Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02291

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
2,411,972	+		MPMX19_02290	0.34	-0.3
2,411,972	+		MPMX19_02290	0.34	-0.3
2,411,972	+		MPMX19_02290	0.34	-0.5
2,411,972	+		MPMX19_02290	0.34	-1.5
2,411,972	+		MPMX19_02290	0.34	+0.3
2,411,972	+		MPMX19_02290	0.34	+0.1
2,411,972	+		MPMX19_02290	0.34	-0.0
2,411,972	+		MPMX19_02290	0.34	-1.1
2,411,972	+		MPMX19_02290	0.34	-0.6
2,411,973	-		MPMX19_02290	0.34	+1.2
2,411,973	-		MPMX19_02290	0.34	-0.6
2,411,973	-		MPMX19_02290	0.34	-0.8
2,411,973	-		MPMX19_02290	0.34	+0.1
2,411,973	-		MPMX19_02290	0.34	-0.5
2,411,973	-		MPMX19_02290	0.34	+0.6
2,411,973	-		MPMX19_02290	0.34	-1.6
2,411,973	-		MPMX19_02290	0.34	+0.6
2,411,973	-		MPMX19_02290	0.34	-0.2
2,411,973	-		MPMX19_02290	0.34	-1.3
2,411,992	+		MPMX19_02290	0.35	+1.1
2,411,992	+		MPMX19_02290	0.35	-1.5
2,411,992	+		MPMX19_02290	0.35	-0.5
2,411,992	+		MPMX19_02290	0.35	+1.3
2,411,992	+		MPMX19_02290	0.35	+0.8
2,411,992	+		MPMX19_02290	0.35	-1.0
2,411,992	+		MPMX19_02290	0.35	-1.0
2,411,993	-		MPMX19_02290	0.35	+0.4
2,411,993	-		MPMX19_02290	0.35	-0.9
2,411,993	-		MPMX19_02290	0.35	-0.8
2,411,993	-		MPMX19_02290	0.35	+0.3
2,411,993	-		MPMX19_02290	0.35	-1.6
2,411,993	-		MPMX19_02290	0.35	-0.9
2,411,993	-		MPMX19_02290	0.35	-0.7
2,412,133	+		MPMX19_02290	0.46	-0.8
2,412,133	+		MPMX19_02290	0.46	+0.1
2,412,133	+		MPMX19_02290	0.46	-0.8
2,412,133	+		MPMX19_02290	0.46	-0.3
2,412,133	+		MPMX19_02290	0.46	-1.1
2,412,133	+		MPMX19_02290	0.46	+1.4
2,412,134	-		MPMX19_02290	0.46	+0.3
2,412,134	-		MPMX19_02290	0.46	-2.1
2,412,134	-		MPMX19_02290	0.46	+0.1
2,412,365	+		MPMX19_02290	0.65	-0.2
2,412,365	+		MPMX19_02290	0.65	-0.9
2,412,365	+		MPMX19_02290	0.65	+0.9
2,412,365	+		MPMX19_02290	0.65	-0.6
2,412,366	-		MPMX19_02290	0.65	+1.0
2,412,366	-		MPMX19_02290	0.65	-1.3
2,412,366	-		MPMX19_02290	0.65	-1.5
2,412,374	+		MPMX19_02290	0.65	+0.4
2,412,374	+		MPMX19_02290	0.65	-0.5
2,412,374	+		MPMX19_02290	0.65	-0.3
2,412,374	+		MPMX19_02290	0.65	-2.8
2,412,374	+		MPMX19_02290	0.65	+0.2
2,412,375	-		MPMX19_02290	0.65	+1.7
2,412,375	-		MPMX19_02290	0.65	+1.6
2,412,375	-		MPMX19_02290	0.65	-0.3
2,412,375	-		MPMX19_02290	0.65	+0.0
2,412,375	-		MPMX19_02290	0.65	-0.3
2,412,401	+		MPMX19_02290	0.68	+0.1
2,412,401	+		MPMX19_02290	0.68	-0.4
2,412,431	+		MPMX19_02290	0.70	-1.6
2,412,431	+		MPMX19_02290	0.70	+0.2
2,412,431	+		MPMX19_02290	0.70	-0.3
2,412,431	+		MPMX19_02290	0.70	-0.9
2,412,431	+		MPMX19_02290	0.70	-0.9
2,412,431	+		MPMX19_02290	0.70	-0.4
