Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5241 and GFF5242 are separated by 294 nucleotides GFF5242 and GFF5243 are separated by 107 nucleotides GFF5243 and GFF5244 are separated by 102 nucleotides GFF5244 and GFF5245 are separated by 13 nucleotides
GFF5241 - hypothetical protein, at 18,900 to 19,724
GFF5241
GFF5242 - hypothetical protein, at 20,019 to 20,405
GFF5242
GFF5243 - Outer membrane porin F, at 20,513 to 21,547
GFF5243
GFF5244 - Uroporphyrinogen-III C-methyltransferase, at 21,650 to 22,411
GFF5244
GFF5245 - Nitrate reductase, at 22,425 to 25,136
GFF5245
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.560 kb on + strand, within GFF5241 at 19.561 kb on - strand, within GFF5241 at 19.575 kb on + strand, within GFF5241 at 19.575 kb on + strand, within GFF5241 at 19.575 kb on + strand, within GFF5241 at 19.575 kb on + strand, within GFF5241 at 19.576 kb on - strand, within GFF5241 at 19.576 kb on - strand, within GFF5241 at 19.576 kb on - strand, within GFF5241 at 19.576 kb on - strand, within GFF5241 at 19.641 kb on - strand, within GFF5241 at 19.641 kb on - strand, within GFF5241 at 19.672 kb on + strand at 19.673 kb on - strand at 19.673 kb on - strand at 19.673 kb on - strand at 19.673 kb on - strand at 19.673 kb on - strand at 19.740 kb on + strand at 19.741 kb on - strand at 19.741 kb on - strand at 19.741 kb on - strand at 19.745 kb on + strand at 19.745 kb on + strand at 19.745 kb on + strand at 19.745 kb on + strand at 19.909 kb on + strand at 19.958 kb on + strand at 20.095 kb on - strand, within GFF5242 at 20.238 kb on + strand, within GFF5242 at 20.403 kb on + strand at 20.403 kb on + strand at 20.403 kb on + strand at 20.404 kb on - strand at 20.404 kb on - strand at 20.417 kb on + strand at 20.417 kb on + strand at 20.417 kb on + strand at 20.417 kb on + strand at 20.417 kb on + strand at 20.424 kb on + strand at 20.424 kb on + strand at 20.424 kb on + strand at 20.424 kb on + strand at 20.425 kb on - strand at 20.425 kb on - strand at 20.430 kb on + strand at 20.430 kb on + strand at 20.431 kb on - strand at 20.444 kb on + strand at 20.507 kb on + strand at 20.508 kb on - strand at 20.745 kb on + strand, within GFF5243 at 20.745 kb on + strand, within GFF5243 at 20.745 kb on + strand, within GFF5243 at 20.745 kb on + strand, within GFF5243 at 20.746 kb on - strand, within GFF5243 at 20.746 kb on - strand, within GFF5243 at 20.801 kb on + strand, within GFF5243 at 20.893 kb on + strand, within GFF5243 at 20.937 kb on - strand, within GFF5243 at 20.981 kb on + strand, within GFF5243 at 20.981 kb on + strand, within GFF5243 at 20.981 kb on + strand, within GFF5243 at 20.982 kb on - strand, within GFF5243 at 21.243 kb on + strand, within