Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01810 and MPMX19_01811 are separated by 7 nucleotides MPMX19_01811 and MPMX19_01812 are separated by 48 nucleotides
MPMX19_01810: MPMX19_01810 - Chorismate synthase, at 1,892,063 to 1,893,142
_01810
MPMX19_01811: MPMX19_01811 - hypothetical protein, at 1,893,150 to 1,893,722
_01811
MPMX19_01812: MPMX19_01812 - Ribonuclease R, at 1,893,771 to 1,895,921
_01812
Position (kb) 1893
1894 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1893.279 kb on + strand, within MPMX19_01811 at 1893.279 kb on + strand, within MPMX19_01811 at 1893.279 kb on + strand, within MPMX19_01811 at 1893.279 kb on + strand, within MPMX19_01811 at 1893.279 kb on + strand, within MPMX19_01811 at 1893.279 kb on + strand, within MPMX19_01811 at 1893.280 kb on - strand, within MPMX19_01811 at 1893.280 kb on - strand, within MPMX19_01811 at 1893.280 kb on - strand, within MPMX19_01811 at 1893.682 kb on + strand at 1893.682 kb on + strand at 1893.683 kb on - strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.727 kb on + strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.728 kb on - strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.729 kb on + strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.730 kb on - strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.731 kb on + strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.732 kb on - strand at 1893.737 kb on + strand at 1893.737 kb on + strand at 1893.737 kb on + strand at 1893.737 kb on + strand at 1893.737 kb on + strand at 1893.737 kb on + strand at 1893.737 kb on + strand at 1893.738 kb on - strand at 1893.738 kb on - strand at 1893.738 kb on - strand at 1893.933 kb on - strand at 1894.176 kb on + strand, within MPMX19_01812 at 1894.176 kb on + strand, within MPMX19_01812 at 1894.176 kb on + strand, within MPMX19_01812 at 1894.176 kb on + strand, within MPMX19_01812 at 1894.177 kb on - strand, within MPMX19_01812 at 1894.177 kb on - strand, within MPMX19_01812 at 1894.236 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.677 kb on + strand, within MPMX19_01812 at 1894.678 kb on - strand, within MPMX19_01812 at 1894.678 kb on - strand, within MPMX19_01812 at 1894.678 kb on - strand, within MPMX19_01812 at 1894.678 kb on - strand, within MPMX19_01812 at 1894.678 kb on - strand, within MPMX19_01812 at 1894.678 kb on - strand, within MPMX19_01812 at 1894.678 kb on - strand, within MPMX19_01812 at 1894.678 kb on - strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.680 kb on + strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.681 kb on - strand, within MPMX19_01812 at 1894.716 kb on + strand, within MPMX19_01812