2,412,431	+		MPMX19_02290	0.70	-0.2
2,412,431	+		MPMX19_02290	0.70	+0.1
2,412,432	-		MPMX19_02290	0.70	-0.8
2,412,432	-		MPMX19_02290	0.70	-0.3
2,412,432	-		MPMX19_02290	0.70	+0.9
2,412,432	-		MPMX19_02290	0.70	-1.8
2,412,432	-		MPMX19_02290	0.70	-0.4
2,412,443	+		MPMX19_02290	0.71	-0.5
2,412,443	+		MPMX19_02290	0.71	-2.0
2,412,443	+		MPMX19_02290	0.71	+0.8
2,412,443	+		MPMX19_02290	0.71	-0.4
2,412,443	+		MPMX19_02290	0.71	+0.3
2,412,443	+		MPMX19_02290	0.71	+0.9
2,412,443	+		MPMX19_02290	0.71	-0.6
2,412,444	-		MPMX19_02290	0.71	-1.6
2,412,444	-		MPMX19_02290	0.71	+1.2
2,412,444	-		MPMX19_02290	0.71	-0.1
2,412,444	-		MPMX19_02290	0.71	+0.2
2,412,444	-		MPMX19_02290	0.71	-2.0
2,412,444	-		MPMX19_02290	0.71	-1.2
2,412,444	-		MPMX19_02290	0.71	+0.5
2,412,444	-		MPMX19_02290	0.71	+0.0
2,412,444	-		MPMX19_02290	0.71	+1.2
2,412,444	-		MPMX19_02290	0.71	+0.9
2,412,444	-		MPMX19_02290	0.71	+0.1
2,412,444	-		MPMX19_02290	0.71	-1.1
2,412,444	-		MPMX19_02290	0.71	-0.5
2,412,501	+		MPMX19_02290	0.75	-0.2
2,412,501	+		MPMX19_02290	0.75	-0.7
2,412,501	+		MPMX19_02290	0.75	-2.4
2,412,501	+		MPMX19_02290	0.75	+0.2
2,412,501	+		MPMX19_02290	0.75	-0.5
2,412,502	-		MPMX19_02290	0.76	-0.8
2,412,502	-		MPMX19_02290	0.76	+0.6
2,412,502	-		MPMX19_02290	0.76	-1.1
2,412,519	+		MPMX19_02290	0.77	-1.8
2,412,520	-		MPMX19_02290	0.77	-0.9
2,412,583	+		MPMX19_02290	0.82	+0.7
2,412,583	+		MPMX19_02290	0.82	+0.1
2,412,583	+		MPMX19_02290	0.82	-1.1
2,412,584	-		MPMX19_02290	0.82	-1.0
2,412,584	-		MPMX19_02290	0.82	-1.6
2,412,584	-		MPMX19_02290	0.82	-0.1
2,412,602	+		MPMX19_02290	0.83	+0.6
2,412,602	+		MPMX19_02290	0.83	+0.3
2,412,603	-		MPMX19_02290	0.84	+0.8
2,412,626	+		MPMX19_02290	0.85	-2.5
2,412,626	+		MPMX19_02290	0.85	-1.2
2,412,626	+		MPMX19_02290	0.85	-0.5
2,412,626	+		MPMX19_02290	0.85	-1.0
2,412,627	-		MPMX19_02290	0.85	-0.3
2,412,627	-		MPMX19_02290	0.85	-1.0
2,412,666	+		MPMX19_02290	0.89	+0.7
2,412,666	+		MPMX19_02290	0.89	-0.2
2,412,666	+		MPMX19_02290	0.89	+0.7
2,412,666	+		MPMX19_02290	0.89	-1.5
2,412,667	-		MPMX19_02290	0.89	+0.1
2,412,667	-		MPMX19_02290	0.89	-0.1
2,412,667	-		MPMX19_02290	0.89	-0.6
2,412,704	+				-1.1
2,412,704	+				+1.2
2,412,704	+				-0.1
2,412,705	-				-1.6
2,412,705	-				-0.5
2,412,792	+				+0.7
2,412,792	+				+0.7
2,412,792	+				+0.7
2,412,792	+				-1.2
2,412,793	-				-0.0
2,412,793	-				-2.0
2,412,793	-				-1.0
2,412,793	-				+1.1
2,412,797	+				-0.4
2,412,832	-				-1.8
2,412,834	+				-0.9
2,412,834	+				-1.2
2,412,834	+				-1.2
2,412,835	-				-0.5
2,412,838	+				+0.2
2,412,838	+				-0.4
