Strain Fitness in Pseudomonas sp. DMC3 around GFF677

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF676 and GFF677 overlap by 1 nucleotidesGFF677 and GFF678 are separated by 58 nucleotides GFF676 - Tryptophan synthase beta chain, at 745,605 to 746,837 GFF676 GFF677 - Tryptophan synthase alpha chain, at 746,837 to 747,646 GFF677 GFF678 - hypothetical protein, at 747,705 to 749,666 GFF678 Position (kb) 746 747 748Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 745.861 kb on - strand, within GFF676at 745.861 kb on - strand, within GFF676at 745.861 kb on - strand, within GFF676at 746.037 kb on + strand, within GFF676at 746.037 kb on + strand, within GFF676at 746.037 kb on + strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.038 kb on - strand, within GFF676at 746.196 kb on + strand, within GFF676at 746.196 kb on + strand, within GFF676at 746.229 kb on + strand, within GFF676at 746.381 kb on + strand, within GFF676at 746.381 kb on + strand, within GFF676at 746.610 kb on + strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.611 kb on - strand, within GFF676at 746.675 kb on + strand, within GFF676at 746.676 kb on - strand, within GFF676at 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.807 kb on + strandat 746.808 kb on - strandat 746.808 kb on - strandat 746.925 kb on - strand, within GFF677at 747.126 kb on + strand, within GFF677at 747.140 kb on + strand, within GFF677at 747.141 kb on - strand, within GFF677at 747.141 kb on - strand, within GFF677at 747.359 kb on + strand, within GFF677at 747.359 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.362 kb on + strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.363 kb on - strand, within GFF677at 747.445 kb on + strand, within GFF677at 747.569 kb on - strandat 747.644 kb on + strandat 747.712 kb on - strandat 747.834 kb on - strandat 747.925 kb on + strand, within GFF678at 748.045 kb on + strand, within GFF678at 748.074 kb on + strand, within GFF678at 748.075 kb on - strand, within GFF678at 748.075 kb on - strand, within GFF678at 748.227 kb on + strand, within GFF678at 748.227 kb on + strand, within GFF678at 748.227 kb on + strand, within GFF678at 748.227 kb on + strand, within GFF678at 748.227 kb on + strand, within GFF678at 748.227 kb on + strand, within GFF678at 748.228 kb on - strand, within GFF678at 748.228 kb on - strand, within GFF678at 748.228 kb on - strand, within GFF678at 748.247 kb on - strand, within GFF678at 748.395 kb on - strand, within GFF678at 748.395 kb on - strand, within GFF678at 748.395 kb on - strand, within GFF678at 748.428 kb on + strand, within GFF678at 748.456 kb on + strand, within GFF678at 748.456 kb on + strand, within GFF678at 748.456 kb on + strand, within GFF678at 748.457 kb on - strand, within GFF678at 748.457 kb on - strand, within GFF678at 748.457 kb on - strand, within GFF678at 748.457 kb on - strand, within GFF678at 748.457 kb on - strand, within GFF678at 748.457 kb on - strand, within GFF678at 748.468 kb on + strand, within GFF678at 748.570 kb on + strand, within GFF678at 748.570 kb on + strand, within GFF678at 748.571 kb on - strand, within GFF678at 748.571 kb on - strand, within GFF678at 748.618 kb on + strand, within GFF678at 748.618 kb on + strand, within GFF678

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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745,861 - GFF676 0.21 -1.5
745,861 - GFF676 0.21 -3.0
745,861 - GFF676 0.21 -1.6
746,037 + GFF676 0.35 -1.3
746,037 + GFF676 0.35 -1.2
746,037 + GFF676 0.35 -1.3
746,038 - GFF676 0.35 -1.6
746,038 - GFF676 0.35 -2.7
746,038 - GFF676 0.35 -2.9
746,038 - GFF676 0.35 -1.6
746,038 - GFF676 0.35 -0.8
746,196 + GFF676 0.48 -2.0
746,196 + GFF676 0.48 -2.3
746,229 + GFF676 0.51 -1.0
746,381 + GFF676 0.63 -1.5
746,381 + GFF676 0.63 -2.0
746,610 + GFF676 0.82 -2.2
746,611 - GFF676 0.82 -2.5
746,611 - GFF676 0.82 -1.5
746,611 - GFF676 0.82 -1.6
746,611 - GFF676 0.82 -0.8
746,611 - GFF676 0.82 -2.9
746,675 + GFF676 0.87 -1.3
746,676 - GFF676 0.87 -0.5
746,807 + -0.5
746,807 + -2.1
746,807 + +0.4
746,807 + +0.0
746,807 + -0.5
746,807 + -2.2
746,807 + -0.2
746,807 + -0.5
746,808 - -2.5
746,808 - -1.2
746,925 - GFF677 0.11 -1.6
747,126 + GFF677 0.36 -3.8
747,140 + GFF677 0.37 -2.2
747,141 - GFF677 0.38 -1.3
747,141 - GFF677 0.38 +0.1
747,359 + GFF677 0.64 -1.5
747,359 + GFF677 0.64 -0.8
747,362 + GFF677 0.65 +0.8
747,362 + GFF677 0.65 -0.2
747,362 + GFF677 0.65 -1.6
747,362 + GFF677 0.65 -2.0
747,362 + GFF677 0.65 -0.5
747,362 + GFF677 0.65 -1.6
747,363 - GFF677 0.65 -1.2
747,363 - GFF677 0.65 -2.3
747,363 - GFF677 0.65 -1.8
747,363 - GFF677 0.65 -2.1
747,363 - GFF677 0.65 -0.2
747,445 + GFF677 0.75 -2.7
747,569 - -1.3
747,644 + +0.1
747,712 - +0.0
747,834 - -0.0
747,925 + GFF678 0.11 +1.0
748,045 + GFF678 0.17 +0.8
748,074 + GFF678 0.19 -0.8
748,075 - GFF678 0.19 -0.2
748,075 - GFF678 0.19 -0.5
748,227 + GFF678 0.27 +0.1
748,227 + GFF678 0.27 +0.3
748,227 + GFF678 0.27 +0.7
748,227 + GFF678 0.27 -0.2
748,227 + GFF678 0.27 -0.3
748,227 + GFF678 0.27 -0.2
748,228 - GFF678 0.27 +0.3
748,228 - GFF678 0.27 +0.5
748,228 - GFF678 0.27 +2.2
748,247 - GFF678 0.28 -1.0
748,395 - GFF678 0.35 -0.4
748,395 - GFF678 0.35 -0.1
748,395 - GFF678 0.35 -0.8
748,428 + GFF678 0.37 +0.4
748,456 + GFF678 0.38 -0.3
748,456 + GFF678 0.38 -1.4
748,456 + GFF678 0.38 -0.2
748,457 - GFF678 0.38 -1.0
748,457 - GFF678 0.38 +0.5
748,457 - GFF678 0.38 +0.3
748,457 - GFF678 0.38 -0.3
748,457 - GFF678 0.38 +0.2
748,457 - GFF678 0.38 +0.1
748,468 + GFF678 0.39 +0.1
748,570 + GFF678 0.44 +0.8
748,570 + GFF678 0.44 -0.5
748,571 - GFF678 0.44 -0.6
748,571 - GFF678 0.44 -0.4
748,618 + GFF678 0.47 +0.0
748,618 + GFF678 0.47 +0.2

Or see this region's nucleotide sequence