Strain Fitness in Pseudomonas sp. DMC3 around GFF857

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF854 and GFF855 are separated by 10 nucleotidesGFF855 and GFF856 are separated by 2 nucleotidesGFF856 and GFF857 are separated by 1 nucleotidesGFF857 and GFF858 overlap by 4 nucleotidesGFF858 and GFF859 are separated by 51 nucleotidesGFF859 and GFF860 are separated by 85 nucleotides GFF854 - hypothetical protein, at 200,471 to 200,776 GFF854 GFF855 - hypothetical protein, at 200,787 to 201,164 GFF855 GFF856 - hypothetical protein, at 201,167 to 201,559 GFF856 GFF857 - hypothetical protein, at 201,561 to 202,145 GFF857 GFF858 - hypothetical protein, at 202,142 to 202,558 GFF858 GFF859 - hypothetical protein, at 202,610 to 202,870 GFF859 GFF860 - hypothetical protein, at 202,956 to 203,603 GFF860 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1 2at 200.606 kb on + strand, within GFF854at 200.606 kb on + strand, within GFF854at 200.606 kb on + strand, within GFF854at 200.606 kb on + strand, within GFF854at 200.606 kb on + strand, within GFF854at 200.606 kb on + strand, within GFF854at 200.606 kb on + strand, within GFF854at 200.606 kb on + strand, within GFF854at 200.606 kb on + strand, within GFF854at 200.606 kb on + strand, within GFF854at 200.607 kb on - strand, within GFF854at 200.607 kb on - strand, within GFF854at 200.607 kb on - strand, within GFF854at 200.607 kb on - strand, within GFF854at 200.607 kb on - strand, within GFF854at 200.607 kb on - strand, within GFF854at 200.775 kb on - strandat 200.775 kb on - strandat 200.989 kb on - strand, within GFF855at 201.060 kb on + strand, within GFF855at 201.060 kb on + strand, within GFF855at 201.061 kb on - strand, within GFF855at 201.061 kb on - strand, within GFF855at 201.061 kb on - strand, within GFF855at 201.075 kb on - strand, within GFF855at 201.172 kb on + strandat 201.172 kb on + strandat 201.173 kb on - strandat 201.173 kb on - strandat 201.173 kb on - strandat 201.258 kb on + strand, within GFF856at 201.278 kb on + strand, within GFF856at 201.278 kb on + strand, within GFF856at 201.278 kb on + strand, within GFF856at 201.279 kb on - strand, within GFF856at 201.279 kb on - strand, within GFF856at 201.279 kb on - strand, within GFF856at 201.279 kb on - strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.323 kb on + strand, within GFF856at 201.324 kb on - strand, within GFF856at 201.324 kb on - strand, within GFF856at 201.324 kb on - strand, within GFF856at 201.324 kb on - strand, within GFF856at 201.324 kb on - strand, within GFF856at 201.324 kb on - strand, within GFF856at 201.324 kb on - strand, within GFF856at 201.351 kb on - strand, within GFF856at 201.351 kb on - strand, within GFF856at 201.351 kb on - strand, within GFF856at 201.402 kb on + strand, within GFF856at 201.402 kb on + strand, within GFF856at 201.402 kb on + strand, within GFF856at 201.403 kb on - strand, within GFF856at 201.403 kb on - strand, within GFF856at 201.403 kb on - strand, within GFF856at 201.650 kb on - strand, within GFF857at 201.650 kb on - strand, within GFF857at 201.861 kb on + strand, within GFF857at 201.861 kb on + strand, within GFF857at 201.982 kb on + strand, within GFF857at 202.008 kb on + strand, within GFF857at 202.008 kb on + strand, within GFF857at 202.008 kb on + strand, within GFF857at 202.009 kb on - strand, within GFF857at 202.009 kb on - strand, within GFF857at 202.030 kb on - strand, within GFF857at 202.141 kb on + strandat 202.142 kb on - strandat 202.142 kb on - strandat 202.241 kb on + strand, within GFF858at 202.241 kb on + strand, within GFF858at 202.265 kb on + strand, within GFF858at 202.266 kb on - strand, within GFF858at 202.331 kb on + strand, within GFF858at 202.331 kb on + strand, within GFF858at 202.334 kb on - strand, within GFF858at 202.378 kb on + strand, within GFF858at 202.379 kb on - strand, within GFF858at 202.430 kb on + strand, within GFF858at 202.430 kb on + strand, within GFF858at 202.430 kb on + strand, within GFF858at 202.431 kb on - strand, within GFF858at 202.459 kb on - strand, within GFF858at 202.463 kb on - strand, within GFF858at 202.479 kb on + strand, within GFF858at 202.479 kb on + strand, within GFF858at 202.479 kb on + strand, within GFF858at 202.479 kb on + strand, within GFF858at 202.480 kb on - strand, within GFF858at 202.480 kb on - strand, within GFF858at 202.480 kb on - strand, within GFF858at 202.480 kb on - strand, within GFF858at 202.480 kb on - strand, within GFF858at 202.515 kb on - strand, within GFF858at 202.515 kb on - strand, within GFF858at 202.560 kb on + strandat 202.570 kb on + strandat 202.571 kb on - strandat 202.593 kb on + strandat 202.593 kb on + strandat 202.593 kb on + strandat 202.598 kb on - strandat 202.598 kb on - strandat 202.622 kb on - strandat 202.635 kb on + strandat 202.690 kb on + strand, within GFF859at 202.690 kb on + strand, within GFF859at 202.735 kb on + strand, within GFF859at 202.736 kb on - strand, within GFF859at 202.760 kb on + strand, within GFF859at 202.760 kb on + strand, within GFF859at 202.884 kb on + strandat 202.884 kb on + strandat 203.057 kb on + strand, within GFF860at 203.058 kb on - strand, within GFF860at 203.058 kb on - strand, within GFF860

