Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01858

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01857 and MPMX19_01858 are separated by 267 nucleotidesMPMX19_01858 and MPMX19_01859 overlap by 4 nucleotides MPMX19_01857: MPMX19_01857 - hypothetical protein, at 1,934,460 to 1,935,614 _01857 MPMX19_01858: MPMX19_01858 - Alkaline phosphatase synthesis transcriptional regulatory protein PhoP, at 1,935,882 to 1,936,280 _01858 MPMX19_01859: MPMX19_01859 - 3'-5' exonuclease DinG, at 1,936,277 to 1,938,502 _01859 Position (kb) 1935 1936 1937Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.384 kb on + strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.385 kb on - strand, within MPMX19_01857at 1935.391 kb on + strand, within MPMX19_01857at 1935.391 kb on + strand, within MPMX19_01857at 1935.392 kb on - strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.468 kb on + strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.469 kb on - strand, within MPMX19_01857at 1935.794 kb on - strandat 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.016 kb on + strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.017 kb on - strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.185 kb on + strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.186 kb on - strand, within MPMX19_01858at 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.463 kb on + strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.464 kb on - strandat 1936.529 kb on + strand, within MPMX19_01859at 1936.530 kb on - strand, within MPMX19_01859at 1936.530 kb on - strand, within MPMX19_01859at 1936.628 kb on + strand, within MPMX19_01859at 1936.628 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.823 kb on + strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1936.824 kb on - strand, within MPMX19_01859at 1937.096 kb on + strand, within MPMX19_01859at 1937.096 kb on + strand, within MPMX19_01859at 1937.096 kb on + strand, within MPMX19_01859at 1937.096 kb on + strand, within MPMX19_01859at 1937.096 kb on + strand, within MPMX19_01859at 1937.097 kb on - strand, within MPMX19_01859at 1937.097 kb on - strand, within MPMX19_01859at 1937.225 kb on + strand, within MPMX19_01859at 1937.225 kb on + strand, within MPMX19_01859at 1937.225 kb on + strand, within MPMX19_01859at 1937.225 kb on + strand, within MPMX19_01859at 1937.225 kb on + strand, within MPMX19_01859at 1937.225 kb on + strand, within MPMX19_01859at 1937.225 kb on + strand, within MPMX19_01859at 1937.226 kb on - strand, within MPMX19_01859at 1937.226 kb on - strand, within MPMX19_01859at 1937.226 kb on - strand, within MPMX19_01859at 1937.226 kb on - strand, within MPMX19_01859at 1937.226 kb on - strand, within MPMX19_01859at 1937.226 kb on - strand, within MPMX19_01859

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
