.926 kb on + strandat 905.926 kb on + strandat 905.926 kb on + strandat 905.927 kb on - strandat 905.927 kb on - strandat 905.927 kb on - strandat 905.927 kb on - strandat 905.968 kb on + strandat 905.969 kb on - strandat 906.011 kb on + strandat 906.011 kb on + strandat 906.012 kb on - strandat 906.012 kb on - strandat 906.012 kb on - strandat 906.140 kb on + strandat 906.211 kb on + strandat 906.211 kb on + strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.879 kb on - strand, within MPMX19_03492at 906.879 kb on - strand, within MPMX19_03492at 906.879 kb on - strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.989 kb on + strand, within MPMX19_03492at 906.990 kb on - strand, within MPMX19_03492at 906.990 kb on - strand, within MPMX19_03492at 906.990 kb on - strand, within MPMX19_03492at 906.990 kb on - strand, within MPMX19_03492at 907.055 kb on + strandat 907.055 kb on + strandat 907.055 kb on + strandat 907.056 kb on - strandat 907.056 kb on - strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.185 kb on + strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.368 kb on + strandat 907.368 kb on + strandat 907.369 kb on - strandat 907.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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905,336 + MPMX19_03491 0.60 -1.8
905,363 + MPMX19_03491 0.62 +0.2
905,363 + MPMX19_03491 0.62 -1.4
905,519 + MPMX19_03491 0.73 -0.9
905,926 + -1.7
905,926 + +1.1
905,926 + -1.3
905,926 + +1.1
905,927 - +0.7
905,927 - -2.1
905,927 - -0.5
905,927 - -0.6
905,968 + +0.0
905,969 - -1.7
906,011 + +0.2
906,011 + -0.3
906,012 - -0.6
906,012 - -0.4
906,012 - -2.4
906,140 + -0.8
906,211 + +0.5
906,211 + -1.1
906,212 - -1.5
906,212 - -0.4
906,212 - -0.1
906,212 - -0.8
906,212 - -0.7
906,212 - -0.3
906,879 - MPMX19_03492 0.73 -0.2
906,879 - MPMX19_03492 0.73 -0.3
906,879 - MPMX19_03492 0.73 +0.5
906,989 + MPMX19_03492 0.85 +0.8
906,989 + MPMX19_03492 0.85 -1.1
906,989 + MPMX19_03492 0.85 -0.5
906,989 + MPMX19_03492 0.85 -0.4
906,989 + MPMX19_03492 0.85 +0.9
906,989 + MPMX19_03492 0.85 +0.2
906,989 + MPMX19_03492 0.85 +0.4
906,990 - MPMX19_03492 0.85 +0.2
906,990 - MPMX19_03492 0.85 -0.7
906,990 - MPMX19_03492 0.85 +0.3
906,990 - MPMX19_03492 0.85 +2.2
907,055 + -1.7
907,055 + -2.1
907,055 + -1.0
907,056 - -0.5
907,056 - -0.8
907,185 + +1.2
907,185 + -0.8
907,185 + -0.4
907,185 + -1.1
907,185 + -0.1
907,185 + -0.9
907,185 + -0.4
907,185 + -0.0
907,185 + +0.0
907,186 - -0.5
907,186 - -0.9
907,186 - -2.4
907,186 - -0.7
907,186 - +0.3
907,186 - +0.1
907,186 - -0.6
907,186 - -1.5
907,368 + -1.0
907,368 + -0.7
907,369 - -1.5
907,369 - -0.5

Or see this region's nucleotide sequence