2,412,838	+				+0.5
2,412,838	+				+0.1
2,412,838	+				-0.1
2,412,838	+				-0.4
2,412,838	+				-0.3
2,412,838	+				-1.6
2,412,839	-				-1.6
2,412,839	-				-0.5
2,412,839	-				-0.2
2,412,839	-				+0.4
2,412,839	-				-0.9
2,412,839	-				-1.6
2,412,839	-				+0.2
2,412,839	-				-1.1
2,412,839	-				-0.6
2,412,839	-				+0.6
2,412,839	-				-2.2
2,412,843	+				-2.1
2,412,843	+				-1.8
2,412,843	+				+1.4
2,412,843	+				+1.0
2,412,844	-				-0.3
2,412,844	-				-1.8
2,412,848	+				-1.3
2,412,849	-				-1.0
2,412,904	+				-0.0
2,412,904	+				-0.0
2,412,905	-				-0.7
2,412,905	-				-0.4
2,412,905	-				-0.3
2,412,906	+				+0.9
2,412,919	+				-0.1
2,412,920	-				-1.5
2,412,923	+				-0.9
2,412,923	+				-0.1
2,412,924	-				-1.8
2,412,924	-				-3.1
2,412,924	-				-1.9
2,412,943	-				-0.1
2,413,039	+		MPMX19_02291	0.37	-1.2
2,413,039	+		MPMX19_02291	0.37	-1.1
2,413,039	+		MPMX19_02291	0.37	-0.8
2,413,039	+		MPMX19_02291	0.37	-1.3
2,413,039	+		MPMX19_02291	0.37	-0.1
2,413,040	-		MPMX19_02291	0.37	-2.1
2,413,040	-		MPMX19_02291	0.37	-1.0
2,413,040	-		MPMX19_02291	0.37	-0.7
2,413,040	-		MPMX19_02291	0.37	-0.9
2,413,040	-		MPMX19_02291	0.37	+0.6
2,413,040	-		MPMX19_02291	0.37	-1.1
2,413,040	-		MPMX19_02291	0.37	-0.9
2,413,040	-		MPMX19_02291	0.37	-0.9
2,413,054	+		MPMX19_02291	0.41	+0.7
2,413,054	+		MPMX19_02291	0.41	+1.7
2,413,054	+		MPMX19_02291	0.41	-0.3
2,413,055	-		MPMX19_02291	0.42	-0.5
2,413,055	-		MPMX19_02291	0.42	-0.5
2,413,102	+		MPMX19_02291	0.56	-0.8
2,413,102	+		MPMX19_02291	0.56	-1.6
2,413,102	+		MPMX19_02291	0.56	-1.1
2,413,102	+		MPMX19_02291	0.56	+0.1
2,413,102	+		MPMX19_02291	0.56	-1.2
2,413,102	+		MPMX19_02291	0.56	-0.8
2,413,102	+		MPMX19_02291	0.56	+0.7
2,413,102	+		MPMX19_02291	0.56	-1.4
2,413,103	-		MPMX19_02291	0.56	+0.6
2,413,103	-		MPMX19_02291	0.56	-0.2
2,413,103	-		MPMX19_02291	0.56	+0.5
2,413,103	-		MPMX19_02291	0.56	-2.7
2,413,103	-		MPMX19_02291	0.56	-1.0
2,413,103	-		MPMX19_02291	0.56	-1.9
2,413,103	-		MPMX19_02291	0.56	+0.5
2,413,103	-		MPMX19_02291	0.56	-0.9
2,413,103	-		MPMX19_02291	0.56	-1.1
2,413,103	-		MPMX19_02291	0.56	-0.4
2,413,103	-		MPMX19_02291	0.56	-0.2
2,413,132	+		MPMX19_02291	0.65	+0.7
2,413,132	+		MPMX19_02291	0.65	-1.2
2,413,132	+		MPMX19_02291	0.65	+0.0
2,413,132	+		MPMX19_02291	0.65	-2.5
2,413,132	+		MPMX19_02291	0.65	-1.3
2,413,132	+		MPMX19_02291	0.65	-1.1
2,413,132	+		MPMX19_02291	0.65	+1.1
2,413,132	+		MPMX19_02291	0.65	-0.5
2,413,132	+		MPMX19_02291	0.65	+1.2
2,413,132	+		MPMX19_02291	0.65	-1.1
2,413,132	+		MPMX19_02291	0.65	-0.9
2,413,132	+		MPMX19_02291	0.65	-1.3
