Strain Fitness in Pseudomonas sp. DMC3 around GFF716

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF714 and GFF715 overlap by 8 nucleotidesGFF715 and GFF716 are separated by 23 nucleotidesGFF716 and GFF717 are separated by 137 nucleotidesGFF717 and GFF718 overlap by 59 nucleotides GFF714 - hypothetical protein, at 31,817 to 32,500 GFF714 GFF715 - hypothetical protein, at 32,493 to 32,705 GFF715 GFF716 - putative copper-importing P-type ATPase A, at 32,729 to 35,179 GFF716 GFF717 - hypothetical protein, at 35,317 to 35,928 GFF717 GFF718 - hypothetical protein, at 35,870 to 37,285 GFF718 Position (kb) 32 33 34 35 36Strain fitness (log2 ratio) -1 0 1 2at 31.762 kb on - strandat 31.783 kb on + strandat 31.783 kb on + strandat 31.783 kb on + strandat 31.783 kb on + strandat 31.784 kb on - strandat 31.818 kb on + strandat 31.818 kb on + strandat 31.819 kb on - strandat 31.863 kb on - strandat 32.322 kb on + strand, within GFF714at 32.346 kb on + strand, within GFF714at 32.346 kb on + strand, within GFF714at 32.346 kb on + strand, within GFF714at 32.347 kb on - strand, within GFF714at 32.347 kb on - strand, within GFF714at 32.347 kb on - strand, within GFF714at 32.647 kb on + strand, within GFF715at 32.648 kb on - strand, within GFF715at 32.648 kb on - strand, within GFF715at 32.648 kb on - strand, within GFF715at 32.648 kb on - strand, within GFF715at 32.692 kb on + strandat 32.692 kb on + strandat 32.693 kb on - strandat 32.890 kb on + strandat 32.891 kb on - strandat 32.891 kb on - strandat 32.901 kb on + strandat 32.901 kb on + strandat 33.485 kb on + strand, within GFF716at 34.166 kb on + strand, within GFF716at 34.356 kb on + strand, within GFF716at 34.401 kb on + strand, within GFF716at 34.402 kb on - strand, within GFF716at 34.402 kb on - strand, within GFF716at 34.402 kb on - strand, within GFF716at 34.498 kb on - strand, within GFF716at 34.699 kb on - strand, within GFF716at 34.776 kb on - strand, within GFF716at 34.954 kb on - strandat 35.157 kb on + strandat 35.158 kb on - strandat 35.309 kb on + strandat 35.319 kb on - strandat 35.484 kb on - strand, within GFF717at 35.484 kb on - strand, within GFF717at 35.708 kb on + strand, within GFF717at 35.708 kb on + strand, within GFF717at 35.709 kb on - strand, within GFF717at 35.709 kb on - strand, within GFF717at 35.709 kb on - strand, within GFF717at 35.711 kb on + strand, within GFF717at 35.712 kb on - strand, within GFF717at 35.712 kb on - strand, within GFF717at 35.712 kb on - strand, within GFF717at 35.712 kb on - strand, within GFF717at 35.825 kb on + strand, within GFF717at 35.825 kb on + strand, within GFF717at 35.826 kb on - strand, within GFF717at 36.090 kb on + strand, within GFF718at 36.090 kb on + strand, within GFF718at 36.091 kb on - strand, within GFF718at 36.091 kb on - strand, within GFF718

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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31,762 - -0.5
31,783 + +0.1
31,783 + -1.4
31,783 + -1.2
31,783 + -0.1
31,784 - -0.5
31,818 + +0.4
31,818 + +0.0
31,819 - +0.5
31,863 - -0.5
32,322 + GFF714 0.74 +0.5
32,346 + GFF714 0.77 +0.5
32,346 + GFF714 0.77 -1.1
32,346 + GFF714 0.77 +1.2
32,347 - GFF714 0.77 -1.6
32,347 - GFF714 0.77 +0.2
32,347 - GFF714 0.77 -0.8
32,647 + GFF715 0.72 +1.8
32,648 - GFF715 0.73 +0.9
32,648 - GFF715 0.73 +0.3
32,648 - GFF715 0.73 -0.6
32,648 - GFF715 0.73 -0.1
32,692 + -1.1
32,692 + +0.9
32,693 - +0.7
32,890 + +0.9
32,891 - -0.1
32,891 - +0.9
32,901 + +1.5
32,901 + +0.5
33,485 + GFF716 0.31 +0.8
34,166 + GFF716 0.59 +0.3
34,356 + GFF716 0.66 -0.8
34,401 + GFF716 0.68 -1.5
34,402 - GFF716 0.68 -0.5
34,402 - GFF716 0.68 -0.5
34,402 - GFF716 0.68 +1.2
34,498 - GFF716 0.72 -0.1
34,699 - GFF716 0.80 -0.5
34,776 - GFF716 0.84 -1.1
34,954 - +0.2
35,157 + -0.5
35,158 - +0.2
35,309 + -0.3
35,319 - -0.1
35,484 - GFF717 0.27 -0.1
35,484 - GFF717 0.27 -0.5
35,708 + GFF717 0.64 -1.1
35,708 + GFF717 0.64 -0.1
35,709 - GFF717 0.64 -0.8
35,709 - GFF717 0.64 -0.5
35,709 - GFF717 0.64 -1.3
35,711 + GFF717 0.64 -0.1
35,712 - GFF717 0.65 +1.5
35,712 - GFF717 0.65 -1.2
35,712 - GFF717 0.65 -0.8
35,712 - GFF717 0.65 +0.2
35,825 + GFF717 0.83 -0.5
35,825 + GFF717 0.83 +0.3
35,826 - GFF717 0.83 +0.7
36,090 + GFF718 0.16 +1.1
36,090 + GFF718 0.16 +0.1
36,091 - GFF718 0.16 +0.3
36,091 - GFF718 0.16 -1.0

Or see this region's nucleotide sequence