Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02968 and MPMX19_02969 are separated by 59 nucleotides MPMX19_02969 and MPMX19_02970 are separated by 142 nucleotides
MPMX19_02968: MPMX19_02968 - multidrug efflux RND transporter permease subunit OqxB28, at 227,351 to 230,539
_02968
MPMX19_02969: MPMX19_02969 - HTH-type transcriptional repressor PurR, at 230,599 to 231,687
_02969
MPMX19_02970: MPMX19_02970 - Sialic acid-binding periplasmic protein SiaP, at 231,830 to 232,870
_02970
Position (kb) 230
231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.629 kb on - strand, within MPMX19_02968 at 229.629 kb on - strand, within MPMX19_02968 at 229.629 kb on - strand, within MPMX19_02968 at 229.643 kb on + strand, within MPMX19_02968 at 229.643 kb on + strand, within MPMX19_02968 at 229.644 kb on - strand, within MPMX19_02968 at 229.676 kb on + strand, within MPMX19_02968 at 229.676 kb on + strand, within MPMX19_02968 at 229.677 kb on - strand, within MPMX19_02968 at 229.677 kb on - strand, within MPMX19_02968 at 229.803 kb on - strand, within MPMX19_02968 at 229.826 kb on + strand, within MPMX19_02968 at 229.826 kb on + strand, within MPMX19_02968 at 229.826 kb on + strand, within MPMX19_02968 at 229.826 kb on + strand, within MPMX19_02968 at 229.827 kb on - strand, within MPMX19_02968 at 229.964 kb on + strand, within MPMX19_02968 at 229.964 kb on + strand, within MPMX19_02968 at 229.965 kb on - strand, within MPMX19_02968 at 229.965 kb on - strand, within MPMX19_02968 at 229.965 kb on - strand, within MPMX19_02968 at 229.965 kb on - strand, within MPMX19_02968 at 229.965 kb on - strand, within MPMX19_02968 at 230.048 kb on + strand, within MPMX19_02968 at 230.048 kb on + strand, within MPMX19_02968 at 230.049 kb on - strand, within MPMX19_02968 at 230.049 kb on - strand, within MPMX19_02968 at 230.049 kb on - strand, within MPMX19_02968 at 230.049 kb on - strand, within MPMX19_02968 at 230.447 kb on + strand at 230.447 kb on + strand at 230.447 kb on + strand at 230.447 kb on + strand at 230.447 kb on + strand at 230.447 kb on + strand at 230.447 kb on + strand at 230.447 kb on + strand at 230.447 kb on + strand at 230.448 kb on - strand at 230.448 kb on - strand at 230.448 kb on - strand at 230.448 kb on - strand at 230.448 kb on - strand at 230.448 kb on - strand at 230.448 kb on - strand at 230.888 kb on + strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.939 kb on + strand, within MPMX19_02969 at 230.940 kb on - strand, within MPMX19_02969 at 230.940 kb on - strand, within MPMX19_02969 at 231.050 kb on + strand, within MPMX19_02969 at 231.050 kb on + strand, within MPMX19_02969 at 231.116 kb on + strand, within MPMX19_02969 at 231.117 kb on - strand, within MPMX19_02969 at 231.117 kb on - strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.159 kb on - strand, within MPMX19_02969 at 231.159 kb on - strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.486 kb on - strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.811 kb on - strand at 231.963 kb on - strand, within MPMX19_02970 at 232.030 kb on + strand, within MPMX19_02970 at 232.211 kb on + strand, within MPMX19_02970 at 232.212 kb on - strand, within MPMX19_02970 at 232.286 kb on + strand, within MPMX19_02970 at 232.286 kb on + strand, within MPMX19_02970 at 232.287 kb on - strand, within MPMX19_02970 at 232.287 kb on - strand, within MPMX19_02970 at 232.287 kb on - strand, within MPMX19_02970 at 232.463 kb on + strand, within MPMX19_02970 at 232.463 kb on + strand, within MPMX19_02970 at 232.463 kb on + strand, within MPMX19_02970 at 232.464 kb on - strand, within MPMX19_02970 at 232.464 kb on - strand, within MPMX19_02970 at 232.464 kb on - strand, within MPMX19_02970 at 232.535 kb on + strand, within MPMX19_02970
