Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5182 and GFF5183 overlap by 11 nucleotides GFF5183 and GFF5184 are separated by 127 nucleotides GFF5184 and GFF5185 are separated by 0 nucleotides GFF5185 and GFF5186 are separated by 114 nucleotides
GFF5182 - Tol-Pal system protein TolQ, at 62,033 to 62,728
GFF5182
GFF5183 - Acyl-CoA thioester hydrolase YbgC, at 62,718 to 63,185
GFF5183
GFF5184 - Holliday junction ATP-dependent DNA helicase RuvB, at 63,313 to 64,374
GFF5184
GFF5185 - Holliday junction ATP-dependent DNA helicase RuvA, at 64,375 to 64,983
GFF5185
GFF5186 - Crossover junction endodeoxyribonuclease RuvC, at 65,098 to 65,625
GFF5186
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1 at 62.753 kb on + strand at 62.754 kb on - strand at 62.870 kb on + strand, within GFF5183 at 62.928 kb on + strand, within GFF5183 at 62.929 kb on - strand, within GFF5183 at 62.929 kb on - strand, within GFF5183 at 62.929 kb on - strand, within GFF5183 at 62.940 kb on + strand, within GFF5183 at 62.941 kb on - strand, within GFF5183 at 62.941 kb on - strand, within GFF5183 at 63.080 kb on + strand, within GFF5183 at 63.092 kb on - strand, within GFF5183 at 63.092 kb on - strand, within GFF5183 at 63.095 kb on + strand, within GFF5183 at 63.096 kb on - strand, within GFF5183 at 63.096 kb on - strand, within GFF5183 at 63.096 kb on - strand, within GFF5183 at 63.096 kb on - strand, within GFF5183 at 63.100 kb on + strand, within GFF5183 at 63.100 kb on + strand, within GFF5183 at 63.100 kb on + strand, within GFF5183 at 63.101 kb on - strand, within GFF5183 at 63.101 kb on - strand, within GFF5183 at 63.101 kb on - strand, within GFF5183 at 63.101 kb on - strand, within GFF5183 at 63.101 kb on - strand, within GFF5183 at 63.104 kb on - strand, within GFF5183 at 63.134 kb on - strand, within GFF5183 at 63.134 kb on - strand, within GFF5183 at 63.185 kb on + strand at 63.186 kb on - strand at 63.186 kb on - strand at 63.186 kb on - strand at 63.186 kb on - strand at 63.190 kb on + strand at 63.190 kb on + strand at 63.190 kb on + strand at 63.191 kb on - strand at 63.191 kb on - strand at 63.191 kb on - strand at 63.191 kb on - strand at 63.191 kb on - strand at 63.191 kb on - strand at 63.191 kb on - strand at 63.197 kb on + strand at 63.197 kb on + strand at 63.198 kb on - strand at 63.198 kb on - strand at 63.263 kb on + strand at 63.264 kb on - strand at 63.264 kb on - strand at 63.279 kb on + strand at 63.279 kb on + strand at 63.280 kb on - strand at 63.280 kb on - strand at 63.292 kb on + strand at 63.292 kb on + strand at 63.292 kb on + strand at 63.311 kb on + strand at 63.395 kb on + strand at 63.395 kb on + strand at 63.395 kb on + strand at 63.438 kb on + strand, within GFF5184 at 63.439 kb on - strand, within GFF5184 at 63.439 kb on - strand, within GFF5184 at 63.439 kb on - strand, within GFF5184 at 63.439 kb on - strand, within GFF5184 at 63.440 kb on + strand, within GFF5184 at 63.440 kb on + strand, within GFF5184 at 63.441 kb on - strand, within GFF5184 at 63.441 kb on - strand, within GFF5184 at 63.441 kb on - strand, within GFF5184 at 63.819 kb on - strand, within GFF5184 at 63.819 kb on - strand, within GFF5184 at 64.162 kb on - strand, within GFF5184 at 64.162 kb on - strand, within GFF5184 at 64.278 kb on - strand at 64.376 kb on + strand at 64.376 kb on + strand at 64.376 kb on + strand at 64.376 kb on + strand at 64.377 kb on - strand at 64.377 kb on - strand at 64.472 kb on + strand, within GFF5185 at 64.803 kb on - strand, within GFF5185 at 64.803 kb on - strand, within GFF5185 at 64.803 kb on - strand, within GFF5185 at 64.908 kb on - strand, within GFF5185 at 65.097 kb on - strand at 65.318 kb on + strand, within GFF5186 at 65.319 kb on - strand, within GFF5186
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 62,753 + -0.3 62,754 - +0.1 62,870 + GFF5183 0.32 -1.0 62,928 + GFF5183 0.45 -1.0 62,929 - GFF5183 0.45 -0.0 62,929 - GFF5183 0.45 -0.6 62,929 - GFF5183 0.45 -1.7 62,940 + GFF5183 0.47 -1.6 62,941 - GFF5183 0.48 -1.4 62,941 - GFF5183 0.48 -0.1 63,080 + GFF5183 0.77 -2.7 63,092 - GFF5183 0.80 -0.5 63,092 - GFF5183 0.80 -0.4 63,095 + GFF5183 0.81 -1.3 63,096 - GFF5183 0.81 -1.0 63,096 - GFF5183 0.81 +0.4 63,096 - GFF5183 0.81 +0.1 63,096 - GFF5183 0.81 -0.4 63,100 + GFF5183 0.82 -1.6 63,100 + GFF5183 0.82 -1.9 63,100 + GFF5183 0.82 -1.2 63,101 - GFF5183 0.82 -0.8 63,101 - GFF5183 0.82 -0.5 63,101 - GFF5183 0.82 -0.5 63,101 - GFF5183 0.82 +0.3 63,101 - GFF5183 0.82 -0.9 63,104 - GFF5183 0.82 -0.6 63,134 - GFF5183 0.89 +0.4 63,134 - GFF5183 0.89 +1.1 63,185 + -1.9 63,186 - -1.7 63,186 - -0.5 63,186 - -0.6 63,186 - +0.1 63,190 + -1.3 63,190 + -1.1 63,190 + -1.3 63,191 - -0.5 63,191 - +0.4 63,191 - +0.4 63,191 - +0.8 63,191 - -0.4 63,191 - -1.4 63,191 - -0.0 63,197 + -1.4 63,197 + -2.4 63,198 - -0.1 63,198 - +0.4 63,263 + +0.1 63,264 - -0.6 63,264 - +0.5 63,279 + -0.3 63,279 + +0.5 63,280 - -0.3 63,280 - +0.4 63,292 + -0.6 63,292 + +0.2 63,292 + +0.4 63,311 + +0.2 63,395 + +0.7 63,395 + +0.2 63,395 + -0.9 63,438 + GFF5184 0.12 -0.1 63,439 - GFF5184 0.12 +0.4 63,439 - GFF5184 0.12 -1.1 63,439 - GFF5184 0.12 +0.9 63,439 - GFF5184 0.12 -0.3 63,440 + GFF5184 0.12 -0.6 63,440 + GFF5184 0.12 +0.7 63,441 - GFF5184 0.12 -1.5 63,441 - GFF5184 0.12 +0.7 63,441 - GFF5184 0.12 +0.4 63,819 - GFF5184 0.48 -1.1 63,819 - GFF5184 0.48 -0.6 64,162 - GFF5184 0.80 -0.9 64,162 - GFF5184 0.80 -0.3 64,278 - -1.1 64,376 + +0.7 64,376 + -0.6 64,376 + -0.6 64,376 + +0.7 64,377 - -0.6 64,377 - -0.6 64,472 + GFF5185 0.16 -0.9 64,803 - GFF5185 0.70 -0.3 64,803 - GFF5185 0.70 +0.7 64,803 - GFF5185 0.70 +0.1 64,908 - GFF5185 0.88 +1.0 65,097 - -0.2 65,318 + GFF5186 0.42 -2.0 65,319 - GFF5186 0.42 -0.9
Or see this region's nucleotide sequence