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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200,606 + GFF854 0.44 +0.2
200,606 + GFF854 0.44 -1.8
200,606 + GFF854 0.44 +0.5
200,606 + GFF854 0.44 +0.1
200,606 + GFF854 0.44 -1.5
200,606 + GFF854 0.44 +0.6
200,606 + GFF854 0.44 -0.9
200,606 + GFF854 0.44 -0.5
200,606 + GFF854 0.44 +0.1
200,606 + GFF854 0.44 -0.3
200,607 - GFF854 0.44 +0.3
200,607 - GFF854 0.44 -0.3
200,607 - GFF854 0.44 -0.4
200,607 - GFF854 0.44 -0.2
200,607 - GFF854 0.44 -0.1
200,607 - GFF854 0.44 -0.5
200,775 - -0.5
200,775 - -0.5
200,989 - GFF855 0.53 -0.2
201,060 + GFF855 0.72 +1.1
201,060 + GFF855 0.72 -0.8
201,061 - GFF855 0.72 -0.8
201,061 - GFF855 0.72 -0.1
201,061 - GFF855 0.72 +0.2
201,075 - GFF855 0.76 +0.6
201,172 + -0.9
201,172 + +1.3
201,173 - -0.8
201,173 - -0.3
201,173 - -1.3
201,258 + GFF856 0.23 +0.5
201,278 + GFF856 0.28 -1.1
201,278 + GFF856 0.28 -0.1
201,278 + GFF856 0.28 +0.4
201,279 - GFF856 0.28 +0.1
201,279 - GFF856 0.28 -0.6
201,279 - GFF856 0.28 -1.1
201,279 - GFF856 0.28 -0.2
201,323 + GFF856 0.40 -0.6
201,323 + GFF856 0.40 -0.3
201,323 + GFF856 0.40 -0.4
201,323 + GFF856 0.40 -0.5
201,323 + GFF856 0.40 +0.5
201,323 + GFF856 0.40 +0.6
201,323 + GFF856 0.40 +0.8
201,323 + GFF856 0.40 -0.1
201,323 + GFF856 0.40 +0.5
201,323 + GFF856 0.40 +0.1
201,324 - GFF856 0.40 +0.2
201,324 - GFF856 0.40 +0.2
201,324 - GFF856 0.40 -0.5
201,324 - GFF856 0.40 +0.1
201,324 - GFF856 0.40 -0.4
201,324 - GFF856 0.40 -1.8
201,324 - GFF856 0.40 -0.6
201,351 - GFF856 0.47 +0.5
201,351 - GFF856 0.47 -1.9
201,351 - GFF856 0.47 -0.8
201,402 + GFF856 0.60 -0.2
201,402 + GFF856 0.60 +0.9
201,402 + GFF856 0.60 -0.3
201,403 - GFF856 0.60 -0.2
201,403 - GFF856 0.60 +0.2
201,403 - GFF856 0.60 -0.3
201,650 - GFF857 0.15 -1.5
201,650 - GFF857 0.15 -0.5
201,861 + GFF857 0.51 +0.7
201,861 + GFF857 0.51 +0.8
201,982 + GFF857 0.72 -1.2
202,008 + GFF857 0.76 -0.9
202,008 + GFF857 0.76 +0.3
202,008 + GFF857 0.76 -0.8
202,009 - GFF857 0.77 -1.3
202,009 - GFF857 0.77 -0.1
202,030 - GFF857 0.80 +0.8
202,141 + -0.8
202,142 - -0.7
202,142 - +0.6
202,241 + GFF858 0.24 -1.6
202,241 + GFF858 0.24 +1.5
202,265 + GFF858 0.29 -1.1
202,266 - GFF858 0.30 +1.4
202,331 + GFF858 0.45 -2.4
202,331 + GFF858 0.45 -0.6
202,334 - GFF858 0.46 -0.5
202,378 + GFF858 0.57 -1.5
202,379 - GFF858 0.57 -1.2
202,430 + GFF858 0.69 +1.7
202,430 + GFF858 0.69 +0.6
202,430 + GFF858 0.69 +0.4
202,431 - GFF858 0.69 +0.3
202,459 - GFF858 0.76 +0.4
202,463 - GFF858 0.77 -0.7
202,479 + GFF858 0.81 -0.1
202,479 + GFF858 0.81 +0.5
202,479 + GFF858 0.81 +0.6
202,479 + GFF858 0.81 +0.3
202,480 - GFF858 0.81 -0.5
202,480 - GFF858 0.81 -0.6
202,480 - GFF858 0.81 +0.6
202,480 - GFF858 0.81 +0.0
202,480 - GFF858 0.81 -1.6
202,515 - GFF858 0.89 -0.3
202,515 - GFF858 0.89 -0.5
202,560 + -0.1
202,570 + -0.6
202,571 - +1.8
202,593 + -1.5
202,593 + -1.2
202,593 + -0.2
202,598 - +0.3
202,598 - -0.4
202,622 - +0.0
202,635 + -0.5
202,690 + GFF859 0.31 -0.9
202,690 + GFF859 0.31 +1.7
202,735 + GFF859 0.48 -0.2
202,736 - GFF859 0.48 +1.1
202,760 + GFF859 0.57 -1.8
202,760 + GFF859 0.57 -0.4
202,884 + -0.7
202,884 + +0.8
203,057 + GFF860 0.16 -0.2
203,058 - GFF860 0.16 +1.2
203,058 - GFF860 0.16 +0.7

Or see this region's nucleotide sequence