GFF5243 at 21.260 kb on + strand, within GFF5243 at 21.300 kb on - strand, within GFF5243 at 21.317 kb on - strand, within GFF5243 at 21.317 kb on - strand, within GFF5243 at 21.317 kb on - strand, within GFF5243 at 21.356 kb on + strand, within GFF5243 at 21.356 kb on + strand, within GFF5243 at 21.356 kb on + strand, within GFF5243 at 21.356 kb on + strand, within GFF5243 at 21.357 kb on - strand, within GFF5243 at 21.357 kb on - strand, within GFF5243 at 21.357 kb on - strand, within GFF5243 at 21.357 kb on - strand, within GFF5243 at 21.416 kb on + strand, within GFF5243 at 21.416 kb on + strand, within GFF5243 at 21.417 kb on - strand, within GFF5243 at 21.417 kb on - strand, within GFF5243 at 21.505 kb on - strand at 21.517 kb on - strand at 21.517 kb on - strand at 21.541 kb on + strand at 21.541 kb on + strand at 21.541 kb on + strand at 21.542 kb on - strand at 21.542 kb on - strand at 21.542 kb on - strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.545 kb on + strand at 21.546 kb on - strand at 21.546 kb on - strand at 21.549 kb on + strand at 21.550 kb on - strand at 21.550 kb on - strand at 21.550 kb on - strand at 21.645 kb on + strand at 21.645 kb on + strand at 21.645 kb on + strand at 21.646 kb on - strand at 21.646 kb on - strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.658 kb on + strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.659 kb on - strand at 21.670 kb on - strand at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.912 kb on + strand, within GFF5244 at 21.913 kb on - strand, within GFF5244 at 21.913 kb on - strand, within GFF5244 at 22.030 kb on + strand, within GFF5244 at 22.188 kb on + strand, within GFF5244 at 22.188 kb on + strand, within GFF5244 at 22.210 kb on + strand, within GFF5244 at 22.210 kb on + strand, within GFF5244 at 22.211 kb on - strand, within GFF5244 at 22.211 kb on - strand, within GFF5244 at 22.211 kb on - strand, within GFF5244 at 22.211 kb on - strand, within GFF5244 at 22.426 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 19,560 + GFF5241 0.80 -1.6 19,560 + GFF5241 0.80 +2.3 19,560 + GFF5241 0.80 -0.5 19,560 + GFF5241 0.80 -0.5 19,560 + GFF5241 0.80 +1.1 19,560 + GFF5241 0.80 +0.1 19,560 + GFF5241 0.80 +0.8 19,560 + GFF5241 0.80 +0.4 19,560 + GFF5241 0.80 +0.2 19,560 + GFF5241 0.80 -0.2 19,561 - GFF5241 0.80 -0.1 19,575 + GFF5241 0.82 -1.5 19,575 + GFF5241 0.82 -0.4 19,575 + GFF5241 0.82 -1.6 19,575 + GFF5241 0.82 +0.6 19,576 - GFF5241 0.82 +0.3 19,576 - GFF5241 0.82 +0.3 19,576 - GFF5241 0.82 -0.7 19,576 - GFF5241 0.82 +0.6 19,641 - GFF5241 0.90 +0.4 19,641 - GFF5241 0.90 -1.2 19,672 + -0.8 19,673 - -0.0 19,673 - -2.6 19,673 - +0.1 19,673 - +0.3 19,673 - +0.5 19,740 + +0.6 19,741 - -1.0 