Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5190 and GFF5191 are separated by 181 nucleotides GFF5191 and GFF5192 are separated by 311 nucleotides GFF5192 and GFF5193 are separated by 66 nucleotides GFF5193 and GFF5194 are separated by 3 nucleotides
GFF5190 - hypothetical protein, at 68,875 to 69,213
GFF5190
GFF5191 - DNA protection during starvation protein 2, at 69,395 to 69,865
GFF5191
GFF5192 - hypothetical protein, at 70,177 to 70,779
GFF5192
GFF5193 - Protein SlyX, at 70,846 to 71,052
GFF5193
GFF5194 - hypothetical protein, at 71,056 to 71,481
GFF5194
Position (kb) 70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 69.208 kb on + strand at 69.208 kb on + strand at 69.208 kb on + strand at 69.209 kb on - strand at 69.209 kb on - strand at 69.209 kb on - strand at 69.209 kb on - strand at 69.209 kb on - strand at 69.209 kb on - strand at 69.213 kb on + strand at 69.213 kb on + strand at 69.247 kb on + strand at 69.247 kb on + strand at 69.248 kb on - strand at 69.248 kb on - strand at 69.249 kb on + strand at 69.249 kb on + strand at 69.273 kb on - strand at 69.301 kb on - strand at 69.322 kb on + strand at 69.323 kb on - strand at 69.327 kb on + strand at 69.345 kb on - strand at 69.579 kb on - strand, within GFF5191 at 69.579 kb on - strand, within GFF5191 at 69.595 kb on + strand, within GFF5191 at 69.595 kb on + strand, within GFF5191 at 69.595 kb on + strand, within GFF5191 at 69.596 kb on - strand, within GFF5191 at 69.596 kb on - strand, within GFF5191 at 69.598 kb on + strand, within GFF5191 at 69.599 kb on - strand, within GFF5191 at 69.599 kb on - strand, within GFF5191 at 69.615 kb on + strand, within GFF5191 at 69.615 kb on + strand, within GFF5191 at 69.615 kb on + strand, within GFF5191 at 69.616 kb on - strand, within GFF5191 at 69.616 kb on - strand, within GFF5191 at 69.699 kb on + strand, within GFF5191 at 69.699 kb on + strand, within GFF5191 at 69.699 kb on + strand, within GFF5191 at 69.699 kb on + strand, within GFF5191 at 69.700 kb on - strand, within GFF5191 at 69.700 kb on - strand, within GFF5191 at 69.700 kb on - strand, within GFF5191 at 69.763 kb on + strand, within GFF5191 at 69.778 kb on - strand, within GFF5191 at 69.778 kb on - strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.786 kb on + strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.787 kb on - strand, within GFF5191 at 69.916 kb on + strand at 69.916 kb on + strand at 69.917 kb on - strand at 69.917 kb on - strand at 69.917 kb on - strand at 69.942 kb on + strand at 69.943 kb on - strand at 69.943 kb on - strand at 70.026 kb on + strand at 70.027 kb on - strand at 70.031 kb on - strand at 70.088 kb on + strand at 70.088 kb on + strand at 70.088 kb on + strand at 70.088 kb on + strand at 70.089 kb on - strand at 70.089 kb on - strand at 70.089 kb on - strand at 70.089 kb on - strand at 70.106 kb on + strand at 70.106 kb on + strand at 70.107 kb on - strand at 70.107 kb on - strand at 70.199 kb on + strand at 70.262 kb on - strand, within GFF5192 at 70.262 kb on - strand, within GFF5192 at 70.262 kb on - strand, within GFF5192 at 70.285 kb on + strand, within GFF5192 at 70.285 kb on + strand, within GFF5192 at 70.285 kb