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 229,629 - MPMX19_02968 0.71 +0.1 229,629 - MPMX19_02968 0.71 -0.2 229,629 - MPMX19_02968 0.71 +2.1 229,643 + MPMX19_02968 0.72 -1.6 229,643 + MPMX19_02968 0.72 +0.8 229,644 - MPMX19_02968 0.72 -0.2 229,676 + MPMX19_02968 0.73 -0.0 229,676 + MPMX19_02968 0.73 -0.6 229,677 - MPMX19_02968 0.73 -1.4 229,677 - MPMX19_02968 0.73 -1.3 229,803 - MPMX19_02968 0.77 -0.8 229,826 + MPMX19_02968 0.78 -1.3 229,826 + MPMX19_02968 0.78 +0.4 229,826 + MPMX19_02968 0.78 -0.3 229,826 + MPMX19_02968 0.78 -0.8 229,827 - MPMX19_02968 0.78 -0.4 229,964 + MPMX19_02968 0.82 -1.0 229,964 + MPMX19_02968 0.82 -1.0 229,965 - MPMX19_02968 0.82 -0.3 229,965 - MPMX19_02968 0.82 -0.5 229,965 - MPMX19_02968 0.82 +0.2 229,965 - MPMX19_02968 0.82 -0.4 229,965 - MPMX19_02968 0.82 -0.5 230,048 + MPMX19_02968 0.85 -1.6 230,048 + MPMX19_02968 0.85 +0.1 230,049 - MPMX19_02968 0.85 +0.5 230,049 - MPMX19_02968 0.85 +0.0 230,049 - MPMX19_02968 0.85 +0.3 230,049 - MPMX19_02968 0.85 -1.8 230,447 + -0.0 230,447 + -1.5 230,447 + -1.0 230,447 + -1.1 230,447 + -0.3 230,447 + -0.0 230,447 + -0.5 230,447 + +0.1 230,447 + -1.6 230,448 - -0.5 230,448 - -1.8 230,448 - +1.5 230,448 - -0.0 230,448 - -0.0 230,448 - +2.1 230,448 - -1.2 230,888 + MPMX19_02969 0.27 -0.8 230,889 - MPMX19_02969 0.27 -0.4 230,889 - MPMX19_02969 0.27 -0.8 230,889 - MPMX19_02969 0.27 -2.2 230,889 - MPMX19_02969 0.27 +1.0 230,889 - MPMX19_02969 0.27 -1.5 230,939 + MPMX19_02969 0.31 -0.1 230,940 - MPMX19_02969 0.31 -0.9 230,940 - MPMX19_02969 0.31 +0.4 231,050 + MPMX19_02969 0.41 -0.2 231,050 + MPMX19_02969 0.41 +0.2 231,116 + MPMX19_02969 0.47 -2.2 231,117 - MPMX19_02969 0.48 -1.3 231,117 - MPMX19_02969 0.48 -0.5 231,158 + MPMX19_02969 0.51 -0.8 231,158 + MPMX19_02969 0.51 -0.9 231,158 + MPMX19_02969 0.51 -0.5 231,158 + MPMX19_02969 0.51 +0.0 231,158 + MPMX19_02969 0.51 -0.6 231,159 - MPMX19_02969 0.51 -0.5 231,159 - MPMX19_02969 0.51 +0.2 231,485 + MPMX19_02969 0.81 -1.0 231,485 + MPMX19_02969 0.81 -0.5 231,485 + MPMX19_02969 0.81 -0.0 231,485 + MPMX19_02969 0.81 -1.5 231,485 + MPMX19_02969 0.81 -0.8 231,485 + MPMX19_02969 0.81 -2.5 231,486 - MPMX19_02969 0.81 -0.5 231,506 + MPMX19_02969 0.83 -0.8 231,506 + MPMX19_02969 0.83 -2.3 231,506 + MPMX19_02969 0.83 +0.2 231,506 + MPMX19_02969 0.83 +0.4 231,506 + MPMX19_02969 0.83 -0.2 231,506 + MPMX19_02969 0.83 +0.4 231,506 + MPMX19_02969 0.83 -1.6 231,507 - MPMX19_02969 0.83 +1.2 231,507 - MPMX19_02969 0.83 -0.5 231,507 - MPMX19_02969 0.83 -1.8 231,507 - MPMX19_02969 0.83 -0.8 231,507 - MPMX19_02969 0.83 -0.9 231,507 - MPMX19_02969 0.83 -1.6 231,811 - -1.0 231,963 - MPMX19_02970 0.13 -0.0 232,030 + MPMX19_02970 0.19 +0.3 232,211 + MPMX19_02970 0.37 -0.7 232,212 - MPMX19_02970 0.37 +0.2 232,286 + MPMX19_02970 0.44 -1.0 232,286 + MPMX19_02970 0.44 +0.3 232,287 - MPMX19_02970 0.44 -0.5 232,287 - MPMX19_02970 0.44 +0.2 232,287 - MPMX19_02970 0.44 +0.1 232,463 + MPMX19_02970 0.61 +0.0 232,463 + MPMX19_02970 0.61 +0.2 232,463 + MPMX19_02970 0.61 +0.4 232,464 - MPMX19_02970 0.61 -0.9 232,464 - MPMX19_02970 0.61 -0.0 232,464 - MPMX19_02970 0.61 +1.5 232,535 + MPMX19_02970 0.68 -0.9
Or see this region's nucleotide sequence