Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF850 and GFF851 are separated by 8 nucleotides GFF851 and GFF852 are separated by 27 nucleotides GFF852 and GFF853 are separated by 3 nucleotides
GFF850 - hypothetical protein, at 197,069 to 198,115
GFF850
GFF851 - hypothetical protein, at 198,124 to 198,609
GFF851
GFF852 - hypothetical protein, at 198,637 to 199,431
GFF852
GFF853 - hypothetical protein, at 199,435 to 200,412
GFF853
Position (kb) 198
199
200 Strain fitness (log2 ratio) -2
-1
0
1 at 197.880 kb on + strand, within GFF850 at 197.881 kb on - strand, within GFF850 at 197.898 kb on - strand, within GFF850 at 197.898 kb on - strand, within GFF850 at 197.898 kb on - strand, within GFF850 at 197.900 kb on + strand, within GFF850 at 198.091 kb on + strand at 198.091 kb on + strand at 198.091 kb on + strand at 198.092 kb on - strand at 198.092 kb on - strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.123 kb on + strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.124 kb on - strand at 198.200 kb on - strand, within GFF851 at 198.209 kb on - strand, within GFF851 at 198.209 kb on - strand, within GFF851 at 198.254 kb on + strand, within GFF851 at 198.315 kb on + strand, within GFF851 at 198.315 kb on + strand, within GFF851 at 198.316 kb on - strand, within GFF851 at 198.431 kb on - strand, within GFF851 at 198.544 kb on + strand, within GFF851 at 198.545 kb on - strand, within GFF851 at 198.545 kb on - strand, within GFF851 at 198.545 kb on - strand, within GFF851 at 198.545 kb on - strand, within GFF851 at 198.607 kb on + strand at 198.650 kb on + strand at 198.951 kb on + strand, within GFF852 at 198.954 kb on + strand, within GFF852 at 198.954 kb on + strand, within GFF852 at 198.986 kb on - strand, within GFF852 at 199.048 kb on + strand, within GFF852 at 199.352 kb on - strand at 199.352 kb on - strand at 199.430 kb on - strand at 199.430 kb on - strand at 199.474 kb on + strand at 199.475 kb on - strand at 199.475 kb on - strand at 199.475 kb on - strand at 199.475 kb on - strand at 199.477 kb on + strand at 199.477 kb on + strand at 199.477 kb on + strand at 199.477 kb on + strand at 199.477 kb on + strand at 199.477 kb on + strand at 199.477 kb on + strand at 199.477 kb on + strand at 199.477 kb on + strand at 199.477 kb on + strand at 199.478 kb on - strand at 199.478 kb on - strand at 199.478 kb on - strand at 199.478 kb on - strand at 199.478 kb on - strand at 199.478 kb on - strand at 199.522 kb on + strand at 199.522 kb on + strand at 199.710 kb on - strand, within GFF853 at 199.710 kb on - strand, within GFF853 at 199.711 kb on + strand, within GFF853 at 199.711 kb on + strand, within GFF853 at 199.712 kb on - strand, within GFF853 at 199.712 kb on - strand, within GFF853 at 199.726 kb on + strand, within GFF853 at 199.801 kb on + strand, within GFF853 at 199.802 kb on - strand, within GFF853 