Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03186 and MPMX19_03187 are separated by 356 nucleotides
MPMX19_03186: MPMX19_03186 - hypothetical protein, at 481,271 to 482,917
_03186
MPMX19_03187: MPMX19_03187 - Magnesium-transporting ATPase, P-type 1, at 483,274 to 485,817
_03187
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1
2 at 480.295 kb on + strand at 480.295 kb on + strand at 480.296 kb on - strand at 480.296 kb on - strand at 480.296 kb on - strand at 480.296 kb on - strand at 480.296 kb on - strand at 480.296 kb on - strand at 480.312 kb on - strand at 480.312 kb on - strand at 480.312 kb on - strand at 480.321 kb on - strand at 481.156 kb on + strand at 481.156 kb on + strand at 481.156 kb on + strand at 481.156 kb on + strand at 481.166 kb on + strand at 481.166 kb on + strand at 481.166 kb on + strand at 481.166 kb on + strand at 481.208 kb on + strand at 481.209 kb on - strand at 481.214 kb on + strand at 481.214 kb on + strand at 481.214 kb on + strand at 481.404 kb on + strand at 481.404 kb on + strand at 481.404 kb on + strand at 481.404 kb on + strand at 481.404 kb on + strand at 481.404 kb on + strand at 481.404 kb on + strand at 481.405 kb on - strand at 481.405 kb on - strand at 481.405 kb on - strand at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.717 kb on - strand, within MPMX19_03186 at 481.718 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 481.816 kb on - strand, within MPMX19_03186 at 482.199 kb on - strand, within MPMX19_03186 at 482.199 kb on - strand, within MPMX19_03186 at 482.199 kb on - strand, within MPMX19_03186 at 482.199 kb on - strand, within MPMX19_03186 at 482.199 kb on - strand, within MPMX19_03186 at 482.199 kb on - strand, within MPMX19_03186 at 482.275 kb on - strand, within MPMX19_03186 at 482.841 kb on + strand at 482.841 kb on + strand at 482.841 kb on + strand at 482.841 kb on + strand at 482.841 kb on + strand at 482.842 kb on - strand at 482.842 kb on - strand at 482.842 kb on - strand at 482.842 kb on - strand at 482.842 kb on - strand at 483.053 kb on + strand at 483.069 kb on + strand at 483.070 kb on - strand at 483.088 kb on + strand at 483.088 kb on + strand at 483.206 kb on + strand at 483.243 kb on + strand at 483.243 kb on + strand at 483.244 kb on - strand at 483.244 kb on - strand at 483.244 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.254 kb on - strand at 483.330 kb on + strand at 483.330 kb on + strand at 483.330 kb on + strand at 483.331 kb on - strand at 483.331 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 480,295 + -0.8 480,295 + -1.5 480,296 - +0.4 480,296 - -2.3 480,296 - -0.7 480,296 - -1.2 480,296 - -0.6 480,296 - -0.1 480,312 - +0.2 480,312 - -0.8 480,312 - -0.3 480,321 - -0.7 481,156 + -0.9 481,156 + -0.8 481,156 + -1.1 481,156 + -0.5 481,166 + -1.8 481,166 + -0.1 481,166 + -2.0 481,166 + +0.5 481,208 + -1.1 481,209 - -0.8 481,214 + +0.4 481,214 + +1.8 481,214 + +0.7 481,404 + -0.2 481,404 + -0.1 481,404 + -0.1 481,404 + +1.2 481,404 + -0.2 481,404 + -0.2 481,404 + -0.7 481,405 - -1.7 481,405 - +0.3 481,405 - -0.7 481,717 - MPMX19_03186 0.27 +0.3 481,717 - MPMX19_03186 0.27 -0.5 481,717 - MPMX19_03186 0.27 +0.1 481,717 - MPMX19_03186 0.27 -0.1 481,717 - MPMX19_03186 0.27 -1.5 481,717 - MPMX19_03186 0.27 +0.2 481,717 - MPMX19_03186 0.27 -0.7 481,717 - MPMX19_03186 0.27 -0.8 481,717 - MPMX19_03186 0.27 -1.2 481,717 - MPMX19_03186 0.27 -0.5 481,717 - MPMX19_03186 0.27 +0.9 481,717 - MPMX19_03186 0.27 -1.1 481,717 - MPMX19_03186 0.27 -0.3 481,717 - MPMX19_03186 0.27 +2.1 481,717 - MPMX19_03186 0.27 -1.5 481,717 - MPMX19_03186 0.27 -1.1 481,718 - MPMX19_03186 0.27 +0.5 481,816 - MPMX19_03186 0.33 -1.5 481,816 - MPMX19_03186 0.33 -0.3 481,816 - MPMX19_03186 0.33 -0.4 481,816 - MPMX19_03186 0.33 +1.5 481,816 - MPMX19_03186 0.33 -1.7 481,816 - MPMX19_03186 0.33 +0.0 481,816 - MPMX19_03186 0.33 +0.1 481,816 - MPMX19_03186 0.33 +1.4 481,816 - MPMX19_03186 0.33 -1.7 481,816 - MPMX19_03186 0.33 -1.5 481,816 - MPMX19_03186 0.33 -1.0 481,816 - MPMX19_03186 0.33 -1.8 482,199 - MPMX19_03186 0.56 +1.0 482,199 - MPMX19_03186 0.56 -1.1 482,199 - MPMX19_03186 0.56 +0.3 482,199 - MPMX19_03186 0.56 -0.4 482,199 - MPMX19_03186 0.56 -2.5 482,199 - MPMX19_03186 0.56 -1.4 482,275 - MPMX19_03186 0.61 -1.2 482,841 + -0.4 482,841 + -0.5 482,841 + -0.1 482,841 + -1.0 482,841 + +0.2 482,842 - -0.5 482,842 - -1.5 482,842 - -1.7 482,842 - -0.7 482,842 - -0.5 483,053 + -2.1 483,069 + -0.1 483,070 - +0.0 483,088 + -0.1 483,088 + -0.9 483,206 + +1.0 483,243 + -2.3 483,243 + -0.8 483,244 - -0.2 483,244 - +0.2 483,244 - -0.5 483,254 - -1.0 483,254 - +0.1 483,254 - -0.4 483,254 - -0.7 483,254 - +0.3 483,254 - -1.3 483,330 + -2.2 483,330 + +0.3 483,330 + -1.5 483,331 - -1.1 483,331 - +0.4
Or see this region's nucleotide sequence