remove
1,935,384 + MPMX19_01857 0.80 -0.0
1,935,384 + MPMX19_01857 0.80 +0.1
1,935,384 + MPMX19_01857 0.80 +0.3
1,935,384 + MPMX19_01857 0.80 -0.7
1,935,384 + MPMX19_01857 0.80 -0.2
1,935,384 + MPMX19_01857 0.80 +0.5
1,935,385 - MPMX19_01857 0.80 -0.0
1,935,385 - MPMX19_01857 0.80 +0.1
1,935,385 - MPMX19_01857 0.80 -0.8
1,935,385 - MPMX19_01857 0.80 +1.1
1,935,385 - MPMX19_01857 0.80 -1.3
1,935,385 - MPMX19_01857 0.80 -0.8
1,935,391 + MPMX19_01857 0.81 -1.3
1,935,391 + MPMX19_01857 0.81 -1.0
1,935,392 - MPMX19_01857 0.81 -0.6
1,935,468 + MPMX19_01857 0.87 -0.0
1,935,468 + MPMX19_01857 0.87 -0.7
1,935,468 + MPMX19_01857 0.87 +0.4
1,935,468 + MPMX19_01857 0.87 +0.2
1,935,468 + MPMX19_01857 0.87 -0.6
1,935,468 + MPMX19_01857 0.87 -2.2
1,935,468 + MPMX19_01857 0.87 +0.3
1,935,468 + MPMX19_01857 0.87 +0.9
1,935,468 + MPMX19_01857 0.87 -0.4
1,935,468 + MPMX19_01857 0.87 -0.1
1,935,468 + MPMX19_01857 0.87 -0.0
1,935,469 - MPMX19_01857 0.87 -0.3
1,935,469 - MPMX19_01857 0.87 -0.6
1,935,469 - MPMX19_01857 0.87 -0.3
1,935,469 - MPMX19_01857 0.87 -0.6
1,935,469 - MPMX19_01857 0.87 -1.6
1,935,469 - MPMX19_01857 0.87 +0.8
1,935,469 - MPMX19_01857 0.87 +0.7
1,935,469 - MPMX19_01857 0.87 -0.2
1,935,469 - MPMX19_01857 0.87 -2.0
1,935,469 - MPMX19_01857 0.87 -0.3
1,935,794 - +0.1
1,936,016 + MPMX19_01858 0.34 -0.8
1,936,016 + MPMX19_01858 0.34 +1.0
1,936,016 + MPMX19_01858 0.34 +0.1
1,936,016 + MPMX19_01858 0.34 +0.7
1,936,016 + MPMX19_01858 0.34 -0.2
1,936,016 + MPMX19_01858 0.34 -0.4
1,936,016 + MPMX19_01858 0.34 +1.1
1,936,016 + MPMX19_01858 0.34 -0.6
1,936,016 + MPMX19_01858 0.34 -1.0
1,936,017 - MPMX19_01858 0.34 -0.6
1,936,017 - MPMX19_01858 0.34 -3.0
1,936,017 - MPMX19_01858 0.34 +1.0
1,936,017 - MPMX19_01858 0.34 +0.8
1,936,017 - MPMX19_01858 0.34 -0.7
1,936,185 + MPMX19_01858 0.76 +1.2
1,936,185 + MPMX19_01858 0.76 -1.5
1,936,185 + MPMX19_01858 0.76 -0.6
1,936,185 + MPMX19_01858 0.76 +1.1
1,936,185 + MPMX19_01858 0.76 -0.0
1,936,185 + MPMX19_01858 0.76 -0.3
1,936,185 + MPMX19_01858 0.76 +0.3
1,936,185 + MPMX19_01858 0.76 -1.0
1,936,185 + MPMX19_01858 0.76 +0.4
1,936,185 + MPMX19_01858 0.76 +0.6
1,936,185 + MPMX19_01858 0.76 -0.0
1,936,185 + MPMX19_01858 0.76 +0.2
1,936,185 + MPMX19_01858 0.76 +0.0
1,936,185 + MPMX19_01858 0.76 +0.1
1,936,185 + MPMX19_01858 0.76 +0.2
1,936,186 - MPMX19_01858 0.76 +1.5
1,936,186 - MPMX19_01858 0.76 -1.5
1,936,186 - MPMX19_01858 0.76 -0.5
1,936,186 - MPMX19_01858 0.76 +0.4
1,936,186 - MPMX19_01858 0.76 -1.5
1,936,186 - MPMX19_01858 0.76 +0.5
1,936,186 - MPMX19_01858 0.76 +0.3
1,936,186 - MPMX19_01858 0.76 +0.5
1,936,186 - MPMX19_01858 0.76 +1.1
1,936,186 - MPMX19_01858 0.76 +0.3
1,936,186 - MPMX19_01858 0.76 -1.9
1,936,186 - MPMX19_01858 0.76 -0.3
1,936,186 - MPMX19_01858 0.76 +0.8
1,936,186 - MPMX19_01858 0.76 -0.6
1,936,186 - MPMX19_01858 0.76 -0.0
