Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00209 and MPMX19_00210 are separated by 242 nucleotides MPMX19_00210 and MPMX19_00211 are separated by 38 nucleotides
MPMX19_00209: MPMX19_00209 - Cbb3-type cytochrome c oxidase subunit FixP, at 210,422 to 211,312
_00209
MPMX19_00210: MPMX19_00210 - hypothetical protein, at 211,555 to 212,085
_00210
MPMX19_00211: MPMX19_00211 - putative copper-importing P-type ATPase A, at 212,124 to 214,658
_00211
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 210.560 kb on + strand, within MPMX19_00209 at 210.560 kb on + strand, within MPMX19_00209 at 210.560 kb on + strand, within MPMX19_00209 at 210.560 kb on + strand, within MPMX19_00209 at 210.560 kb on + strand, within MPMX19_00209 at 210.560 kb on + strand, within MPMX19_00209 at 210.560 kb on + strand, within MPMX19_00209 at 210.560 kb on + strand, within MPMX19_00209 at 210.560 kb on + strand, within MPMX19_00209 at 210.561 kb on - strand, within MPMX19_00209 at 210.561 kb on - strand, within MPMX19_00209 at 210.561 kb on - strand, within MPMX19_00209 at 210.561 kb on - strand, within MPMX19_00209 at 210.561 kb on - strand, within MPMX19_00209 at 210.561 kb on - strand, within MPMX19_00209 at 210.561 kb on - strand, within MPMX19_00209 at 210.561 kb on - strand, within MPMX19_00209 at 210.563 kb on + strand, within MPMX19_00209 at 210.563 kb on + strand, within MPMX19_00209 at 210.563 kb on + strand, within MPMX19_00209 at 210.563 kb on + strand, within MPMX19_00209 at 210.563 kb on + strand, within MPMX19_00209 at 210.563 kb on + strand, within MPMX19_00209 at 210.563 kb on + strand, within MPMX19_00209 at 210.563 kb on + strand, within MPMX19_00209 at 210.564 kb on - strand, within MPMX19_00209 at 210.564 kb on - strand, within MPMX19_00209 at 210.564 kb on - strand, within MPMX19_00209 at 210.564 kb on - strand, within MPMX19_00209 at 210.564 kb on - strand, within MPMX19_00209 at 210.564 kb on - strand, within MPMX19_00209 at 210.564 kb on - strand, within MPMX19_00209 at 210.564 kb on - strand, within MPMX19_00209 at 210.572 kb on + strand, within MPMX19_00209 at 210.572 kb on + strand, within MPMX19_00209 at 210.572 kb on + strand, within MPMX19_00209 at 210.599 kb on + strand, within MPMX19_00209 at 210.599 kb on + strand, within MPMX19_00209 at 210.599 kb on + strand, within MPMX19_00209 at 210.600 kb on - strand, within MPMX19_00209 at 210.620 kb on + strand, within MPMX19_00209 at 210.621 kb on - strand, within MPMX19_00209 at 210.767 kb on + strand, within MPMX19_00209 at 210.768 kb on - strand, within MPMX19_00209 at 210.768 kb on - strand, within MPMX19_00209 at 210.768 kb on - strand, within MPMX19_00209 at 210.768 kb on - strand, within MPMX19_00209 at 210.768 kb on - strand, within MPMX19_00209 at 210.768 kb on - strand, within MPMX19_00209 at 210.768 kb on - strand, within MPMX19_00209 at 210.878 kb on + strand, within MPMX19_00209 at 210.878 kb on + strand, within MPMX19_00209 at 210.878 kb on + strand, within MPMX19_00209 at 210.878 kb on + strand, within MPMX19_00209 at 210.878 kb on + strand, within MPMX19_00209 at 210.878 kb on + strand, within MPMX19_00209 at 210.878 kb on + strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 210.879 kb on - strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.004 kb on + strand, within MPMX19_00209 at 211.005 kb on - strand, within MPMX19_00209 at 211.005 kb on - strand, within MPMX19_00209 at 211.005 kb on - strand, within MPMX19_00209 at 211.005 kb on - strand, within MPMX19_00209 at 211.005 kb on - strand, within MPMX19_00209 at 211.005 kb on - strand, within MPMX19_00209 at 211.005 kb on - strand, within MPMX19_00209 at 211.067 kb on + strand, within MPMX19_00209 at 211.067 kb on + strand, within MPMX19_00209 at 211.067 kb on + strand, within MPMX19_00209 at 211.068 kb on - strand, within MPMX19_00209 at 211.068 kb on - strand, within MPMX19_00209 at 211.173 kb on - strand, within MPMX19_00209 at 211.283 kb on + strand at 211.283 kb on + strand at 211.284 kb on - strand at 211.284 kb on - strand at 211.310 kb on + strand at 211.310 kb on + strand at 211.310 kb on + strand at 211.310 kb on + strand at 211.311 kb on - strand at 211.311 kb on - strand at 211.311 kb on - strand at 211.311 kb on - strand at 211.311 kb on - strand at 211.311 kb on - strand at 211.311 kb on - strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.450 kb on + strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.451 kb on - strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.472 kb on + strand at 211.473 kb on - strand at 211.473 kb on - strand at 211.473 kb on - strand at 211.473 kb on - strand at 211.473 kb on - strand at 211.473 kb on - strand at 211.516 kb on + strand at 211.516 kb on + strand at 211.516 kb on + strand at 211.516 kb on + strand at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.630 kb on + strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.631 kb on - strand, within MPMX19_00210 at 211.756 kb on + strand, within MPMX19_00210 at 211.757 kb on - strand, within MPMX19_00210 at 211.960 kb on + strand, within MPMX19_00210 at 211.960 kb on + strand, within MPMX19_00210 at 211.960 kb on + strand, within MPMX19_00210 at 211.960 kb on + strand, within MPMX19_00210 at 211.960 kb on + strand, within MPMX19_00210 at 211.961 kb on - strand, within MPMX19_00210 at 211.961 kb on - strand, within MPMX19_00210 at 211.961 kb on - strand, within MPMX19_00210 at 211.978 kb on + strand, within MPMX19_00210 at 211.978 kb on + strand, within MPMX19_00210 at 211.978 kb on + strand, within MPMX19_00210 at 212.053 kb on + strand at 212.053 kb on + strand at 212.235 kb on + strand at 212.235 kb on + strand at 212.235 kb on + strand at 212.236 kb on - strand at 212.236 kb on - strand at 212.268 kb on + strand at 212.268 kb on + strand at 212.269 kb on - strand at 212.269 kb on - strand at 212.271 kb on + strand at 212.271 kb on + strand at 212.271 kb on + strand at 212.337 kb on + strand at 212.778 kb on + strand, within MPMX19_00211 at 212.779 kb on - strand, within MPMX19_00211 at 212.779 kb on - strand, within MPMX19_00211 at 212.919 kb on + strand, within MPMX19_00211 at 212.919 kb on + strand, within MPMX19_00211 at 212.919 kb on + strand, within MPMX19_00211
