Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00785 and MPMX19_00786 are separated by 234 nucleotides MPMX19_00786 and MPMX19_00787 are separated by 237 nucleotides
MPMX19_00785: MPMX19_00785 - hypothetical protein, at 803,980 to 806,463
_00785
MPMX19_00786: MPMX19_00786 - Adaptive-response sensory-kinase SasA, at 806,698 to 808,338
_00786
MPMX19_00787: MPMX19_00787 - Sensor histidine kinase RcsC, at 808,576 to 809,934
_00787
Position (kb) 806
807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2 at 805.993 kb on + strand, within MPMX19_00785 at 805.993 kb on + strand, within MPMX19_00785 at 805.993 kb on + strand, within MPMX19_00785 at 805.993 kb on + strand, within MPMX19_00785 at 805.993 kb on + strand, within MPMX19_00785 at 805.994 kb on - strand, within MPMX19_00785 at 805.994 kb on - strand, within MPMX19_00785 at 805.994 kb on - strand, within MPMX19_00785 at 806.317 kb on + strand at 806.516 kb on + strand at 806.516 kb on + strand at 806.517 kb on - strand at 806.517 kb on - strand at 806.549 kb on + strand at 806.550 kb on - strand at 806.597 kb on + strand at 806.597 kb on + strand at 806.597 kb on + strand at 806.598 kb on - strand at 806.651 kb on + strand at 806.651 kb on + strand at 806.652 kb on - strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.824 kb on + strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.825 kb on - strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.845 kb on + strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 806.846 kb on - strand at 807.016 kb on + strand, within MPMX19_00786 at 807.165 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.457 kb on + strand, within MPMX19_00786 at 807.673 kb on + strand, within MPMX19_00786 at 807.673 kb on + strand, within MPMX19_00786 at 807.673 kb on + strand, within MPMX19_00786 at 807.673 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.721 kb on + strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 807.722 kb on - strand, within MPMX19_00786 at 808.037 kb on - strand, within MPMX19_00786 at 808.052 kb on - strand, within MPMX19_00786 at 808.067 kb on + strand, within MPMX19_00786 at 808.067 kb on + strand, within MPMX19_00786 at 808.067 kb on + strand, within MPMX19_00786 at 808.067 kb on + strand, within MPMX19_00786 at 808.068 kb on - strand, within MPMX19_00786 at 808.068 kb on - strand, within MPMX19_00786 at 808.068 kb on - strand, within MPMX19_00786 at 808.096 kb on + strand, within MPMX19_00786 at 808.096 kb on + strand, within MPMX19_00786 at 808.096 kb on + strand, within MPMX19_00786 at 808.097 kb on - strand, within MPMX19_00786 at 808.097 kb on - strand, within MPMX19_00786 at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.414 kb on + strand at 808.415 kb on - strand at 808.415 kb on - strand at 808.415 kb on - strand at 808.415 kb on - strand at 808.415 kb on - strand at 808.415 kb on - strand at 808.415 kb on - strand at 808.415 kb on - strand at 808.563 kb on + strand at 808.563 kb on + strand at 808.563 kb on + strand at 808.564 kb on - strand at 808.564 kb on - strand at 808.564 kb on - strand at 808.