1,936,463 + -0.0
1,936,463 + -1.6
1,936,463 + -0.8
1,936,463 + +0.2
1,936,463 + +0.9
1,936,463 + +0.1
1,936,463 + -0.3
1,936,463 + +0.2
1,936,463 + +0.3
1,936,463 + +0.7
1,936,463 + -1.6
1,936,463 + -0.5
1,936,463 + -0.8
1,936,463 + +0.1
1,936,463 + -0.3
1,936,463 + -0.8
1,936,463 + +0.1
1,936,463 + -0.2
1,936,463 + -0.0
1,936,463 + +1.5
1,936,464 - -1.3
1,936,464 - -0.5
1,936,464 - -0.6
1,936,464 - +0.1
1,936,464 - +0.7
1,936,464 - -0.9
1,936,464 - -0.0
1,936,464 - +0.5
1,936,464 - -0.8
1,936,464 - +0.7
1,936,464 - +0.0
1,936,464 - +2.4
1,936,464 - -1.5
1,936,529 + MPMX19_01859 0.11 -0.8
1,936,530 - MPMX19_01859 0.11 -0.0
1,936,530 - MPMX19_01859 0.11 +0.9
1,936,628 + MPMX19_01859 0.16 -1.3
1,936,628 + MPMX19_01859 0.16 +0.5
1,936,823 + MPMX19_01859 0.25 -2.7
1,936,823 + MPMX19_01859 0.25 -0.9
1,936,823 + MPMX19_01859 0.25 +0.5
1,936,823 + MPMX19_01859 0.25 -1.0
1,936,823 + MPMX19_01859 0.25 -0.8
1,936,823 + MPMX19_01859 0.25 -1.3
1,936,823 + MPMX19_01859 0.25 -0.5
1,936,823 + MPMX19_01859 0.25 -1.4
1,936,823 + MPMX19_01859 0.25 -0.2
1,936,823 + MPMX19_01859 0.25 -1.5
1,936,823 + MPMX19_01859 0.25 -0.5
1,936,823 + MPMX19_01859 0.25 -0.9
1,936,823 + MPMX19_01859 0.25 +0.5
1,936,823 + MPMX19_01859 0.25 -0.6
1,936,823 + MPMX19_01859 0.25 -0.8
1,936,823 + MPMX19_01859 0.25 -2.7
1,936,823 + MPMX19_01859 0.25 -0.8
1,936,823 + MPMX19_01859 0.25 +1.5
1,936,823 + MPMX19_01859 0.25 -0.3
1,936,823 + MPMX19_01859 0.25 +0.7
1,936,824 - MPMX19_01859 0.25 +0.5
1,936,824 - MPMX19_01859 0.25 -1.0
1,936,824 - MPMX19_01859 0.25 -0.8
1,936,824 - MPMX19_01859 0.25 +0.3
1,936,824 - MPMX19_01859 0.25 -2.5
1,936,824 - MPMX19_01859 0.25 +1.3
1,936,824 - MPMX19_01859 0.25 -1.5
1,936,824 - MPMX19_01859 0.25 +0.2
1,936,824 - MPMX19_01859 0.25 -1.1
1,936,824 - MPMX19_01859 0.25 -0.6
1,936,824 - MPMX19_01859 0.25 -0.3
1,936,824 - MPMX19_01859 0.25 -0.2
1,936,824 - MPMX19_01859 0.25 -1.5
1,936,824 - MPMX19_01859 0.25 -0.3
1,936,824 - MPMX19_01859 0.25 +0.5
1,936,824 - MPMX19_01859 0.25 +0.7
1,936,824 - MPMX19_01859 0.25 -0.3
1,936,824 - MPMX19_01859 0.25 +0.4
1,937,096 + MPMX19_01859 0.37 -0.4
1,937,096 + MPMX19_01859 0.37 -0.4
1,937,096 + MPMX19_01859 0.37 -0.5
1,937,096 + MPMX19_01859 0.37 +0.4
1,937,096 + MPMX19_01859 0.37 -1.0
1,937,097 - MPMX19_01859 0.37 -1.5
1,937,097 - MPMX19_01859 0.37 -1.8
1,937,225 + MPMX19_01859 0.43 -2.8
1,937,225 + MPMX19_01859 0.43 -1.0
1,937,225 + MPMX19_01859 0.43 +0.7
1,937,225 + MPMX19_01859 0.43 -0.5
1,937,225 + MPMX19_01859 0.43 -1.0
1,937,225 + MPMX19_01859 0.43 -0.1
1,937,225 + MPMX19_01859 0.43 -1.2
1,937,226 - MPMX19_01859 0.43 -0.4
1,937,226 - MPMX19_01859 0.43 -1.8
1,937,226 - MPMX19_01859 0.43 -0.6
1,937,226 - MPMX19_01859 0.43 +0.5
1,937,226 - MPMX19_01859 0.43 -0.3
1,937,226 - MPMX19_01859 0.43 +0.4

Or see this region's nucleotide sequence