Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00076 and MPMX19_00077 overlap by 59 nucleotides MPMX19_00077 and MPMX19_00078 are separated by 79 nucleotides
MPMX19_00076: MPMX19_00076 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 80,915 to 82,735
_00076
MPMX19_00077: MPMX19_00077 - Ribosomal large subunit pseudouridine synthase E, at 82,677 to 83,336
_00077
MPMX19_00078: MPMX19_00078 - Glyoxylate/hydroxypyruvate reductase A, at 83,416 to 84,342
_00078
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.791 kb on + strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.792 kb on - strand, within MPMX19_00076 at 81.863 kb on + strand, within MPMX19_00076 at 81.863 kb on + strand, within MPMX19_00076 at 81.863 kb on + strand, within MPMX19_00076 at 81.863 kb on + strand, within MPMX19_00076 at 81.864 kb on - strand, within MPMX19_00076 at 81.864 kb on - strand, within MPMX19_00076 at 81.864 kb on - strand, within MPMX19_00076 at 81.881 kb on + strand, within MPMX19_00076 at 81.881 kb on + strand, within MPMX19_00076 at 81.882 kb on - strand, within MPMX19_00076 at 81.882 kb on - strand, within MPMX19_00076 at 82.016 kb on + strand, within MPMX19_00076 at 82.016 kb on + strand, within MPMX19_00076 at 82.016 kb on + strand, within MPMX19_00076 at 82.016 kb on + strand, within MPMX19_00076 at 82.016 kb on + strand, within MPMX19_00076 at 82.017 kb on - strand, within MPMX19_00076 at 82.017 kb on - strand, within MPMX19_00076 at 82.017 kb on - strand, within MPMX19_00076 at 82.017 kb on - strand, within MPMX19_00076 at 82.017 kb on - strand, within MPMX19_00076 at 82.017 kb on - strand, within MPMX19_00076 at 82.017 kb on - strand, within MPMX19_00076 at 82.241 kb on + strand, within MPMX19_00076 at 82.241 kb on + strand, within MPMX19_00076 at 82.241 kb on + strand, within MPMX19_00076 at 82.241 kb on + strand, within MPMX19_00076 at 82.241 kb on + strand, within MPMX19_00076 at 82.241 kb on + strand, within MPMX19_00076 at 82.242 kb on - strand, within MPMX19_00076 at 82.242 kb on - strand, within MPMX19_00076 at 82.242 kb on - strand, within MPMX19_00076 at 82.242 kb on - strand, within MPMX19_00076 at 82.242 kb on - strand, within MPMX19_00076 at 82.242 kb on - strand, within MPMX19_00076 at 82.242 kb on - strand, within MPMX19_00076 at 82.242 kb on - strand, within MPMX19_00076 at 82.366 kb on + strand, within MPMX19_00076 at 82.366 kb on + strand, within MPMX19_00076 at 82.366 kb on + strand, within MPMX19_00076 at 82.366 kb on + strand, within MPMX19_00076 at 82.366 kb on + strand, within MPMX19_00076 at 82.366 kb on + strand, within MPMX19_00076 at 82.367 kb on - strand, within MPMX19_00076 at 82.367 kb on - strand, within MPMX19_00076 at 82.367 kb on - strand, within MPMX19_00076 at 82.367 kb on - strand, within MPMX19_00076 at 82.628 kb on + strand at 82.628 kb on + strand at 82.628 kb on + strand at 82.628 kb on + strand at 82.628 kb on + strand at 82.628 kb on + strand at 