Strain Fitness in Pseudomonas sp. DMC3 around GFF887

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF886 and GFF887 are separated by 62 nucleotidesGFF887 and GFF888 are separated by 12 nucleotidesGFF888 and GFF889 are separated by 78 nucleotides GFF886 - O-acetyltransferase WecH, at 223,725 to 224,753 GFF886 GFF887 - hypothetical protein, at 224,816 to 225,238 GFF887 GFF888 - hypothetical protein, at 225,251 to 225,583 GFF888 GFF889 - hypothetical protein, at 225,662 to 225,871 GFF889 Position (kb) 224 225 226Strain fitness (log2 ratio) -3 -2 -1 0 1at 223.891 kb on + strand, within GFF886at 223.891 kb on + strand, within GFF886at 223.892 kb on - strand, within GFF886at 223.905 kb on - strand, within GFF886at 223.905 kb on - strand, within GFF886at 223.940 kb on - strand, within GFF886at 224.004 kb on + strand, within GFF886at 224.004 kb on + strand, within GFF886at 224.017 kb on - strand, within GFF886at 224.051 kb on + strand, within GFF886at 224.119 kb on + strand, within GFF886at 224.122 kb on + strand, within GFF886at 224.143 kb on + strand, within GFF886at 224.255 kb on - strand, within GFF886at 224.260 kb on + strand, within GFF886at 224.287 kb on - strand, within GFF886at 224.314 kb on - strand, within GFF886at 224.362 kb on + strand, within GFF886at 224.455 kb on - strand, within GFF886at 224.455 kb on - strand, within GFF886at 224.477 kb on - strand, within GFF886at 224.581 kb on + strand, within GFF886at 224.685 kb on - strandat 224.966 kb on + strand, within GFF887at 225.026 kb on + strand, within GFF887at 225.143 kb on + strand, within GFF887at 225.146 kb on + strand, within GFF887at 225.147 kb on - strand, within GFF887at 225.268 kb on + strandat 225.360 kb on - strand, within GFF888at 225.498 kb on + strand, within GFF888at 225.498 kb on + strand, within GFF888at 225.498 kb on + strand, within GFF888at 225.498 kb on + strand, within GFF888at 225.498 kb on + strand, within GFF888at 225.498 kb on + strand, within GFF888at 225.498 kb on + strand, within GFF888at 225.499 kb on - strand, within GFF888at 225.499 kb on - strand, within GFF888at 225.499 kb on - strand, within GFF888at 225.499 kb on - strand, within GFF888at 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.566 kb on + strandat 225.567 kb on - strandat 225.567 kb on - strandat 225.567 kb on - strandat 225.567 kb on - strandat 225.567 kb on - strandat 225.567 kb on - strandat 225.567 kb on - strandat 225.567 kb on - strandat 225.567 kb on - strandat 225.568 kb on + strandat 225.568 kb on + strandat 225.568 kb on + strandat 225.568 kb on + strandat 225.568 kb on + strandat 225.568 kb on + strandat 225.568 kb on + strandat 225.568 kb on + strandat 225.569 kb on - strandat 225.569 kb on - strandat 225.569 kb on - strandat 225.569 kb on - strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.570 kb on + strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.571 kb on - strandat 225.619 kb on + strandat 225.854 kb on + strandat 225.854 kb on + strandat 225.855 kb on - strandat 225.855 kb on - strandat 225.900 kb on + strandat 225.901 kb on - strandat 225.901 kb on - strandat 225.950 kb on + strandat 225.983 kb on + strandat 225.984 kb on - strandat 226.048 kb on - strandat 226.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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223,891 + GFF886 0.16 -0.6
223,891 + GFF886 0.16 -1.3
223,892 - GFF886 0.16 +0.3
223,905 - GFF886 0.17 -1.7
223,905 - GFF886 0.17 -0.4
223,940 - GFF886 0.21 +0.1
224,004 + GFF886 0.27 +0.7
224,004 + GFF886 0.27 -0.9
224,017 - GFF886 0.28 -0.6
224,051 + GFF886 0.32 +0.3
224,119 + GFF886 0.38 +0.8
224,122 + GFF886 0.39 -0.9
224,143 + GFF886 0.41 -0.5
224,255 - GFF886 0.52 -0.6
224,260 + GFF886 0.52 -0.9
224,287 - GFF886 0.55 -0.5
224,314 - GFF886 0.57 +0.3
224,362 + GFF886 0.62 +0.2
224,455 - GFF886 0.71 +0.2
224,455 - GFF886 0.71 -0.2
224,477 - GFF886 0.73 +0.1
224,581 + GFF886 0.83 -0.1
224,685 - +0.6
224,966 + GFF887 0.35 -0.3
225,026 + GFF887 0.50 -0.6
225,143 + GFF887 0.77 -0.7
225,146 + GFF887 0.78 -0.4
225,147 - GFF887 0.78 -1.0
225,268 + +0.1
225,360 - GFF888 0.33 +0.4
225,498 + GFF888 0.74 +0.1
225,498 + GFF888 0.74 +0.7
225,498 + GFF888 0.74 +0.0
225,498 + GFF888 0.74 +0.8
225,498 + GFF888 0.74 +0.5
225,498 + GFF888 0.74 +1.1
225,498 + GFF888 0.74 -1.2
225,499 - GFF888 0.74 -0.5
225,499 - GFF888 0.74 +0.1
225,499 - GFF888 0.74 +0.0
225,499 - GFF888 0.74 +0.2
225,566 + +1.6
225,566 + -1.7
225,566 + +1.0
225,566 + -0.1
225,566 + -0.3
225,566 + -0.3
225,566 + -1.1
225,566 + +0.2
225,566 + -0.6
225,566 + +0.3
225,566 + +0.4
225,566 + +0.2
225,566 + +0.7
225,566 + -0.6
225,566 + -1.1
225,566 + -0.5
225,566 + +1.2
225,567 - +0.7
225,567 - +0.0
225,567 - -0.1
225,567 - -0.0
225,567 - +0.1
225,567 - -0.0
225,567 - +0.0
225,567 - +0.0
225,567 - +0.1
225,568 + -0.0
225,568 + -0.7
225,568 + +0.9
225,568 + -0.6
225,568 + +0.1
225,568 + -0.1
225,568 + +0.3
225,568 + -0.0
225,569 - +0.5
225,569 - -0.1
225,569 - -3.1
225,569 - +1.6
225,570 + -0.2
225,570 + -0.4
225,570 + +0.4
225,570 + -0.8
225,570 + -0.6
225,570 + -1.0
225,571 - -0.1
225,571 - -0.0
225,571 - -0.1
225,619 + +0.3
225,854 + +0.5
225,854 + -0.7
225,855 - +0.1
225,855 - +0.1
225,900 + +1.1
225,901 - +0.3
225,901 - -0.1
225,950 + -0.4
225,983 + +0.1
225,984 - -0.5
226,048 - +0.3
226,235 - -0.5

Or see this region's nucleotide sequence