Strain Fitness in Pseudomonas sp. DMC3 around GFF662

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF661 and GFF662 are separated by 113 nucleotidesGFF662 and GFF663 overlap by 4 nucleotides GFF661 - Oligopeptidase A, at 733,284 to 735,308 GFF661 GFF662 - hypothetical protein, at 735,422 to 735,712 GFF662 GFF663 - Oligopeptidase A, at 735,709 to 737,760 GFF663 Position (kb) 735 736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 734.551 kb on + strand, within GFF661at 734.605 kb on - strand, within GFF661at 734.605 kb on - strand, within GFF661at 734.605 kb on - strand, within GFF661at 734.605 kb on - strand, within GFF661at 734.641 kb on + strand, within GFF661at 734.641 kb on + strand, within GFF661at 734.641 kb on + strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.642 kb on - strand, within GFF661at 734.968 kb on + strand, within GFF661at 734.968 kb on + strand, within GFF661at 734.968 kb on + strand, within GFF661at 735.010 kb on + strand, within GFF661at 735.010 kb on + strand, within GFF661at 735.010 kb on + strand, within GFF661at 735.010 kb on + strand, within GFF661at 735.010 kb on + strand, within GFF661at 735.011 kb on - strand, within GFF661at 735.011 kb on - strand, within GFF661at 735.011 kb on - strand, within GFF661at 735.011 kb on - strand, within GFF661at 735.346 kb on - strandat 735.346 kb on - strandat 735.346 kb on - strandat 735.346 kb on - strandat 735.372 kb on + strandat 735.373 kb on - strandat 735.373 kb on - strandat 735.373 kb on - strandat 735.373 kb on - strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.376 kb on + strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.377 kb on - strandat 735.416 kb on + strandat 735.416 kb on + strandat 735.417 kb on - strandat 735.517 kb on + strand, within GFF662at 735.517 kb on + strand, within GFF662at 735.518 kb on - strand, within GFF662at 735.518 kb on - strand, within GFF662at 735.923 kb on + strand, within GFF663at 735.923 kb on + strand, within GFF663at 735.923 kb on + strand, within GFF663at 735.923 kb on + strand, within GFF663at 735.923 kb on + strand, within GFF663at 735.923 kb on + strand, within GFF663at 735.924 kb on - strand, within GFF663at 735.924 kb on - strand, within GFF663at 735.924 kb on - strand, within GFF663at 735.929 kb on + strand, within GFF663at 735.929 kb on + strand, within GFF663at 735.929 kb on + strand, within GFF663at 735.929 kb on + strand, within GFF663at 735.929 kb on + strand, within GFF663at 735.929 kb on + strand, within GFF663at 735.930 kb on - strand, within GFF663at 735.930 kb on - strand, within GFF663at 735.930 kb on - strand, within GFF663at 735.930 kb on - strand, within GFF663at 735.932 kb on + strand, within GFF663at 735.932 kb on + strand, within GFF663at 736.193 kb on + strand, within GFF663at 736.193 kb on + strand, within GFF663at 736.194 kb on - strand, within GFF663at 736.523 kb on + strand, within GFF663at 736.524 kb on - strand, within GFF663at 736.634 kb on + strand, within GFF663at 736.688 kb on + strand, within GFF663

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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734,551 + GFF661 0.63 +2.0
734,605 - GFF661 0.65 +0.2
734,605 - GFF661 0.65 -0.7
734,605 - GFF661 0.65 +0.2
734,605 - GFF661 0.65 -0.6
734,641 + GFF661 0.67 +0.3
734,641 + GFF661 0.67 -0.5
734,641 + GFF661 0.67 -0.6
734,642 - GFF661 0.67 +0.7
734,642 - GFF661 0.67 -0.4
734,642 - GFF661 0.67 -1.6
734,642 - GFF661 0.67 +1.2
734,642 - GFF661 0.67 -0.0
734,642 - GFF661 0.67 -0.3
734,642 - GFF661 0.67 +0.2
734,642 - GFF661 0.67 +0.8
734,642 - GFF661 0.67 -1.2
734,642 - GFF661 0.67 -0.4
734,968 + GFF661 0.83 -0.3
734,968 + GFF661 0.83 +0.0
734,968 + GFF661 0.83 +1.3
735,010 + GFF661 0.85 +0.0
735,010 + GFF661 0.85 -1.0
735,010 + GFF661 0.85 +0.4
735,010 + GFF661 0.85 -0.3
735,010 + GFF661 0.85 -3.0
735,011 - GFF661 0.85 -0.1
735,011 - GFF661 0.85 -0.8
735,011 - GFF661 0.85 +1.0
735,011 - GFF661 0.85 +0.1
735,346 - -0.4
735,346 - +1.4
735,346 - +0.5
735,346 - -0.2
735,372 + +0.5
735,373 - -2.3
735,373 - -1.3
735,373 - -0.2
735,373 - -1.4
735,376 + +0.4
735,376 + -0.1
735,376 + +0.2
735,376 + +0.1
735,376 + +0.9
735,376 + +0.8
735,376 + -0.9
735,376 + -0.1
735,376 + -2.6
735,376 + -0.7
735,376 + -0.5
735,376 + -0.9
735,376 + +0.2
735,376 + -1.8
735,376 + -0.9
735,376 + -0.3
735,376 + -0.6
735,377 - +0.8
735,377 - -0.2
735,377 - +0.3
735,377 - -0.0
735,377 - +1.5
735,377 - -0.4
735,377 - +0.3
735,377 - +0.3
735,377 - +0.3
735,377 - -1.5
735,377 - -0.6
735,377 - +0.0
735,377 - -0.6
735,416 + -1.5
735,416 + -0.2
735,417 - -0.7
735,517 + GFF662 0.33 +0.4
735,517 + GFF662 0.33 -1.4
735,518 - GFF662 0.33 -0.2
735,518 - GFF662 0.33 -0.7
735,923 + GFF663 0.10 -0.5
735,923 + GFF663 0.10 -1.5
735,923 + GFF663 0.10 -0.8
735,923 + GFF663 0.10 -0.2
735,923 + GFF663 0.10 -1.6
735,923 + GFF663 0.10 -0.4
735,924 - GFF663 0.10 -0.3
735,924 - GFF663 0.10 +0.6
735,924 - GFF663 0.10 -0.3
735,929 + GFF663 0.11 -1.1
735,929 + GFF663 0.11 -2.8
735,929 + GFF663 0.11 +0.5
735,929 + GFF663 0.11 +1.0
735,929 + GFF663 0.11 -1.9
735,929 + GFF663 0.11 -0.5
735,930 - GFF663 0.11 +0.9
735,930 - GFF663 0.11 -2.2
735,930 - GFF663 0.11 +0.2
735,930 - GFF663 0.11 +0.4
735,932 + GFF663 0.11 -2.3
735,932 + GFF663 0.11 +1.3
736,193 + GFF663 0.24 -1.2
736,193 + GFF663 0.24 +0.0
736,194 - GFF663 0.24 -0.4
736,523 + GFF663 0.40 -1.2
736,524 - GFF663 0.40 -0.0
736,634 + GFF663 0.45 -1.5
736,688 + GFF663 0.48 +1.2

Or see this region's nucleotide sequence