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 805,993 + MPMX19_00785 0.81 +0.8 805,993 + MPMX19_00785 0.81 -1.1 805,993 + MPMX19_00785 0.81 -0.1 805,993 + MPMX19_00785 0.81 -1.5 805,993 + MPMX19_00785 0.81 -0.0 805,994 - MPMX19_00785 0.81 -0.7 805,994 - MPMX19_00785 0.81 +0.2 805,994 - MPMX19_00785 0.81 +0.4 806,317 + -1.5 806,516 + -1.2 806,516 + +1.3 806,517 - +0.4 806,517 - +0.0 806,549 + -0.7 806,550 - -1.3 806,597 + -1.0 806,597 + +0.1 806,597 + -0.8 806,598 - -0.2 806,651 + -0.2 806,651 + +0.2 806,652 - +0.7 806,824 + +1.5 806,824 + +0.5 806,824 + -0.4 806,824 + -2.1 806,824 + +0.5 806,824 + -0.8 806,824 + -0.7 806,825 - -0.0 806,825 - -0.2 806,825 - +1.5 806,825 - +0.2 806,825 - -0.9 806,825 - -1.7 806,825 - -0.3 806,825 - -1.8 806,825 - -0.4 806,825 - -0.8 806,825 - +0.2 806,825 - -0.5 806,825 - -0.8 806,825 - -0.2 806,845 + +0.0 806,845 + -1.5 806,845 + -2.4 806,845 + -0.7 806,845 + +0.5 806,845 + +0.3 806,845 + -1.0 806,845 + -1.5 806,845 + +0.2 806,845 + +0.0 806,845 + -1.0 806,845 + +0.2 806,845 + -0.7 806,845 + -0.7 806,845 + -1.5 806,846 - -2.0 806,846 - -0.6 806,846 - +0.3 806,846 - -0.1 806,846 - -1.0 806,846 - -0.8 806,846 - -2.1 806,846 - +0.3 806,846 - +0.6 806,846 - -0.1 807,016 + MPMX19_00786 0.19 -1.0 807,165 + MPMX19_00786 0.28 +0.1 807,457 + MPMX19_00786 0.46 +0.6 807,457 + MPMX19_00786 0.46 -0.7 807,457 + MPMX19_00786 0.46 +0.2 807,457 + MPMX19_00786 0.46 +0.1 807,457 + MPMX19_00786 0.46 -0.1 807,457 + MPMX19_00786 0.46 -0.3 807,673 + MPMX19_00786 0.59 +0.9 807,673 + MPMX19_00786 0.59 -0.7 807,673 + MPMX19_00786 0.59 -1.8 807,673 + MPMX19_00786 0.59 +0.5 807,721 + MPMX19_00786 0.62 +0.4 807,721 + MPMX19_00786 0.62 -2.5 807,721 + MPMX19_00786 0.62 -0.7 807,721 + MPMX19_00786 0.62 -1.0 807,721 + MPMX19_00786 0.62 +0.2 807,721 + MPMX19_00786 0.62 -0.4 807,721 + MPMX19_00786 0.62 -2.4 807,721 + MPMX19_00786 0.62 +0.1 807,721 + MPMX19_00786 0.62 +0.9 807,721 + MPMX19_00786 0.62 -1.1 807,721 + MPMX19_00786 0.62 -0.2 807,721 + MPMX19_00786 0.62 -0.6 807,721 + MPMX19_00786 0.62 -2.0 807,721 + MPMX19_00786 0.62 +1.0 807,721 + MPMX19_00786 0.62 +0.6 807,721 + MPMX19_00786 0.62 +0.2 807,721 + MPMX19_00786 0.62 -0.7 807,721 + MPMX19_00786 0.62 -0.2 807,722 - MPMX19_00786 0.62 -1.0 807,722 - MPMX19_00786 0.62 +0.2 807,722 - MPMX19_00786 0.62 -1.7 807,722 - MPMX19_00786 0.62 -0.8 807,722 - MPMX19_00786 0.62 +1.3 807,722 - MPMX19_00786 0.62 +0.1 807,722 - MPMX19_00786 0.62 +1.8 807,722 - MPMX19_00786 0.62 -2.0 807,722 - MPMX19_00786 0.62 -0.4 807,722 - MPMX19_00786 0.62 -0.5 807,722 - MPMX19_00786 0.62 +0.5 807,722 - MPMX19_00786 0.62 -0.3 807,722 - MPMX19_00786 0.62 -0.5 807,722 - MPMX19_00786 0.62 +1.8 807,722 - MPMX19_00786 0.62 -0.4 807,722 - MPMX19_00786 0.62 -0.3 807,722 - MPMX19_00786 0.62 -0.5 807,722 - MPMX19_00786 0.62 -0.8 807,722 - MPMX19_00786 0.62 -0.4 807,722 - MPMX19_00786 0.62 -0.6 807,722 - MPMX19_00786 0.62 +0.0 808,037 - MPMX19_00786 0.82 -2.0 808,052 - MPMX19_00786 0.83 +0.9 808,067 + MPMX19_00786 0.83 -1.7 808,067 + MPMX19_00786 0.83 -0.7 808,067 + MPMX19_00786 0.83 -0.7 808,067 + MPMX19_00786 0.83 -1.1 808,068 - MPMX19_00786 0.83 +0.3 808,068 - MPMX19_00786 0.83 +0.5 808,068 - MPMX19_00786 0.83 -0.5 808,096 + MPMX19_00786 0.85 -1.0 808,096 + MPMX19_00786 0.85 -1.0 808,096 + MPMX19_00786 0.85 -0.5 808,097 - MPMX19_00786 0.85 +0.7 808,097 - MPMX19_00786 0.85 -0.2 808,414 + -1.6 808,414 + +0.2 808,414 + -1.3 808,414 + +0.4 808,414 + -1.7 808,414 + -0.4 808,414 + -0.7 808,414 + -0.1 808,414 + -0.8 808,414 + -0.9 808,414 + +2.0 808,414 + -1.1 808,414 + -0.6 808,415 - -0.2 808,415 - -0.8 808,415 - -0.5 808,415 - -1.8 808,415 - -1.3 808,415 - +2.2 808,415 - -1.3 808,415 - -1.6 808,563 + +0.9 808,563 + -0.6 808,563 + -2.1 808,564 - +0.1 808,564 - -0.2 808,564 - -0.1 808,564 - -0.1
Or see this region's nucleotide sequence