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 1,893,279 + MPMX19_01811 0.23 +0.3 1,893,279 + MPMX19_01811 0.23 -0.1 1,893,279 + MPMX19_01811 0.23 -1.6 1,893,279 + MPMX19_01811 0.23 -0.8 1,893,279 + MPMX19_01811 0.23 +0.9 1,893,279 + MPMX19_01811 0.23 +1.3 1,893,280 - MPMX19_01811 0.23 -1.3 1,893,280 - MPMX19_01811 0.23 +1.4 1,893,280 - MPMX19_01811 0.23 +0.4 1,893,682 + -0.3 1,893,682 + -0.9 1,893,683 - +1.3 1,893,727 + +0.2 1,893,727 + -0.5 1,893,727 + -0.6 1,893,727 + -0.5 1,893,727 + -0.5 1,893,727 + -0.7 1,893,727 + +1.5 1,893,727 + -1.3 1,893,727 + +0.6 1,893,727 + +0.8 1,893,727 + +0.6 1,893,727 + -0.1 1,893,727 + -0.8 1,893,727 + -0.2 1,893,727 + -0.1 1,893,727 + -0.4 1,893,727 + -0.1 1,893,727 + -0.4 1,893,727 + +0.9 1,893,727 + +1.5 1,893,727 + +0.4 1,893,727 + +0.3 1,893,727 + -0.8 1,893,727 + -0.2 1,893,727 + -1.3 1,893,727 + -0.8 1,893,727 + -0.8 1,893,727 + -1.1 1,893,727 + -0.7 1,893,727 + -0.1 1,893,727 + +0.2 1,893,727 + +1.2 1,893,727 + +0.8 1,893,727 + -0.5 1,893,727 + +0.7 1,893,727 + -0.1 1,893,727 + -1.6 1,893,727 + -0.3 1,893,727 + -0.4 1,893,728 - +0.1 1,893,728 - +0.3 1,893,728 - +0.4 1,893,728 - -0.4 1,893,728 - -0.6 1,893,728 - -0.1 1,893,728 - -0.2 1,893,728 - +0.0 1,893,728 - -0.4 1,893,728 - -1.5 1,893,728 - -0.9 1,893,728 - -0.5 1,893,728 - -1.1 1,893,728 - -0.5 1,893,728 - -0.2 1,893,728 - -0.5 1,893,728 - +0.5 1,893,728 - +0.5 1,893,728 - -2.1 1,893,728 - +0.2 1,893,728 - -1.5 1,893,728 - -1.8 1,893,728 - +0.0 1,893,728 - +0.7 1,893,728 - -0.2 1,893,728 - -0.1 1,893,728 - +0.1 1,893,728 - +0.0 1,893,728 - +1.8 1,893,729 + -1.1 1,893,729 + +0.4 1,893,729 + +0.2 1,893,729 + -0.5 1,893,729 + -1.3 1,893,729 + -0.1 1,893,729 + -0.9 1,893,729 + +0.7 1,893,729 + -0.5 1,893,729 + +1.3 1,893,729 + -0.1 1,893,729 + +0.2 1,893,729 + +1.2 1,893,729 + -0.6 1,893,729 + -1.5 1,893,729 + -0.2 1,893,729 + -0.1 1,893,729 + -1.4 1,893,729 + -1.6 1,893,729 + -0.5 1,893,729 + -1.1 1,893,729 + -1.1 1,893,729 + -2.3 1,893,729 + +0.5 1,893,729 + -1.4 1,893,729 + -1.1 1,893,730 - -0.9 1,893,730 - -0.5 1,893,730 - +0.5 1,893,730 - +0.9 1,893,730 - +0.5 1,893,730 - -0.0 1,893,730 - -0.3 1,893,730 - -0.5 1,893,730 - -1.6 1,893,730 - +0.5 1,893,730 - -0.9 1,893,730 - +1.8 1,893,730 - -0.9 1,893,730 - -0.2 1,893,730 - -1.6 1,893,730 - +0.8 1,893,730 - +1.1 1,893,730 - -0.8 1,893,730 - +2.3 1,893,730 - -0.1 1,893,730 - -0.3 1,893,730 - -0.6 1,893,730 - -1.3 1,893,730 - +0.9 1,893,730 - -0.3 1,893,730 - -0.8 1,893,730 - -1.1 1,893,730 - -1.1 1,893,730 - -0.7 1,893,730 - -0.5 1,893,730 - -0.6 1,893,730 - -0.6 1,893,730 - +0.4 1,893,730 - -0.6 1,893,730 - +0.3 1,893,730 - -0.8 1,893,731 + -0.9 1,893,731 + -0.6 1,893,731 + -1.5 1,893,731 + -0.8 1,893,731 + -1.3 1,893,731 + -0.3 1,893,731 + -0.8 1,893,731 + -0.3 1,893,731 + -0.2 1,893,731 + -0.3 1,893,731 + +0.8 1,893,731 + -0.3 1,893,731 + -0.4 1,893,731 + +0.6 1,893,731 + -0.1 1,893,731 + +0.3 1,893,731 + -1.1 1,893,731 + -0.1 1,893,731 + +0.9 1,893,731 + -0.3 1,893,731 + -1.0 1,893,731 + -0.0 1,893,731 + +0.7 1,893,731 + -0.9 1,893,731 + +0.0 1,893,731 + -0.9 1,893,731 + -0.8 1,893,731 + -1.7 1,893,731 + -0.9 1,893,731 + -0.7 1,893,731 + +0.1 1,893,731 + -0.9 1,893,731 + -0.5 1,893,731 + -0.9 1,893,731 + -1.6 1,893,731 + -1.1 1,893,731 + -0.3 1,893,731 + -0.1 1,893,731 + -1.1 1,893,731 + -0.6 1,893,731 + +1.5 1,893,731 + +0.4 1,893,732 - -2.1 1,893,732 - -0.8 1,893,732 - -1.5 1,893,732 - +1.3 1,893,732 - -2.1 1,893,732 - -1.3 1,893,732 - -0.2 1,893,732 - +0.3 1,893,732 - -0.5 1,893,732 - +0.5 1,893,732 - -1.7 1,893,732 - -0.9 1,893,732 - -1.6 1,893,732 - +1.7 1,893,732 - -0.8 1,893,732 - -0.5 1,893,732 - -0.5 1,893,732 - -1.8 1,893,732 - +1.2 1,893,732 - +1.5 1,893,732 - +0.1 1,893,732 - -1.1 1,893,732 - -1.8 1,893,732 - -0.1 1,893,732 - -2.7 1,893,732 - -1.3 1,893,732 - -0.3 1,893,732 - -1.1 1,893,732 - -0.6 1,893,732 - +0.1 1,893,732 - -1.3 1,893,732 - -0.1 1,893,732 - -1.4 1,893,732 - -0.6 1,893,732 - -1.8 1,893,732 - +0.1 1,893,732 - -2.1 1,893,732 - +0.9 1,893,737 + -0.5 1,893,737 + +0.5 1,893,737 + -0.1 1,893,737 + -0.3 1,893,737 + +0.9 1,893,737 + -1.6 1,893,737 + -0.6 1,893,738 - -1.8 1,893,738 - -1.6 1,893,738 - -1.1 1,893,933 - -0.5 1,894,176 + MPMX19_01812 0.19 +1.1 1,894,176 + MPMX19_01812 0.19 +0.1 1,894,176 + MPMX19_01812 0.19 -1.5 1,894,176 + MPMX19_01812 0.19 -1.6 1,894,177 - MPMX19_01812 0.19 -0.1 1,894,177 - MPMX19_01812 0.19 +0.1 1,894,236 + MPMX19_01812 0.22 -1.2 1,894,677 + MPMX19_01812 0.42 -0.5 1,894,677 + MPMX19_01812 0.42 -0.3 1,894,677 + MPMX19_01812 0.42 -0.9 1,894,677 + MPMX19_01812 0.42 -2.2 1,894,677 + MPMX19_01812 0.42 -1.2 1,894,677 + MPMX19_01812 0.42 -0.3 1,894,677 + MPMX19_01812 0.42 -1.3 1,894,677 + MPMX19_01812 0.42 -0.6 1,894,677 + MPMX19_01812 0.42 +0.0 1,894,677 + MPMX19_01812 0.42 -2.0 1,894,677 + MPMX19_01812 0.42 -0.3 1,894,678 - MPMX19_01812 0.42 -1.2 1,894,678 - MPMX19_01812 0.42 -0.4 1,894,678 - MPMX19_01812 0.42 +0.6 1,894,678 - MPMX19_01812 0.42 -0.3 1,894,678 - MPMX19_01812 0.42 -0.1 1,894,678 - MPMX19_01812 0.42 -1.4 1,894,678 - MPMX19_01812 0.42 -1.8 1,894,678 - MPMX19_01812 0.42 -0.1 1,894,680 + MPMX19_01812 0.42 -1.8 1,894,680 + MPMX19_01812 0.42 -0.8 1,894,680 + MPMX19_01812 0.42 -1.0 1,894,680 + MPMX19_01812 0.42 -0.5 1,894,680 + MPMX19_01812 0.42 -0.1 1,894,680 + MPMX19_01812 0.42 +1.1 1,894,680 + MPMX19_01812 0.42 +0.9 1,894,680 + MPMX19_01812 0.42 -1.9 1,894,680 + MPMX19_01812 0.42 -1.1 1,894,680 + MPMX19_01812 0.42 +0.7 1,894,680 + MPMX19_01812 0.42 -1.4 1,894,680 + MPMX19_01812 0.42 -0.8 1,894,681 - MPMX19_01812 0.42 -2.3 1,894,681 - MPMX19_01812 0.42 +0.3 1,894,681 - MPMX19_01812 0.42 +0.5 1,894,681 - MPMX19_01812 0.42 +0.9 1,894,681 - MPMX19_01812 0.42 -0.1 1,894,681 - MPMX19_01812 0.42 +0.2 1,894,681 - MPMX19_01812 0.42 -2.8 1,894,681 - MPMX19_01812 0.42 -0.4 1,894,681 - MPMX19_01812 0.42 -3.6 1,894,681 - MPMX19_01812 0.42 -0.3 1,894,681 - MPMX19_01812 0.42 -2.1 1,894,681 - MPMX19_01812 0.42 -0.1 1,894,681 - MPMX19_01812 0.42 +0.0 1,894,681 - MPMX19_01812 0.42 -0.9 1,894,681 - MPMX19_01812 0.42 -1.3 1,894,681 - MPMX19_01812 0.42 -0.5 1,894,716 + MPMX19_01812 0.44 -1.0
Or see this region's nucleotide sequence