Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03274 and MPMX19_03275 are separated by 159 nucleotides MPMX19_03275 and MPMX19_03276 are separated by 160 nucleotides MPMX19_03276 and MPMX19_03277 are separated by 128 nucleotides
MPMX19_03274: MPMX19_03274 - hypothetical protein, at 619,947 to 620,942
_03274
MPMX19_03275: MPMX19_03275 - HTH-type transcriptional regulator PgrR, at 621,102 to 622,043
_03275
MPMX19_03276: MPMX19_03276 - hypothetical protein, at 622,204 to 622,644
_03276
MPMX19_03277: MPMX19_03277 - hypothetical protein, at 622,773 to 623,816
_03277
Position (kb) 621
622
623 Strain fitness (log2 ratio) -2
-1
0
1 at 620.151 kb on + strand, within MPMX19_03274 at 620.151 kb on + strand, within MPMX19_03274 at 620.215 kb on + strand, within MPMX19_03274 at 620.215 kb on + strand, within MPMX19_03274 at 620.215 kb on + strand, within MPMX19_03274 at 620.317 kb on + strand, within MPMX19_03274 at 620.318 kb on - strand, within MPMX19_03274 at 620.318 kb on - strand, within MPMX19_03274 at 620.318 kb on - strand, within MPMX19_03274 at 620.563 kb on + strand, within MPMX19_03274 at 620.564 kb on - strand, within MPMX19_03274 at 620.788 kb on + strand, within MPMX19_03274 at 620.840 kb on + strand, within MPMX19_03274 at 620.840 kb on + strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 620.841 kb on - strand, within MPMX19_03274 at 621.022 kb on + strand at 621.022 kb on + strand at 621.022 kb on + strand at 621.022 kb on + strand at 621.022 kb on + strand at 621.022 kb on + strand at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.294 kb on + strand, within MPMX19_03275 at 621.295 kb on - strand, within MPMX19_03275 at 621.295 kb on - strand, within MPMX19_03275 at 621.295 kb on - strand, within MPMX19_03275 at 621.295 kb on - strand, within MPMX19_03275 at 621.597 kb on + strand, within MPMX19_03275 at 621.597 kb on + strand, within MPMX19_03275 at 621.597 kb on + strand, within MPMX19_03275 at 621.598 kb on - strand, within MPMX19_03275 at 621.612 kb on + strand, within MPMX19_03275 at 621.612 kb on + strand, within MPMX19_03275 at 621.613 kb on - strand, within MPMX19_03275 at 621.613 kb on - strand, within MPMX19_03275 at 622.099 kb on + strand at 622.528 kb on + strand, within MPMX19_03276 at 622.528 kb on + strand, within MPMX19_03276 at 622.528 kb on + strand, within MPMX19_03276 at 622.528 kb on + strand, within MPMX19_03276 at 622.908 kb on + strand, within MPMX19_03277 at 622.908 kb on + strand, within MPMX19_03277 at 622.909 kb on - strand, within MPMX19_03277 at 622.909 kb on - strand, within MPMX19_03277 at 622.959 kb on + strand, within MPMX19_03277 at 622.959 kb on + strand, within MPMX19_03277 at 622.959 kb on + strand, within MPMX19_03277 at 622.960 kb on - strand, within MPMX19_03277 at 622.960 kb on - strand, within MPMX19_03277
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 620,151 + MPMX19_03274 0.20 -2.3 620,151 + MPMX19_03274 0.20 +0.0 620,215 + MPMX19_03274 0.27 +0.4 620,215 + MPMX19_03274 0.27 -1.7 620,215 + MPMX19_03274 0.27 -0.0 620,317 + MPMX19_03274 0.37 -0.8 620,318 - MPMX19_03274 0.37 -0.2 620,318 - MPMX19_03274 0.37 +0.2 620,318 - MPMX19_03274 0.37 -0.8 620,563 + MPMX19_03274 0.62 -0.7 620,564 - MPMX19_03274 0.62 -1.0 620,788 + MPMX19_03274 0.84 +0.5 620,840 + MPMX19_03274 0.90 -0.1 620,840 + MPMX19_03274 0.90 -0.1 620,841 - MPMX19_03274 0.90 -0.8 620,841 - MPMX19_03274 0.90 +0.2 620,841 - MPMX19_03274 0.90 -1.1 620,841 - MPMX19_03274 0.90 -0.1 620,841 - MPMX19_03274 0.90 +0.1 620,841 - MPMX19_03274 0.90 +1.2 621,022 + -0.2 621,022 + -1.4 621,022 + -0.8 621,022 + -2.0 621,022 + -0.5 621,022 + -2.3 621,294 + MPMX19_03275 0.20 -1.4 621,294 + MPMX19_03275 0.20 -0.7 621,294 + MPMX19_03275 0.20 -0.5 621,294 + MPMX19_03275 0.20 -1.6 621,294 + MPMX19_03275 0.20 -1.1 621,294 + MPMX19_03275 0.20 +1.2 621,295 - MPMX19_03275 0.20 -0.4 621,295 - MPMX19_03275 0.20 -2.2 621,295 - MPMX19_03275 0.20 -0.8 621,295 - MPMX19_03275 0.20 +0.2 621,597 + MPMX19_03275 0.53 -1.1 621,597 + MPMX19_03275 0.53 +0.8 621,597 + MPMX19_03275 0.53 -2.3 621,598 - MPMX19_03275 0.53 -0.2 621,612 + MPMX19_03275 0.54 -0.9 621,612 + MPMX19_03275 0.54 -0.6 621,613 - MPMX19_03275 0.54 -0.1 621,613 - MPMX19_03275 0.54 -0.5 622,099 + -0.8 622,528 + MPMX19_03276 0.73 -0.4 622,528 + MPMX19_03276 0.73 -0.5 622,528 + MPMX19_03276 0.73 -1.2 622,528 + MPMX19_03276 0.73 -0.7 622,908 + MPMX19_03277 0.13 -0.5 622,908 + MPMX19_03277 0.13 -0.3 622,909 - MPMX19_03277 0.13 +0.4 622,909 - MPMX19_03277 0.13 +0.9 622,959 + MPMX19_03277 0.18 +0.8 622,959 + MPMX19_03277 0.18 -1.7 622,959 + MPMX19_03277 0.18 -2.5 622,960 - MPMX19_03277 0.18 +1.1 622,960 - MPMX19_03277 0.18 -0.8
Or see this region's nucleotide sequence