on + strand, within GFF5192 at 70.285 kb on + strand, within GFF5192 at 70.285 kb on + strand, within GFF5192 at 70.285 kb on + strand, within GFF5192 at 70.286 kb on - strand, within GFF5192 at 70.286 kb on - strand, within GFF5192 at 70.286 kb on - strand, within GFF5192 at 70.329 kb on - strand, within GFF5192 at 70.519 kb on + strand, within GFF5192 at 70.520 kb on - strand, within GFF5192 at 70.549 kb on - strand, within GFF5192 at 70.552 kb on + strand, within GFF5192 at 70.552 kb on + strand, within GFF5192 at 70.552 kb on + strand, within GFF5192 at 70.552 kb on + strand, within GFF5192 at 70.553 kb on - strand, within GFF5192 at 70.553 kb on - strand, within GFF5192 at 70.553 kb on - strand, within GFF5192 at 70.553 kb on - strand, within GFF5192 at 70.553 kb on - strand, within GFF5192 at 70.553 kb on - strand, within GFF5192 at 70.553 kb on - strand, within GFF5192 at 70.553 kb on - strand, within GFF5192 at 70.642 kb on - strand, within GFF5192 at 70.829 kb on + strand at 70.850 kb on + strand at 70.850 kb on + strand at 70.851 kb on - strand at 70.851 kb on - strand at 71.119 kb on + strand, within GFF5194 at 71.119 kb on + strand, within GFF5194 at 71.120 kb on - strand, within GFF5194 at 71.136 kb on - strand, within GFF5194 at 71.136 kb on - strand, within GFF5194 at 71.193 kb on + strand, within GFF5194 at 71.194 kb on - strand, within GFF5194 at 71.215 kb on + strand, within GFF5194 at 71.215 kb on + strand, within GFF5194 at 71.215 kb on + strand, within GFF5194 at 71.216 kb on - strand, within GFF5194 at 71.216 kb on - strand, within GFF5194 at 71.216 kb on - strand, within GFF5194 at 71.216 kb on - strand, within GFF5194 at 71.216 kb on - strand, within GFF5194 at 71.216 kb on - strand, within GFF5194 at 71.282 kb on - strand, within GFF5194 at 71.282 kb on - strand, within GFF5194 at 71.311 kb on + strand, within GFF5194 at 71.311 kb on + strand, within GFF5194 at 71.311 kb on + strand, within GFF5194 at 71.312 kb on - strand, within GFF5194 at 71.312 kb on - strand, within GFF5194 at 71.353 kb on + strand, within GFF5194 at 71.353 kb on + strand, within GFF5194 at 71.353 kb on + strand, within GFF5194 at 71.353 kb on + strand, within GFF5194 at 71.353 kb on + strand, within GFF5194 at 71.354 kb on - strand, within GFF5194 at 71.354 kb on - strand, within GFF5194 at 71.354 kb on - strand, within GFF5194 at 71.354 kb on - strand, within GFF5194 at 71.354 kb on - strand, within GFF5194 at 71.354 kb on - strand, within GFF5194 at 71.355 kb on + strand, within GFF5194 at 71.355 kb on + strand, within GFF5194 at 71.355 kb on + strand, within GFF5194 at 71.355 kb on + strand, within GFF5194 at 71.355 kb on + strand, within GFF5194 at 71.355 kb on + strand, within GFF5194 at 71.356 kb on - strand, within GFF5194 at 71.356 kb on - strand, within GFF5194 at 71.371 kb on + strand, within GFF5194 at 71.372 kb on - strand, within GFF5194 at 71.378 kb on - strand, within GFF5194 at 71.378 kb on - strand, within GFF5194 at 71.378 kb on - strand, within GFF5194 at 71.390 kb on + strand, within GFF5194 at 71.390 kb on + strand, within GFF5194 at 71.391 kb on - strand, within GFF5194 at 71.503 kb on + strand at 71.504 kb on - strand at 