82.628 kb on + strand at 82.628 kb on + strand at 82.629 kb on - strand at 82.629 kb on - strand at 82.629 kb on - strand at 82.629 kb on - strand at 82.629 kb on - strand at 82.629 kb on - strand at 83.122 kb on + strand, within MPMX19_00077 at 83.122 kb on + strand, within MPMX19_00077 at 83.122 kb on + strand, within MPMX19_00077 at 83.122 kb on + strand, within MPMX19_00077 at 83.122 kb on + strand, within MPMX19_00077 at 83.122 kb on + strand, within MPMX19_00077 at 83.122 kb on + strand, within MPMX19_00077 at 83.122 kb on + strand, within MPMX19_00077 at 83.122 kb on + strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.123 kb on - strand, within MPMX19_00077 at 83.230 kb on + strand, within MPMX19_00077 at 83.230 kb on + strand, within MPMX19_00077 at 83.230 kb on + strand, within MPMX19_00077 at 83.230 kb on + strand, within MPMX19_00077 at 83.230 kb on + strand, within MPMX19_00077 at 83.230 kb on + strand, within MPMX19_00077 at 83.230 kb on + strand, within MPMX19_00077 at 83.231 kb on - strand, within MPMX19_00077 at 83.231 kb on - strand, within MPMX19_00077 at 83.231 kb on - strand, within MPMX19_00077 at 83.305 kb on + strand at 83.305 kb on + strand at 83.305 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.396 kb on + strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.397 kb on - strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.400 kb on + strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.401 kb on - strand at 83.707 kb on + strand, within MPMX19_00078 at 83.707 kb on + strand, within MPMX19_00078 at 83.707 kb on + strand, within MPMX19_00078 at 83.707 kb on + strand, within MPMX19_00078 at 83.708 kb on - strand, within MPMX19_00078 at 83.708 kb on - strand, within MPMX19_00078 at 83.708 kb on - strand, within MPMX19_00078 at 83.708 kb on - strand, within MPMX19_00078 at 83.708 kb on - strand, within MPMX19_00078 at 83.708 kb on - strand, within MPMX19_00078 at 83.708 kb on - strand, within MPMX19_00078 at 83.728 kb on + strand, within MPMX19_00078 at 83.728 kb on + strand, within MPMX19_00078 at 83.728 kb on + strand, within MPMX19_00078 at 83.729 kb on - strand, within MPMX19_00078 at 83.752 kb on + strand, within MPMX19_00078 at 83.828 kb on + strand, within MPMX19_00078 at 83.828 kb on + strand, within MPMX19_00078 at 83.828 kb on + strand, within MPMX19_00078 at 83.828 kb on + strand, within MPMX19_00078 at 83.829 kb on - strand, within MPMX19_00078 at 83.829 kb on - strand, within MPMX19_00078 at 83.829 kb on - strand, within MPMX19_00078 at 83.829 kb on - strand, within MPMX19_00078 at 83.829 kb on - strand, within MPMX19_00078 at 83.882 kb on - strand, within MPMX19_00078
