Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF85 and GFF86 overlap by 4 nucleotides GFF86 and GFF87 are separated by 346 nucleotides GFF87 and GFF88 overlap by 4 nucleotides
GFF85 - hypothetical protein, at 98,425 to 100,359
GFF85
GFF86 - DNA polymerase III PolC-type, at 100,356 to 101,063
GFF86
GFF87 - putative RNA polymerase sigma factor FecI, at 101,410 to 101,886
GFF87
GFF88 - Protein FecR, at 101,883 to 102,857
GFF88
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.705 kb on + strand, within GFF85 at 99.705 kb on + strand, within GFF85 at 99.705 kb on + strand, within GFF85 at 99.705 kb on + strand, within GFF85 at 99.706 kb on - strand, within GFF85 at 99.832 kb on + strand, within GFF85 at 99.832 kb on + strand, within GFF85 at 100.135 kb on - strand, within GFF85 at 100.135 kb on - strand, within GFF85 at 100.168 kb on + strand at 100.169 kb on - strand at 100.180 kb on + strand at 100.180 kb on + strand at 100.181 kb on - strand at 100.181 kb on - strand at 100.181 kb on - strand at 100.181 kb on - strand at 100.244 kb on - strand at 100.244 kb on - strand at 100.244 kb on - strand at 100.355 kb on + strand at 100.355 kb on + strand at 100.355 kb on + strand at 100.356 kb on - strand at 100.511 kb on + strand, within GFF86 at 100.512 kb on - strand, within GFF86 at 100.512 kb on - strand, within GFF86 at 100.793 kb on + strand, within GFF86 at 100.793 kb on + strand, within GFF86 at 100.793 kb on + strand, within GFF86 at 100.793 kb on + strand, within GFF86 at 100.794 kb on - strand, within GFF86 at 100.794 kb on - strand, within GFF86 at 100.794 kb on - strand, within GFF86 at 100.794 kb on - strand, within GFF86 at 100.794 kb on - strand, within GFF86 at 100.840 kb on + strand, within GFF86 at 100.840 kb on + strand, within GFF86 at 100.840 kb on + strand, within GFF86 at 100.841 kb on - strand, within GFF86 at 100.841 kb on - strand, within GFF86 at 100.841 kb on - strand, within GFF86 at 100.841 kb on - strand, within GFF86 at 100.841 kb on - strand, within GFF86 at 100.995 kb on + strand at 100.996 kb on - strand at 100.996 kb on - strand at 101.061 kb on + strand at 101.140 kb on + strand at 101.140 kb on + strand at 101.140 kb on + strand at 101.140 kb on + strand at 101.141 kb on - strand at 101.141 kb on - strand at 101.141 kb on - strand at 101.167 kb on + strand at 101.186 kb on - strand at 101.329 kb on + strand at 101.338 kb on + strand at 101.339 kb on - strand at 101.413 kb on + strand at 101.413 kb on + strand at 101.414 kb on - strand at 101.620 kb on + strand, within GFF87 at 101.620 kb on + strand, within GFF87 at 101.621 kb on - strand, within GFF87 at 101.755 kb on + strand, within GFF87 at 101.755 kb on + strand, within GFF87 at 101.755 kb on + strand, within GFF87 at 101.755 kb on + strand, within GFF87 at 101.755 kb on + strand, within GFF87 at 101.756 kb on - strand, within GFF87 at 101.756 kb on - strand, within GFF87 at 101.756 kb on - strand, within GFF87 at 101.756 kb on - strand, within GFF87 at 101.757 kb on + strand, within GFF87 at 101.758 kb on - strand, within GFF87 at 101.758 kb on - strand, within GFF87 at 101.857 kb on + strand at 101.857 kb on + strand at 101.857 kb on + strand at 101.857 kb on + strand at 101.857 kb on + strand at 101.857 kb on + strand at 101.857 kb on + strand at 101.858 kb on - strand at 101.858 kb on - strand at 101.858 kb on - strand at 101.858 kb on - strand at 101.870 kb on - strand at 101.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 99,705 + GFF85 0.66 +0.9 99,705 + GFF85 0.66 +0.2 99,705 + GFF85 0.66 +1.5 99,705 + GFF85 0.66 -1.6 99,706 - GFF85 0.66 +0.2 99,832 + GFF85 0.73 +1.4 99,832 + GFF85 0.73 +0.6 100,135 - GFF85 0.88 +0.6 100,135 - GFF85 0.88 +0.7 100,168 + -1.0 100,169 - +0.6 100,180 + -1.1 100,180 + -0.4 100,181 - +1.0 100,181 - +0.7 100,181 - +1.4 100,181 - +0.9 100,244 - -0.6 100,244 - -0.6 100,244 - +0.7 100,355 + -1.8 100,355 + -0.7 100,355 + -0.3 100,356 - -1.1 100,511 + GFF86 0.22 -0.2 100,512 - GFF86 0.22 +0.7 100,512 - GFF86 0.22 -0.7 100,793 + GFF86 0.62 -1.1 100,793 + GFF86 0.62 +0.0 100,793 + GFF86 0.62 +1.0 100,793 + GFF86 0.62 -1.1 100,794 - GFF86 0.62 +0.4 100,794 - GFF86 0.62 -0.7 100,794 - GFF86 0.62 -1.4 100,794 - GFF86 0.62 +0.4 100,794 - GFF86 0.62 -0.0 100,840 + GFF86 0.68 -0.6 100,840 + GFF86 0.68 +0.0 100,840 + GFF86 0.68 -1.7 100,841 - GFF86 0.69 +0.1 100,841 - GFF86 0.69 +0.5 100,841 - GFF86 0.69 +0.3 100,841 - GFF86 0.69 -0.3 100,841 - GFF86 0.69 +0.1 100,995 + +0.8 100,996 - +0.2 100,996 - -0.6 101,061 + +0.3 101,140 + +0.6 101,140 + -0.8 101,140 + -0.2 101,140 + -0.0 101,141 - +1.0 101,141 - +0.0 101,141 - -0.8 101,167 + -0.5 101,186 - -0.1 101,329 + -0.1 101,338 + +0.3 101,339 - -0.5 101,413 + +0.5 101,413 + -0.3 101,414 - -0.7 101,620 + GFF87 0.44 +1.0 101,620 + GFF87 0.44 -0.3 101,621 - GFF87 0.44 -0.4 101,755 + GFF87 0.72 +0.3 101,755 + GFF87 0.72 -0.4 101,755 + GFF87 0.72 -0.5 101,755 + GFF87 0.72 -0.3 101,755 + GFF87 0.72 -0.1 101,756 - GFF87 0.73 -0.2 101,756 - GFF87 0.73 -0.1 101,756 - GFF87 0.73 -0.2 101,756 - GFF87 0.73 -0.0 101,757 + GFF87 0.73 +1.3 101,758 - GFF87 0.73 +0.4 101,758 - GFF87 0.73 +0.3 101,857 + -2.2 101,857 + -2.4 101,857 + +2.1 101,857 + -0.8 101,857 + -0.5 101,857 + -0.2 101,857 + +0.2 101,858 - -0.3 101,858 - -1.7 101,858 - -0.5 101,858 - +0.6 101,870 - -0.3 101,870 - -0.7
Or see this region's nucleotide sequence