2,413,133	-		MPMX19_02291	0.65	-1.5
2,413,133	-		MPMX19_02291	0.65	-1.4
2,413,133	-		MPMX19_02291	0.65	-1.1
2,413,133	-		MPMX19_02291	0.65	+0.0
2,413,133	-		MPMX19_02291	0.65	+0.7
2,413,145	-		MPMX19_02291	0.69	+1.7
2,413,228	+				-0.9
2,413,229	-				+0.1
2,413,299	+				-0.6
2,413,299	+				-0.7
2,413,300	-				-1.8
2,413,300	-				+0.2
2,413,300	-				-0.2
2,413,300	-				-1.2
2,413,300	-				+0.1
2,413,300	-				-2.1
2,413,300	-				-2.7
2,413,300	-				-1.8
2,413,300	-				-1.1
2,413,402	+				+0.7
2,413,402	+				-0.1
2,413,402	+				-0.0
2,413,402	+				-0.2
2,413,402	+				-0.2
2,413,402	+				-1.3
2,413,402	+				-2.0
2,413,403	-				-0.3
2,413,403	-				-0.2
2,413,403	-				-0.2
2,413,408	+				+0.7
2,413,408	+				+0.6
2,413,408	+				+0.0
2,413,408	+				-0.5
2,413,409	-				-0.6
2,413,411	+				-0.3
2,413,411	+				-1.8
2,413,411	+				-1.1
2,413,411	+				+0.1
2,413,411	+				-1.5
2,413,411	+				+0.1
2,413,411	+				-0.3
2,413,411	+				+0.4
2,413,411	+				-0.5
2,413,411	+				-0.3
2,413,411	+				-0.6
2,413,411	+				-0.4
2,413,411	+				-1.4
2,413,411	+				-1.5
2,413,412	-				-1.5
2,413,412	-				-1.2
2,413,412	-				-0.9
2,413,412	-				+0.2
2,413,412	-				+0.7
2,413,412	-				-0.9
2,413,412	-				-1.3
2,413,412	-				-0.3
2,413,412	-				-1.3
2,413,412	-				-0.2
2,413,412	-				-0.5
2,413,412	-				-1.0
2,413,412	-				+0.1
2,413,412	-				+0.5
2,413,412	-				-0.1
2,413,412	-				-1.3
2,413,412	-				+1.7
2,413,412	-				+1.0
2,413,412	-				+0.4
2,413,428	+				+0.2
2,413,429	-				-0.1
2,413,432	+				-1.1
2,413,432	+				-0.7
2,413,432	+				-0.8
2,413,432	+				-0.3
2,413,432	+				-0.4
2,413,432	+				+0.2
2,413,432	+				+0.1
2,413,432	+				-0.7
2,413,432	+				+1.3
2,413,432	+				+0.7
2,413,432	+				+0.1
2,413,432	+				+1.5
2,413,432	+				+1.4
2,413,432	+				+0.1
2,413,432	+				+0.3
2,413,432	+				-0.7
2,413,433	-				-1.3
2,413,433	-				+0.1
2,413,433	-				+0.1
2,413,433	-				-2.8
2,413,433	-				-1.1
2,413,433	-				-0.5
2,413,433	-				+0.5
2,413,433	-				+0.4
2,413,433	-				+1.0
2,413,433	-				+0.2
2,413,433	-				-1.6
2,413,433	-				+0.6
2,413,433	-				-0.1
2,413,433	-				-0.2
2,413,433	-				-2.3
2,413,433	-				-1.3
2,413,433	-				-0.8
2,413,433	-				-1.5
2,413,433	-				-0.6
2,413,433	-				+1.0
2,413,433	-				-0.3
2,413,433	-				-1.2
2,413,433	-				-1.8
2,413,433	-				-0.6
2,413,433	-				-0.1
2,413,433	-				-1.5
2,413,433	-				-0.7
2,413,433	-				-1.0
2,413,433	-				-0.5
2,413,445	+				+0.1
2,413,446	-				-1.0
2,413,446	-				-2.1
2,413,656	-		MPMX19_02292	0.79	-0.1
2,413,676	+		MPMX19_02292	0.89	-0.0
2,413,676	+		MPMX19_02292	0.89	+0.2
