Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02926

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02925 and MPMX19_02926 are separated by 147 nucleotidesMPMX19_02926 and MPMX19_02927 are separated by 315 nucleotides MPMX19_02925: MPMX19_02925 - Hydrazine synthase subunit beta, at 180,009 to 180,983 _02925 MPMX19_02926: MPMX19_02926 - hypothetical protein, at 181,131 to 181,514 _02926 MPMX19_02927: MPMX19_02927 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 181,830 to 182,357 _02927 Position (kb) 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.343 kb on - strand, within MPMX19_02925at 180.411 kb on - strand, within MPMX19_02925at 180.411 kb on - strand, within MPMX19_02925at 180.811 kb on - strand, within MPMX19_02925at 180.811 kb on - strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 181.151 kb on - strandat 181.512 kb on + strandat 181.573 kb on + strandat 181.573 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.610 kb on + strandat 181.610 kb on + strandat 181.611 kb on - strandat 181.611 kb on - strandat 181.611 kb on - strandat 181.648 kb on - strandat 181.648 kb on - strandat 181.696 kb on + strandat 181.697 kb on - strandat 181.697 kb on - strandat 181.730 kb on + strandat 181.730 kb on + strandat 181.730 kb on + strandat 181.731 kb on - strandat 181.731 kb on - strandat 182.247 kb on + strand, within MPMX19_02927at 182.247 kb on + strand, within MPMX19_02927at 182.247 kb on + strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.253 kb on + strand, within MPMX19_02927at 182.253 kb on + strand, within MPMX19_02927at 182.254 kb on - strand, within MPMX19_02927at 182.445 kb on - strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.477 kb on - strandat 182.477 kb on - strandat 182.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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180,216 + MPMX19_02925 0.21 -1.0
180,216 + MPMX19_02925 0.21 +0.1
180,216 + MPMX19_02925 0.21 +1.0
180,216 + MPMX19_02925 0.21 -2.1
180,216 + MPMX19_02925 0.21 -1.4
180,216 + MPMX19_02925 0.21 -0.2
180,216 + MPMX19_02925 0.21 +0.0
180,216 + MPMX19_02925 0.21 -1.6
180,216 + MPMX19_02925 0.21 -1.8
180,216 + MPMX19_02925 0.21 +0.2
180,216 + MPMX19_02925 0.21 -0.7
180,217 - MPMX19_02925 0.21 -0.3
180,217 - MPMX19_02925 0.21 -1.9
180,217 - MPMX19_02925 0.21 +0.0
180,217 - MPMX19_02925 0.21 -1.3
180,217 - MPMX19_02925 0.21 -1.8
180,217 - MPMX19_02925 0.21 -0.0
180,217 - MPMX19_02925 0.21 +0.1
180,217 - MPMX19_02925 0.21 +0.3
180,217 - MPMX19_02925 0.21 +0.7
180,217 - MPMX19_02925 0.21 +0.2
180,217 - MPMX19_02925 0.21 -1.2
180,217 - MPMX19_02925 0.21 -1.1
180,342 + MPMX19_02925 0.34 -0.4
180,342 + MPMX19_02925 0.34 -1.3
180,342 + MPMX19_02925 0.34 +0.6
180,343 - MPMX19_02925 0.34 -0.4
180,411 - MPMX19_02925 0.41 +0.2
180,411 - MPMX19_02925 0.41 -1.6
180,811 - MPMX19_02925 0.82 -1.3
180,811 - MPMX19_02925 0.82 -1.0
180,870 + MPMX19_02925 0.88 -1.4
180,870 + MPMX19_02925 0.88 -1.4
180,870 + MPMX19_02925 0.88 -0.9
180,870 + MPMX19_02925 0.88 -1.0
180,870 + MPMX19_02925 0.88 -0.6
180,871 - MPMX19_02925 0.88 -1.4
180,871 - MPMX19_02925 0.88 -0.8
180,871 - MPMX19_02925 0.88 -0.2
181,151 - -1.1
181,512 + +0.1
181,573 + -1.0
181,573 + -3.1
181,608 + -1.4
181,608 + -1.3
181,608 + +1.4
181,608 + +1.2
181,608 + -0.4
181,608 + -0.4
181,608 + -1.8
181,609 - +0.8
181,609 - -0.8
181,609 - -0.8
181,609 - +0.3
181,609 - -1.3
181,610 + +0.8
181,610 + -0.3
181,611 - -0.9
181,611 - -1.0
181,611 - -0.4
181,648 - +0.1
181,648 - -0.7
181,696 + -1.0
181,697 - +0.7
181,697 - -2.5
181,730 + -2.7
181,730 + -2.1
181,730 + +0.0
181,731 - -0.5
181,731 - -1.0
182,247 + MPMX19_02927 0.79 -1.9
182,247 + MPMX19_02927 0.79 -0.7
182,247 + MPMX19_02927 0.79 -1.6
182,248 - MPMX19_02927 0.79 -1.3
182,248 - MPMX19_02927 0.79 -1.0
182,248 - MPMX19_02927 0.79 +1.6
182,248 - MPMX19_02927 0.79 -1.6
182,253 + MPMX19_02927 0.80 +1.0
182,253 + MPMX19_02927 0.80 +0.2
182,254 - MPMX19_02927 0.80 -0.8
182,445 - -1.0
182,476 + -0.4
182,476 + -1.3
182,476 + +0.1
182,476 + +0.7
182,477 - -1.6
182,477 - -1.2
182,477 - -0.0

Or see this region's nucleotide sequence