71.504 kb on - strand at 71.504 kb on - strand at 71.504 kb on - strand at 71.504 kb on - strand at 71.504 kb on - strand at 71.563 kb on + strand at 71.563 kb on + strand at 71.563 kb on + strand at 71.563 kb on + strand at 71.563 kb on + strand at 71.563 kb on + strand at 71.563 kb on + strand at 71.564 kb on - strand at 71.564 kb on - strand at 71.564 kb on - strand at 71.564 kb on - strand at 71.603 kb on + strand at 71.603 kb on + strand at 71.603 kb on + strand at 71.603 kb on + strand at 71.604 kb on - strand at 71.604 kb on - strand at 71.611 kb on + strand at 71.612 kb on - strand at 71.612 kb on - strand at 71.612 kb on - strand at 71.625 kb on + strand at 71.625 kb on + strand at 71.625 kb on + strand at 71.625 kb on + strand at 71.625 kb on + strand at 71.625 kb on + strand at 71.626 kb on - strand at 71.626 kb on - strand at 71.626 kb on - strand at 71.634 kb on + strand at 71.635 kb on - strand at 71.654 kb on - strand at 71.737 kb on + strand at 71.737 kb on + strand at 71.737 kb on + strand at 71.737 kb on + strand at 71.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 69,208 + -0.2 69,208 + -0.9 69,208 + -1.0 69,209 - +0.1 69,209 - +0.1 69,209 - -1.7 69,209 - -0.9 69,209 - +0.1 69,209 - -0.7 69,213 + +0.1 69,213 + -1.0 69,247 + -2.3 69,247 + +0.3 69,248 - -0.5 69,248 - -0.9 69,249 + -0.3 69,249 + -0.5 69,273 - +0.8 69,301 - +0.8 69,322 + -0.6 69,323 - +0.9 69,327 + +0.4 69,345 - +0.2 69,579 - GFF5191 0.39 +1.3 69,579 - GFF5191 0.39 -0.2 69,595 + GFF5191 0.42 -0.8 69,595 + GFF5191 0.42 -0.8 69,595 + GFF5191 0.42 -0.2 69,596 - GFF5191 0.43 +0.0 69,596 - GFF5191 0.43 -0.0 69,598 + GFF5191 0.43 +0.0 69,599 - GFF5191 0.43 +0.0 69,599 - GFF5191 0.43 -0.6 69,615 + GFF5191 0.47 -0.1 69,615 + GFF5191 0.47 -1.0 69,615 + GFF5191 0.47 -1.5 69,616 - GFF5191 0.47 -0.8 69,616 - GFF5191 0.47 -0.3 69,699 + GFF5191 0.65 +0.6 69,699 + GFF5191 0.65 -0.3 69,699 + GFF5191 0.65 -1.2 69,699 + GFF5191 0.65 +0.2 69,700 - GFF5191 0.65 -0.3 69,700 - GFF5191 0.65 -0.2 69,700 - GFF5191 0.65 -0.3 69,763 + GFF5191 0.78 -1.0 69,778 - GFF5191 0.81 +0.5 69,778 - GFF5191 0.81 +0.1 69,786 + GFF5191 0.83 -0.2 69,786 + GFF5191 0.83 +1.5 69,786 + GFF5191 0.83 -0.3 69,786 + GFF5191 0.83 +0.7 69,786 + GFF5191 0.83 -0.6 69,786 + GFF5191 0.83 -1.4 69,786 + GFF5191 0.83 +0.7 69,786 + GFF5191 0.83 -0.1 69,786 + GFF5191 0.83 +0.5 69,786 + GFF5191 0.83 -0.7 69,786 + GFF5191 0.83 -0.9 69,786 + GFF5191 0.83 +0.1 69,786 + GFF5191 0.83 -0.3 69,786 + GFF5191 0.83 +0.4 69,786 + GFF5191 0.83 +0.0 69,786 + GFF5191 0.83 +1.0 69,786 + GFF5191 0.83 -0.3 69,786 + GFF5191 0.83 -0.1 69,786 + GFF5191 0.83 +0.3 69,787 - GFF5191 0.83 -0.4 69,787 - GFF5191 0.83 +0.7 69,787 - GFF5191 0.83 -1.3 69,787 - GFF5191 0.83 -0.7 69,787 - GFF5191 0.83 -1.1 69,787 - GFF5191 0.83 -0.4 69,787 - GFF5191 0.83 +0.3 69,787 - GFF5191 0.83 -0.3 69,787 - GFF5191 0.83 +0.6 69,787 - GFF5191 0.83 +0.9 69,787 - GFF5191 0.83 -0.2 69,787 - GFF5191 0.83 +0.2 69,787 - GFF5191 0.83 -0.7 69,787 - GFF5191 0.83 +0.1 69,787 - GFF5191 0.83 -1.0 69,787 - GFF5191 0.83 -0.1 69,787 - GFF5191 0.83 +1.0 69,787 - GFF5191 0.83 -1.1 69,787 - GFF5191 0.83 +0.5 69,787 - GFF5191 0.83 -0.7 69,787 - GFF5191 0.83 -0.0 69,916 + -1.9 