2,413,676	+		MPMX19_02292	0.89	-0.7
2,413,676	+		MPMX19_02292	0.89	-0.5
2,413,676	+		MPMX19_02292	0.89	+1.2
2,413,676	+		MPMX19_02292	0.89	-0.3
2,413,676	+		MPMX19_02292	0.89	-1.0
2,413,676	+		MPMX19_02292	0.89	-1.5
2,413,676	+		MPMX19_02292	0.89	-0.1
2,413,676	+		MPMX19_02292	0.89	-1.1
2,413,676	+		MPMX19_02292	0.89	-1.4
2,413,676	+		MPMX19_02292	0.89	+0.1
2,413,676	+		MPMX19_02292	0.89	-0.3
2,413,676	+		MPMX19_02292	0.89	+0.1
2,413,676	+		MPMX19_02292	0.89	-1.9
2,413,676	+		MPMX19_02292	0.89	-0.5
2,413,676	+		MPMX19_02292	0.89	-1.6
2,413,676	+		MPMX19_02292	0.89	-0.4
2,413,676	+		MPMX19_02292	0.89	-0.2
2,413,676	+		MPMX19_02292	0.89	+0.7
2,413,676	+		MPMX19_02292	0.89	+1.0
2,413,676	+		MPMX19_02292	0.89	-0.2
2,413,677	-				-0.2
2,413,677	-				-1.1
2,413,677	-				-0.6
2,413,677	-				+1.7
2,413,677	-				-0.0
2,413,677	-				-1.3
2,413,677	-				-1.3
2,413,677	-				+0.6
2,413,677	-				-0.5
2,413,677	-				-0.4
2,413,677	-				-0.7
2,413,677	-				-0.4
2,413,677	-				-0.3
2,413,677	-				+0.3
2,413,677	-				-0.4
2,413,677	-				-0.5
2,413,677	-				-0.9
2,413,677	-				+0.3
2,413,677	-				-2.1
2,413,677	-				-1.4
2,413,677	-				-0.8
2,413,946	+		MPMX19_02293	0.84	-0.8
2,413,946	+		MPMX19_02293	0.84	-0.9
2,413,946	+		MPMX19_02293	0.84	-0.2
2,413,946	+		MPMX19_02293	0.84	-2.2
2,413,946	+		MPMX19_02293	0.84	+1.1
2,413,946	+		MPMX19_02293	0.84	+0.2
2,413,946	+		MPMX19_02293	0.84	-1.0
2,413,946	+		MPMX19_02293	0.84	-0.5
2,413,946	+		MPMX19_02293	0.84	+0.7
2,413,947	-		MPMX19_02293	0.85	-0.2
2,413,947	-		MPMX19_02293	0.85	+1.2
2,413,947	-		MPMX19_02293	0.85	-0.8
2,413,947	-		MPMX19_02293	0.85	-0.3
2,413,947	-		MPMX19_02293	0.85	+0.1
2,413,947	-		MPMX19_02293	0.85	-0.4
2,413,947	-		MPMX19_02293	0.85	-0.4
2,413,947	-		MPMX19_02293	0.85	-0.4
2,413,955	+		MPMX19_02293	0.88	-0.6
2,413,955	+		MPMX19_02293	0.88	-0.6
2,413,955	+		MPMX19_02293	0.88	-1.0
2,413,955	+		MPMX19_02293	0.88	+0.2
2,413,955	+		MPMX19_02293	0.88	-0.0
2,413,955	+		MPMX19_02293	0.88	-2.1
2,413,955	+		MPMX19_02293	0.88	-1.9
2,413,955	+		MPMX19_02293	0.88	-0.8
2,413,956	-		MPMX19_02293	0.88	-0.0
2,413,956	-		MPMX19_02293	0.88	-1.6
2,413,956	-		MPMX19_02293	0.88	-0.4
2,413,956	-		MPMX19_02293	0.88	-0.3
2,413,956	-		MPMX19_02293	0.88	-0.0
2,413,956	-		MPMX19_02293	0.88	-0.3
2,413,956	-		MPMX19_02293	0.88	+0.5
2,413,956	-		MPMX19_02293	0.88	-1.8
2,413,956	-		MPMX19_02293	0.88	-1.5
2,413,956	-		MPMX19_02293	0.88	-0.6
2,413,956	-		MPMX19_02293	0.88	+0.6
2,414,091	+				+0.6
2,414,091	+				-1.1
2,414,091	+				-0.4
2,414,092	-				+0.0
2,414,092	-				-0.4