at 200.069 kb on - strand, within GFF853 at 200.069 kb on - strand, within GFF853 at 200.108 kb on - strand, within GFF853 at 200.122 kb on + strand, within GFF853 at 200.123 kb on - strand, within GFF853 at 200.123 kb on - strand, within GFF853 at 200.254 kb on + strand, within GFF853 at 200.254 kb on + strand, within GFF853 at 200.255 kb on - strand, within GFF853 at 200.255 kb on - strand, within GFF853 at 200.255 kb on - strand, within GFF853 at 200.255 kb on - strand, within GFF853 at 200.326 kb on + strand at 200.326 kb on + strand at 200.426 kb on + strand at 200.426 kb on + strand at 200.427 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 197,880 + GFF850 0.77 -0.6 197,881 - GFF850 0.78 +0.1 197,898 - GFF850 0.79 +1.2 197,898 - GFF850 0.79 -0.6 197,898 - GFF850 0.79 -0.8 197,900 + GFF850 0.79 -0.9 198,091 + -0.1 198,091 + -1.0 198,091 + +0.6 198,092 - -1.7 198,092 - -0.1 198,123 + -0.5 198,123 + +0.5 198,123 + -0.6 198,123 + -0.1 198,123 + +0.8 198,123 + +0.4 198,123 + +0.5 198,123 + +1.5 198,123 + -0.4 198,123 + -1.1 198,123 + -0.2 198,124 - +0.8 198,124 - -0.7 198,124 - +0.3 198,124 - +0.1 198,124 - -0.4 198,124 - -0.2 198,124 - -1.1 198,124 - +0.7 198,124 - +0.2 198,124 - -0.2 198,124 - +0.3 198,124 - -0.1 198,124 - -0.4 198,124 - -0.7 198,200 - GFF851 0.16 -0.5 198,209 - GFF851 0.17 -0.1 198,209 - GFF851 0.17 +0.4 198,254 + GFF851 0.27 -0.6 198,315 + GFF851 0.39 -0.1 198,315 + GFF851 0.39 +0.5 198,316 - GFF851 0.40 +0.4 198,431 - GFF851 0.63 +1.1 198,544 + GFF851 0.86 -2.2 198,545 - GFF851 0.87 +0.9 198,545 - GFF851 0.87 -0.1 198,545 - GFF851 0.87 -1.8 198,545 - GFF851 0.87 +1.1 198,607 + +0.4 198,650 + -0.1 198,951 + GFF852 0.39 -1.1 198,954 + GFF852 0.40 -0.3 198,954 + GFF852 0.40 -1.1 198,986 - GFF852 0.44 +0.4 199,048 + GFF852 0.52 -2.1 199,352 - +0.8 199,352 - -0.2 199,430 - +0.5 199,430 - -0.1 199,474 + -0.2 199,475 - -0.1 199,475 - +0.2 199,475 - +0.1 199,475 - -0.7 199,477 + +0.5 199,477 + -0.2 199,477 + -0.5 199,477 + +1.3 199,477 + +0.6 199,477 + -0.3 199,477 + -0.5 199,477 + +1.0 199,477 + -0.1 199,477 + -0.6 199,478 - -0.1 199,478 - -0.0 199,478 - -0.1 199,478 - -0.8 199,478 - -0.5 199,478 - -2.5 199,522 + -0.3 199,522 + +0.1 199,710 - GFF853 0.28 -0.4 199,710 - GFF853 0.28 -1.9 199,711 + GFF853 0.28 -0.5 199,711 + GFF853 0.28 -0.5 199,712 - GFF853 0.28 +0.1 199,712 - GFF853 0.28 +0.2 199,726 + GFF853 0.30 -2.2 199,801 + GFF853 0.37 +1.3 199,802 - GFF853 0.38 -0.3 200,069 - GFF853 0.65 -0.1 200,069 - GFF853 0.65 -0.2 200,108 - GFF853 0.69 -0.3 200,122 + GFF853 0.70 +0.5 200,123 - GFF853 0.70 -0.9 200,123 - GFF853 0.70 -1.7 200,254 + GFF853 0.84 +0.5 200,254 + GFF853 0.84 +0.5 200,255 - GFF853 0.84 -0.6 200,255 - GFF853 0.84 -0.3 200,255 - GFF853 0.84 -0.2 200,255 - GFF853 0.84 +0.0 200,326 + -0.1 200,326 + +0.8 200,426 + -0.0 200,426 + +0.5 200,427 - -0.3
Or see this region's nucleotide sequence