19,741 - -1.5 19,741 - -0.5 19,745 + -1.0 19,745 + +0.1 19,745 + -1.6 19,745 + -0.2 19,909 + -0.5 19,958 + -0.8 20,095 - GFF5242 0.20 -0.5 20,238 + GFF5242 0.57 -0.5 20,403 + +0.8 20,403 + -0.8 20,403 + -0.8 20,404 - -1.5 20,404 - -0.2 20,417 + -0.8 20,417 + +0.5 20,417 + +0.5 20,417 + -0.2 20,417 + -0.6 20,424 + +0.7 20,424 + +0.4 20,424 + +0.3 20,424 + -0.3 20,425 - +0.1 20,425 - +0.4 20,430 + -0.3 20,430 + -1.0 20,431 - -0.5 20,444 + +1.3 20,507 + -1.3 20,508 - -0.5 20,745 + GFF5243 0.22 -0.5 20,745 + GFF5243 0.22 -1.5 20,745 + GFF5243 0.22 -0.8 20,745 + GFF5243 0.22 -1.5 20,746 - GFF5243 0.23 -0.8 20,746 - GFF5243 0.23 -0.8 20,801 + GFF5243 0.28 -0.5 20,893 + GFF5243 0.37 -1.6 20,937 - GFF5243 0.41 -1.0 20,981 + GFF5243 0.45 -0.8 20,981 + GFF5243 0.45 -0.8 20,981 + GFF5243 0.45 -0.8 20,982 - GFF5243 0.45 -0.5 21,243 + GFF5243 0.71 -1.3 21,260 + GFF5243 0.72 -1.9 21,300 - GFF5243 0.76 -2.0 21,317 - GFF5243 0.78 -0.8 21,317 - GFF5243 0.78 -0.5 21,317 - GFF5243 0.78 -0.5 21,356 + GFF5243 0.81 -1.3 21,356 + GFF5243 0.81 -2.2 21,356 + GFF5243 0.81 -3.1 21,356 + GFF5243 0.81 -1.0 21,357 - GFF5243 0.82 -1.8 21,357 - GFF5243 0.82 -0.5 21,357 - GFF5243 0.82 -0.5 21,357 - GFF5243 0.82 -0.5 21,416 + GFF5243 0.87 -0.5 21,416 + GFF5243 0.87 -1.5 21,417 - GFF5243 0.87 +0.2 21,417 - GFF5243 0.87 -1.0 21,505 - -1.0 21,517 - -0.5 21,517 - -0.8 21,541 + +0.9 21,541 + +0.0 21,541 + -1.6 21,542 - -0.6 21,542 - +0.3 21,542 - -0.6 21,545 + +0.8 21,545 + +0.5 21,545 + -1.4 21,545 + -0.5 21,545 + +0.2 21,545 + -1.3 21,545 + +0.7 21,545 + -1.0 21,545 + -0.2 21,546 - -1.0 21,546 - -0.8 21,549 + +0.6 21,550 - -1.8 21,550 - -0.8 21,550 - -1.2 21,645 + -0.3 21,645 + -0.7 21,645 + +0.8 21,646 - -0.9 21,646 - -0.1 21,658 + +0.5 21,658 + +0.4 21,658 + -0.5 21,658 + +0.0 21,658 + +0.3 21,658 + +1.2 21,658 + -0.2 21,658 + +0.1 21,658 + -0.0 21,658 + +0.8 21,658 + -0.2 21,658 + +0.0 21,658 + -0.5 21,658 + -1.0 21,658 + +0.7 21,658 + -0.9 21,658 + +1.1 21,658 + +0.4 21,659 - -2.5 21,659 - -1.0 21,659 - -0.4 21,659 - +0.0 21,659 - -1.6 21,659 - -0.9 21,659 - -0.2 21,659 - -0.3 21,659 - -0.1 21,659 - +1.9 21,659 - -0.3 21,659 - +1.5 21,659 - +0.7 21,659 - +0.2 21,659 - -0.3 21,659 - +0.5 21,670 - +0.2 21,912 + GFF5244 0.34 -1.3 21,912 + GFF5244 0.34 -0.7 21,912 + GFF5244 0.34 -0.5 21,912 + GFF5244 0.34 -0.1 21,912 + GFF5244 0.34 -0.7 21,912 + GFF5244 0.34 +0.2 21,913 - GFF5244 0.35 +0.9 21,913 - GFF5244 0.35 -0.2 22,030 + GFF5244 0.50 -0.3 22,188 + GFF5244 0.71 -0.3 22,188 + GFF5244 0.71 -1.0 22,210 + GFF5244 0.73 -0.2 22,210 + GFF5244 0.73 +1.0 22,211 - GFF5244 0.74 +0.5 22,211 - GFF5244 0.74 -0.8 22,211 - GFF5244 0.74 -0.6 22,211 - GFF5244 0.74 +0.1 22,426 + -0.8
Or see this region's nucleotide sequence