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 210,560 + MPMX19_00209 0.15 +0.6 210,560 + MPMX19_00209 0.15 +0.6 210,560 + MPMX19_00209 0.15 +0.0 210,560 + MPMX19_00209 0.15 -0.4 210,560 + MPMX19_00209 0.15 +0.6 210,560 + MPMX19_00209 0.15 +0.6 210,560 + MPMX19_00209 0.15 +0.3 210,560 + MPMX19_00209 0.15 +1.0 210,560 + MPMX19_00209 0.15 +4.0 210,561 - MPMX19_00209 0.16 +0.3 210,561 - MPMX19_00209 0.16 -0.2 210,561 - MPMX19_00209 0.16 -0.4 210,561 - MPMX19_00209 0.16 +2.2 210,561 - MPMX19_00209 0.16 +0.0 210,561 - MPMX19_00209 0.16 +0.6 210,561 - MPMX19_00209 0.16 +0.6 210,561 - MPMX19_00209 0.16 +1.6 210,563 + MPMX19_00209 0.16 +0.0 210,563 + MPMX19_00209 0.16 +0.5 210,563 + MPMX19_00209 0.16 -0.4 210,563 + MPMX19_00209 0.16 +0.3 210,563 + MPMX19_00209 0.16 -1.8 210,563 + MPMX19_00209 0.16 +1.6 210,563 + MPMX19_00209 0.16 -0.4 210,563 + MPMX19_00209 0.16 +2.6 210,564 - MPMX19_00209 0.16 +0.6 210,564 - MPMX19_00209 0.16 -0.7 210,564 - MPMX19_00209 0.16 +2.6 210,564 - MPMX19_00209 0.16 +0.0 210,564 - MPMX19_00209 0.16 +1.6 210,564 - MPMX19_00209 0.16 +1.6 210,564 - MPMX19_00209 0.16 +0.0 210,564 - MPMX19_00209 0.16 +0.2 210,572 + MPMX19_00209 0.17 -0.8 210,572 + MPMX19_00209 0.17 +0.3 210,572 + MPMX19_00209 0.17 +0.0 210,599 + MPMX19_00209 0.20 +0.4 210,599 + MPMX19_00209 0.20 -1.7 210,599 + MPMX19_00209 0.20 +0.6 210,600 - MPMX19_00209 0.20 +0.6 210,620 + MPMX19_00209 0.22 -0.4 210,621 - MPMX19_00209 0.22 +3.2 210,767 + MPMX19_00209 0.39 +0.0 210,768 - MPMX19_00209 0.39 -1.0 210,768 - MPMX19_00209 0.39 -0.7 210,768 - MPMX19_00209 0.39 +1.6 210,768 - MPMX19_00209 0.39 +0.0 210,768 - MPMX19_00209 0.39 +0.9 210,768 - MPMX19_00209 0.39 +1.6 210,768 - MPMX19_00209 0.39 +0.0 210,878 + MPMX19_00209 0.51 +0.6 210,878 + MPMX19_00209 0.51 -0.4 210,878 + MPMX19_00209 0.51 +0.0 210,878 + MPMX19_00209 0.51 -0.2 210,878 + MPMX19_00209 0.51 +1.1 210,878 + MPMX19_00209 0.51 -1.2 210,878 + MPMX19_00209 0.51 -0.2 210,879 - MPMX19_00209 0.51 +0.8 210,879 - MPMX19_00209 0.51 +1.6 210,879 - MPMX19_00209 0.51 +2.0 210,879 - MPMX19_00209 0.51 +0.4 210,879 - MPMX19_00209 0.51 +2.0 210,879 - MPMX19_00209 0.51 +1.2 210,879 - MPMX19_00209 0.51 +0.0 210,879 - MPMX19_00209 0.51 +0.6 210,879 - MPMX19_00209 0.51 -1.2 210,879 - MPMX19_00209 0.51 +0.4 210,879 - MPMX19_00209 0.51 -1.0 210,879 - MPMX19_00209 0.51 -1.0 210,879 - MPMX19_00209 0.51 +0.6 210,879 - MPMX19_00209 0.51 +0.0 211,004 + MPMX19_00209 0.65 +0.0 211,004 + MPMX19_00209 0.65 -0.4 211,004 + MPMX19_00209 0.65 -0.4 211,004 + MPMX19_00209 0.65 +0.6 211,004 + MPMX19_00209 0.65 -0.4 211,004 + MPMX19_00209 0.65 +0.6 211,004 + MPMX19_00209 0.65 +1.6 211,004 + MPMX19_00209 0.65 +1.6 211,004 + MPMX19_00209 0.65 +2.6 211,004 + MPMX19_00209 0.65 -0.9 211,004 + MPMX19_00209 0.65 +1.6 211,004 + MPMX19_00209 0.65 +1.3 211,005 - MPMX19_00209 0.65 +1.0 211,005 - MPMX19_00209 0.65 +3.8 211,005 - MPMX19_00209 0.65 -1.4 211,005 - MPMX19_00209 0.65 +1.6 211,005 - MPMX19_00209 0.65 +1.3 211,005 - MPMX19_00209 0.65 +0.0 211,005 - MPMX19_00209 0.65 +0.3 211,067 + MPMX19_00209 0.72 -0.4 211,067 + MPMX19_00209 0.72 +2.9 211,067 + MPMX19_00209 0.72 -1.2 211,068 - MPMX19_00209 0.73 -0.5 211,068 - MPMX19_00209 0.73 -1.4 211,173 - MPMX19_00209 0.84 +0.6 211,283 + -1.0 211,283 + +3.2 211,284 - +0.9 211,284 - -0.4 211,310 + -0.5 211,310 + +0.2 211,310 + +0.3 211,310 + +0.3 211,311 - +1.9 211,311 - -0.4 211,311 - -0.5 211,311 - -0.1 211,311 - +0.1 211,311 - +0.5 211,311 - -1.5 211,450 + +0.1 211,450 + -0.7 211,450 + +0.4 211,450 + -1.5 211,450 + +0.3 211,450 + +0.4 211,450 + -0.2 211,450 + -0.5 211,450 + -1.1 211,450 + -1.7 211,450 + +0.5 211,450 + -1.1 211,450 + +0.0 211,450 + +1.1 211,450 + +0.2 211,450 + -1.5 211,450 + +0.2 211,450 + +0.6 211,450 + -1.4 211,450 + -0.1 211,450 + -0.5 211,450 + -1.0 211,451 - -0.5 211,451 - +0.4 211,451 - -1.2 211,451 - -1.4 211,451 - +0.6 211,451 - +0.3 211,451 - -0.1 211,451 - +0.0 211,451 - -2.4 211,451 - -1.3 211,451 - -1.5 211,451 - -0.2 211,472 + +0.9 211,472 + -1.4 211,472 + -1.2 211,472 + -0.7 211,472 + -0.4 211,472 + +1.0 211,472 + -0.2 211,472 + -1.2 211,472 + +0.0 211,472 + -0.6 211,472 + +0.6 211,472 + +1.0 211,472 + +0.5 211,473 - +0.2 211,473 - -0.7 211,473 - +1.9 211,473 - -1.7 211,473 - -0.2 211,473 - +0.0 211,516 + +0.3 211,516 + -0.6 211,516 + +0.2 211,516 + +0.0 211,630 + MPMX19_00210 0.14 -0.4 211,630 + MPMX19_00210 0.14 -1.4 211,630 + MPMX19_00210 0.14 +0.0 211,630 + MPMX19_00210 0.14 +1.6 211,630 + MPMX19_00210 0.14 -0.8 211,630 + MPMX19_00210 0.14 -0.4 211,630 + MPMX19_00210 0.14 -0.8 211,630 + MPMX19_00210 0.14 -0.8 211,630 + MPMX19_00210 0.14 +0.0 211,630 + MPMX19_00210 0.14 -0.8 211,630 + MPMX19_00210 0.14 +0.6 211,630 + MPMX19_00210 0.14 +0.3 211,630 + MPMX19_00210 0.14 -0.4 211,630 + MPMX19_00210 0.14 -0.2 211,630 + MPMX19_00210 0.14 -0.4 211,630 + MPMX19_00210 0.14 -0.6 211,630 + MPMX19_00210 0.14 -0.4 211,631 - MPMX19_00210 0.14 +2.0 211,631 - MPMX19_00210 0.14 +0.4 211,631 - MPMX19_00210 0.14 -1.0 211,631 - MPMX19_00210 0.14 -1.0 211,631 - MPMX19_00210 0.14 +0.8 211,631 - MPMX19_00210 0.14 +0.8 211,631 - MPMX19_00210 0.14 +0.6 211,631 - MPMX19_00210 0.14 +0.9 211,631 - MPMX19_00210 0.14 +2.2 211,631 - MPMX19_00210 0.14 +0.9 211,631 - MPMX19_00210 0.14 +0.0 211,631 - MPMX19_00210 0.14 -1.0 211,631 - MPMX19_00210 0.14 -1.2 211,631 - MPMX19_00210 0.14 -0.4 211,631 - MPMX19_00210 0.14 +2.6 211,631 - MPMX19_00210 0.14 +2.0 211,631 - MPMX19_00210 0.14 +0.6 211,631 - MPMX19_00210 0.14 +0.0 211,631 - MPMX19_00210 0.14 +0.6 211,631 - MPMX19_00210 0.14 +0.0 211,631 - MPMX19_00210 0.14 +1.6 211,756 + MPMX19_00210 0.38 -1.7 211,757 - MPMX19_00210 0.38 +1.2 211,960 + MPMX19_00210 0.76 -0.1 211,960 + MPMX19_00210 0.76 -1.4 211,960 + MPMX19_00210 0.76 -0.2 211,960 + MPMX19_00210 0.76 +0.9 211,960 + MPMX19_00210 0.76 -1.8 211,961 - MPMX19_00210 0.76 -1.0 211,961 - MPMX19_00210 0.76 +0.6 211,961 - MPMX19_00210 0.76 +0.0 211,978 + MPMX19_00210 0.80 +0.6 211,978 + MPMX19_00210 0.80 +1.6 211,978 + MPMX19_00210 0.80 -0.8 212,053 + +1.0 212,053 + +0.0 212,235 + +0.6 212,235 + +2.2 212,235 + +1.6 212,236 - -0.5 212,236 - +0.0 212,268 + +2.6 212,268 + +1.6 212,269 - +0.6 212,269 - -0.7 212,271 + -1.0 212,271 + -0.4 212,271 + +3.0 212,337 + +0.9 212,778 + MPMX19_00211 0.26 +1.0 212,779 - MPMX19_00211 0.26 +0.0 212,779 - MPMX19_00211 0.26 -0.7 212,919 + MPMX19_00211 0.31 +1.0 212,919 + MPMX19_00211 0.31 +0.6 212,919 + MPMX19_00211 0.31 -0.7
Or see this region's nucleotide sequence