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 81,791 + MPMX19_00076 0.48 +0.5 81,791 + MPMX19_00076 0.48 +2.1 81,791 + MPMX19_00076 0.48 +0.3 81,791 + MPMX19_00076 0.48 +0.1 81,791 + MPMX19_00076 0.48 +0.6 81,791 + MPMX19_00076 0.48 -0.9 81,791 + MPMX19_00076 0.48 -1.0 81,791 + MPMX19_00076 0.48 -0.0 81,791 + MPMX19_00076 0.48 -0.1 81,791 + MPMX19_00076 0.48 -1.4 81,791 + MPMX19_00076 0.48 -2.1 81,791 + MPMX19_00076 0.48 -1.8 81,791 + MPMX19_00076 0.48 -0.6 81,791 + MPMX19_00076 0.48 -0.5 81,791 + MPMX19_00076 0.48 -0.2 81,791 + MPMX19_00076 0.48 -0.4 81,791 + MPMX19_00076 0.48 +1.1 81,791 + MPMX19_00076 0.48 -2.0 81,791 + MPMX19_00076 0.48 -0.8 81,791 + MPMX19_00076 0.48 -0.1 81,792 - MPMX19_00076 0.48 -0.5 81,792 - MPMX19_00076 0.48 +0.6 81,792 - MPMX19_00076 0.48 -2.6 81,792 - MPMX19_00076 0.48 -0.1 81,792 - MPMX19_00076 0.48 +0.1 81,792 - MPMX19_00076 0.48 -0.2 81,792 - MPMX19_00076 0.48 +0.3 81,792 - MPMX19_00076 0.48 +0.4 81,792 - MPMX19_00076 0.48 +0.1 81,792 - MPMX19_00076 0.48 +0.4 81,792 - MPMX19_00076 0.48 +0.2 81,792 - MPMX19_00076 0.48 +1.3 81,792 - MPMX19_00076 0.48 -0.2 81,792 - MPMX19_00076 0.48 -0.4 81,792 - MPMX19_00076 0.48 -0.7 81,792 - MPMX19_00076 0.48 -1.4 81,792 - MPMX19_00076 0.48 -0.2 81,863 + MPMX19_00076 0.52 +0.3 81,863 + MPMX19_00076 0.52 -0.2 81,863 + MPMX19_00076 0.52 -1.5 81,863 + MPMX19_00076 0.52 -0.1 81,864 - MPMX19_00076 0.52 +0.2 81,864 - MPMX19_00076 0.52 +0.2 81,864 - MPMX19_00076 0.52 +0.3 81,881 + MPMX19_00076 0.53 -0.4 81,881 + MPMX19_00076 0.53 -1.9 81,882 - MPMX19_00076 0.53 -1.1 81,882 - MPMX19_00076 0.53 -0.0 82,016 + MPMX19_00076 0.60 +0.3 82,016 + MPMX19_00076 0.60 +0.2 82,016 + MPMX19_00076 0.60 +0.2 82,016 + MPMX19_00076 0.60 -1.7 82,016 + MPMX19_00076 0.60 -0.8 82,017 - MPMX19_00076 0.61 -1.1 82,017 - MPMX19_00076 0.61 +0.2 82,017 - MPMX19_00076 0.61 -2.1 82,017 - MPMX19_00076 0.61 -0.6 82,017 - MPMX19_00076 0.61 -1.1 82,017 - MPMX19_00076 0.61 +0.1 82,017 - MPMX19_00076 0.61 -0.3 82,241 + MPMX19_00076 0.73 -0.2 82,241 + MPMX19_00076 0.73 -0.1 82,241 + MPMX19_00076 0.73 -0.2 82,241 + MPMX19_00076 0.73 -0.1 82,241 + MPMX19_00076 0.73 +0.8 82,241 + MPMX19_00076 0.73 -0.4 82,242 - MPMX19_00076 0.73 -0.3 82,242 - MPMX19_00076 0.73 -0.8 82,242 - MPMX19_00076 0.73 +0.8 82,242 - MPMX19_00076 0.73 -0.1 82,242 - MPMX19_00076 0.73 +0.2 82,242 - MPMX19_00076 0.73 +0.5 82,242 - MPMX19_00076 0.73 -0.9 82,242 - MPMX19_00076 0.73 -0.9 82,366 + MPMX19_00076 0.80 -0.3 82,366 + MPMX19_00076 0.80 -0.1 82,366 + MPMX19_00076 0.80 +0.7 82,366 + MPMX19_00076 0.80 -0.1 82,366 + MPMX19_00076 0.80 -0.8 82,366 + MPMX19_00076 0.80 -0.8 82,367 - MPMX19_00076 0.80 -0.7 82,367 - MPMX19_00076 0.80 -1.9 82,367 - MPMX19_00076 0.80 -0.9 82,367 - MPMX19_00076 0.80 -2.3 82,628 + +1.2 82,628 + -1.2 82,628 + -0.6 82,628 + -0.3 82,628 + -1.1 82,628 + -1.2 82,628 + -0.1 82,628 + -0.8 82,629 - -1.2 82,629 - -0.2 82,629 - -0.7 82,629 - +0.3 82,629 - -0.9 82,629 - +0.3 83,122 + MPMX19_00077 0.67 -0.4 83,122 + MPMX19_00077 0.67 +0.1 83,122 + MPMX19_00077 0.67 -0.4 83,122 + MPMX19_00077 0.67 +0.9 83,122 + MPMX19_00077 0.67 -0.2 83,122 + MPMX19_00077 0.67 -0.7 83,122 + MPMX19_00077 0.67 +0.4 83,122 + MPMX19_00077 0.67 -1.2 83,122 + MPMX19_00077 0.67 +0.4 