69,916 + -0.1 69,917 - -0.6 69,917 - -0.2 69,917 - +2.0 69,942 + -0.3 69,943 - +0.2 69,943 - +0.1 70,026 + -0.2 70,027 - +0.4 70,031 - -0.9 70,088 + -1.4 70,088 + -0.6 70,088 + +1.0 70,088 + +0.1 70,089 - +0.8 70,089 - +0.5 70,089 - -0.3 70,089 - -1.9 70,106 + +0.5 70,106 + +0.3 70,107 - -0.6 70,107 - +0.1 70,199 + -0.9 70,262 - GFF5192 0.14 -1.1 70,262 - GFF5192 0.14 -1.3 70,262 - GFF5192 0.14 -0.9 70,285 + GFF5192 0.18 -0.6 70,285 + GFF5192 0.18 -0.6 70,285 + GFF5192 0.18 +0.1 70,285 + GFF5192 0.18 -0.3 70,285 + GFF5192 0.18 -0.9 70,285 + GFF5192 0.18 -0.1 70,286 - GFF5192 0.18 +0.9 70,286 - GFF5192 0.18 -1.9 70,286 - GFF5192 0.18 -0.2 70,329 - GFF5192 0.25 +0.4 70,519 + GFF5192 0.57 +1.3 70,520 - GFF5192 0.57 +1.0 70,549 - GFF5192 0.62 +0.7 70,552 + GFF5192 0.62 +0.2 70,552 + GFF5192 0.62 +0.1 70,552 + GFF5192 0.62 -0.3 70,552 + GFF5192 0.62 +0.7 70,553 - GFF5192 0.62 +0.1 70,553 - GFF5192 0.62 +0.4 70,553 - GFF5192 0.62 -1.8 70,553 - GFF5192 0.62 -1.3 70,553 - GFF5192 0.62 -1.6 70,553 - GFF5192 0.62 -1.8 70,553 - GFF5192 0.62 -1.1 70,553 - GFF5192 0.62 -1.7 70,642 - GFF5192 0.77 +0.1 70,829 + -0.5 70,850 + +0.5 70,850 + +0.6 70,851 - -0.2 70,851 - +1.4 71,119 + GFF5194 0.15 +0.2 71,119 + GFF5194 0.15 -0.5 71,120 - GFF5194 0.15 +1.0 71,136 - GFF5194 0.19 -1.0 71,136 - GFF5194 0.19 -0.3 71,193 + GFF5194 0.32 -1.6 71,194 - GFF5194 0.32 +0.6 71,215 + GFF5194 0.37 -1.3 71,215 + GFF5194 0.37 -0.5 71,215 + GFF5194 0.37 -0.4 71,216 - GFF5194 0.38 -0.2 71,216 - GFF5194 0.38 -0.0 71,216 - GFF5194 0.38 +0.8 71,216 - GFF5194 0.38 -0.1 71,216 - GFF5194 0.38 -0.4 71,216 - GFF5194 0.38 +1.7 71,282 - GFF5194 0.53 -0.4 71,282 - GFF5194 0.53 -0.8 71,311 + GFF5194 0.60 +0.8 71,311 + GFF5194 0.60 -0.3 71,311 + GFF5194 0.60 -1.5 71,312 - GFF5194 0.60 +0.2 71,312 - GFF5194 0.60 -1.4 71,353 + GFF5194 0.70 -1.1 71,353 + GFF5194 0.70 -0.9 71,353 + GFF5194 0.70 -0.6 71,353 + GFF5194 0.70 -0.0 71,353 + GFF5194 0.70 +0.4 71,354 - GFF5194 0.70 +0.7 71,354 - GFF5194 0.70 -0.2 71,354 - GFF5194 0.70 +0.2 71,354 - GFF5194 0.70 -0.8 71,354 - GFF5194 0.70 +0.1 71,354 - GFF5194 0.70 +0.7 71,355 + GFF5194 0.70 +0.2 71,355 + GFF5194 0.70 -2.3 71,355 + GFF5194 0.70 -2.0 71,355 + GFF5194 0.70 -0.6 71,355 + GFF5194 0.70 -0.7 71,355 + GFF5194 0.70 +0.5 71,356 - GFF5194 0.70 +0.1 71,356 - GFF5194 0.70 -1.1 71,371 + GFF5194 0.74 -0.1 71,372 - GFF5194 0.74 -0.9 71,378 - GFF5194 0.76 -0.0 71,378 - GFF5194 0.76 +0.3 71,378 - GFF5194 0.76 -0.6 71,390 + GFF5194 0.78 +1.0 71,390 + GFF5194 0.78 -0.2 71,391 - GFF5194 0.79 -0.3 71,503 + -0.1 71,504 - -0.3 71,504 - -0.6 71,504 - +0.7 71,504 - -1.1 71,504 - +1.6 71,504 - -0.6 71,563 + -0.4 71,563 + +0.8 71,563 + +0.1 71,563 + +0.3 71,563 + -2.9 71,563 + -0.1 71,563 + -0.5 71,564 - -0.8 71,564 - +0.1 71,564 - +0.4 71,564 - -0.9 71,603 + -1.3 71,603 + -0.5 71,603 + +0.1 71,603 + +0.5 71,604 - -0.1 71,604 - -0.2 71,611 + -1.2 71,612 - +1.3 71,612 - +0.2 71,612 - -0.4 71,625 + +0.8 71,625 + -0.3 71,625 + +0.6 71,625 + +0.8 71,625 + +0.1 71,625 + -0.1 71,626 - -0.6 71,626 - -0.2 71,626 - +0.2 71,634 + +0.7 71,635 - -0.9 71,654 - -0.4 71,737 + -1.4 71,737 + +0.1 71,737 + -0.3 71,737 + -0.8 71,738 - -0.1
Or see this region's nucleotide sequence