83,123 - MPMX19_00077 0.68 -1.4 83,123 - MPMX19_00077 0.68 -0.0 83,123 - MPMX19_00077 0.68 -0.9 83,123 - MPMX19_00077 0.68 +2.2 83,123 - MPMX19_00077 0.68 +0.4 83,123 - MPMX19_00077 0.68 -0.1 83,123 - MPMX19_00077 0.68 -1.8 83,123 - MPMX19_00077 0.68 +0.6 83,123 - MPMX19_00077 0.68 +1.2 83,123 - MPMX19_00077 0.68 +0.2 83,123 - MPMX19_00077 0.68 +1.6 83,123 - MPMX19_00077 0.68 -0.5 83,123 - MPMX19_00077 0.68 +1.5 83,123 - MPMX19_00077 0.68 +0.3 83,123 - MPMX19_00077 0.68 -0.5 83,123 - MPMX19_00077 0.68 -1.1 83,123 - MPMX19_00077 0.68 -2.1 83,123 - MPMX19_00077 0.68 +0.3 83,123 - MPMX19_00077 0.68 -0.1 83,230 + MPMX19_00077 0.84 -0.6 83,230 + MPMX19_00077 0.84 +0.9 83,230 + MPMX19_00077 0.84 +0.9 83,230 + MPMX19_00077 0.84 -0.1 83,230 + MPMX19_00077 0.84 -0.6 83,230 + MPMX19_00077 0.84 -1.3 83,230 + MPMX19_00077 0.84 +1.4 83,231 - MPMX19_00077 0.84 +0.5 83,231 - MPMX19_00077 0.84 -0.4 83,231 - MPMX19_00077 0.84 +0.3 83,305 + +0.1 83,305 + -1.8 83,305 + -0.4 83,396 + -0.5 83,396 + -0.6 83,396 + +1.0 83,396 + -0.3 83,396 + -0.2 83,396 + -0.8 83,396 + +0.4 83,396 + +1.4 83,396 + -0.4 83,396 + +1.2 83,396 + +0.6 83,396 + +0.8 83,396 + -1.3 83,396 + -0.6 83,396 + -0.9 83,396 + -0.8 83,396 + +0.2 83,396 + +0.1 83,396 + +0.1 83,396 + -1.3 83,396 + -0.9 83,396 + -2.8 83,396 + -1.2 83,396 + -0.2 83,396 + -1.2 83,396 + -0.5 83,396 + -0.2 83,396 + +0.2 83,397 - -0.0 83,397 - +1.2 83,397 - -1.5 83,397 - -0.4 83,397 - +0.1 83,397 - -0.7 83,397 - -1.8 83,397 - -1.4 83,397 - -1.5 83,397 - -0.5 83,397 - -1.2 83,397 - +0.4 83,397 - -1.4 83,397 - -0.3 83,397 - +0.5 83,397 - -1.9 83,397 - -0.4 83,397 - +0.1 83,397 - +0.6 83,397 - -0.9 83,397 - -1.1 83,397 - -0.6 83,397 - +1.0 83,397 - -0.2 83,400 + -1.2 83,400 + +0.5 83,400 + -0.7 83,400 + -0.4 83,400 + +0.1 83,400 + -0.8 83,400 + -0.2 83,400 + -0.9 83,400 + +0.4 83,400 + -0.5 83,400 + -1.0 83,400 + +0.6 83,400 + -0.5 83,400 + -1.2 83,401 - -0.9 83,401 - +0.1 83,401 - +0.1 83,401 - -0.4 83,401 - -2.4 83,401 - -1.9 83,401 - -0.4 83,401 - +0.2 83,401 - -0.0 83,401 - +0.1 83,401 - -1.1 83,401 - -0.7 83,401 - -0.3 83,707 + MPMX19_00078 0.31 -1.4 83,707 + MPMX19_00078 0.31 -1.2 83,707 + MPMX19_00078 0.31 -0.2 83,707 + MPMX19_00078 0.31 -0.5 83,708 - MPMX19_00078 0.31 -0.0 83,708 - MPMX19_00078 0.31 +1.1 83,708 - MPMX19_00078 0.31 +0.1 83,708 - MPMX19_00078 0.31 -0.4 83,708 - MPMX19_00078 0.31 -1.4 83,708 - MPMX19_00078 0.31 +1.6 83,708 - MPMX19_00078 0.31 -0.4 83,728 + MPMX19_00078 0.34 +0.9 83,728 + MPMX19_00078 0.34 +0.1 83,728 + MPMX19_00078 0.34 -0.6 83,729 - MPMX19_00078 0.34 -1.2 83,752 + MPMX19_00078 0.36 +0.6 83,828 + MPMX19_00078 0.44 -2.1 83,828 + MPMX19_00078 0.44 -0.1 83,828 + MPMX19_00078 0.44 -1.6 83,828 + MPMX19_00078 0.44 -0.6 83,829 - MPMX19_00078 0.45 -0.9 83,829 - MPMX19_00078 0.45 -0.4 83,829 - MPMX19_00078 0.45 -1.5 83,829 - MPMX19_00078 0.45 -0.1 83,829 - MPMX19_00078 0.45 +0.4 83,882 - MPMX19_00078 0.50 +0.4
Or see this region's nucleotide sequence