Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5174 and GFF5175 are separated by 410 nucleotides GFF5175 and GFF5176 are separated by 1 nucleotides GFF5176 and GFF5177 are separated by 167 nucleotides
GFF5174 - Quinolinate synthase A, at 54,809 to 55,867
GFF5174
GFF5175 - 7-cyano-7-deazaguanine synthase, at 56,278 to 56,970
GFF5175
GFF5176 - 7-carboxy-7-deazaguanine synthase, at 56,972 to 57,619
GFF5176
GFF5177 - Cell division coordinator CpoB, at 57,787 to 58,626
GFF5177
Position (kb) 56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 55.313 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.315 kb on - strand, within GFF5174 at 55.315 kb on - strand, within GFF5174 at 55.315 kb on - strand, within GFF5174 at 55.315 kb on - strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.450 kb on - strand, within GFF5174 at 55.450 kb on - strand, within GFF5174 at 55.450 kb on - strand, within GFF5174 at 55.450 kb on - strand, within GFF5174 at 55.462 kb on + strand, within GFF5174 at 55.462 kb on + strand, within GFF5174 at 55.462 kb on + strand, within GFF5174 at 55.463 kb on - strand, within GFF5174 at 55.719 kb on + strand, within GFF5174 at 55.720 kb on - strand, within GFF5174 at 55.720 kb on - strand, within GFF5174 at 55.720 kb on - strand, within GFF5174 at 55.780 kb on - strand at 55.782 kb on + strand at 55.782 kb on + strand at 55.783 kb on - strand at 55.783 kb on - strand at 55.783 kb on - strand at 55.907 kb on + strand at 55.907 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.954 kb on + strand at 55.954 kb on + strand at 55.955 kb on - strand at 55.955 kb on - strand at 55.993 kb on + strand at 56.139 kb on - strand at 56.139 kb on - strand at 56.166 kb on - strand at 56.166 kb on - strand at 56.166 kb on - strand at 56.286 kb on - strand at 56.385 kb on - strand, within GFF5175 at 56.385 kb on - strand, within GFF5175 at 56.406 kb on - strand, within GFF5175 at 56.406 kb on - strand, within GFF5175 at 56.573 kb on + strand, within GFF5175 at 56.574 kb on - strand, within GFF5175 at 56.672 kb on + strand, within GFF5175 at 56.672 kb on + strand, within GFF5175 at 56.672 kb on + strand, within GFF5175 at 56.673 kb on - strand, within GFF5175 at 56.861 kb on + strand, within GFF5175 at 56.949 kb on + strand at 57.000 kb on + strand at 57.000 kb on + strand at 57.000 kb on + strand at 57.001 kb on - strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.004 kb on + strand at 57.005 kb on - strand at 57.005 kb on - strand at 57.005 kb on - strand at 57.005 kb on - strand at 57.026 kb on + strand at 57.101 kb on + strand, within GFF5176 at 57.101 kb on + strand, within GFF5176 at 57.102 kb on - strand, within GFF5176 at 57.130 kb on - strand, within GFF5176 at 57.130 kb on - strand, within GFF5176 at 57.130 kb on - strand, within GFF5176 at 57.226 kb on - strand, within GFF5176 at 57.302 kb on + strand, within GFF5176 at 57.302 kb on + strand, within GFF5176 at 57.309 kb on - strand, within GFF5176 at 57.489 kb on + strand, within GFF5176 at 57.504 kb on + strand, within GFF5176 at 57.619 kb on + strand at 57.620 kb on - strand at 57.641 kb on + strand at 57.641 kb on + strand at 57.641 kb on + strand at 57.642 kb on - strand at 57.642 kb on - strand at 57.693 kb on - strand at 57.788 kb on + strand at 57.788 kb on + strand at 57.788 kb on + strand at 57.788 kb on + strand at 57.788 kb on + strand at 57.789 kb on - strand at 57.789 kb on - strand at 57.789 kb on - strand at 57.789 kb on - strand at 57.789 kb on - strand at 57.800 kb on - strand at 57.902 kb on - strand, within GFF5177 at 57.917 kb on + strand, within GFF5177 at 57.918 kb on - strand, within GFF5177 at 57.918 kb on - strand, within GFF5177 at 57.951 kb on - strand, within GFF5177
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 55,313 + GFF5174 0.48 -0.1 55,314 + GFF5174 0.48 -1.9 55,314 + GFF5174 0.48 +0.6 55,314 + GFF5174 0.48 -0.5 55,314 + GFF5174 0.48 -1.2 55,314 + GFF5174 0.48 -0.6 55,314 + GFF5174 0.48 -2.5 55,315 - GFF5174 0.48 -1.6 55,315 - GFF5174 0.48 +0.8 55,315 - GFF5174 0.48 -0.8 55,315 - GFF5174 0.48 -0.1 55,449 + GFF5174 0.60 -1.0 55,449 + GFF5174 0.60 -0.5 55,449 + GFF5174 0.60 -0.6 55,449 + GFF5174 0.60 -1.3 55,449 + GFF5174 0.60 -1.1 55,449 + GFF5174 0.60 -0.9 55,449 + GFF5174 0.60 -0.8 55,450 - GFF5174 0.61 -1.2 55,450 - GFF5174 0.61 -0.8 55,450 - GFF5174 0.61 +0.2 55,450 - GFF5174 0.61 -0.1 55,462 + GFF5174 0.62 +1.0 55,462 + GFF5174 0.62 -0.9 55,462 + GFF5174 0.62 -0.5 55,463 - GFF5174 0.62 -0.7 55,719 + GFF5174 0.86 -0.0 55,720 - GFF5174 0.86 -0.4 55,720 - GFF5174 0.86 +0.4 55,720 - GFF5174 0.86 -0.3 55,780 - -1.5 55,782 + -1.9 55,782 + -1.7 55,783 - +0.7 55,783 - -0.9 55,783 - -1.6 55,907 + -1.1 55,907 + -0.5 55,909 + -0.3 55,909 + +0.5 55,909 + -0.3 55,909 + +0.8 55,909 + -0.3 55,909 + -0.3 55,909 + -0.8 55,909 + -0.1 55,909 + -0.6 55,910 - -0.1 55,910 - +0.7 55,910 - -0.4 55,910 - +0.8 55,910 - +1.4 55,910 - -0.5 55,954 + -0.1 55,954 + -0.5 55,955 - +1.2 55,955 - +0.9 55,993 + -0.5 56,139 - -0.9 56,139 - -2.0 56,166 - -0.4 56,166 - +1.4 56,166 - +0.5 56,286 - +0.4 56,385 - GFF5175 0.15 -0.2 56,385 - GFF5175 0.15 -0.6 56,406 - GFF5175 0.18 -0.6 56,406 - GFF5175 0.18 -1.1 56,573 + GFF5175 0.43 +0.1 56,574 - GFF5175 0.43 +0.7 56,672 + GFF5175 0.57 -2.1 56,672 + GFF5175 0.57 -1.7 56,672 + GFF5175 0.57 +0.8 56,673 - GFF5175 0.57 -0.7 56,861 + GFF5175 0.84 -1.1 56,949 + -0.0 57,000 + -0.6 57,000 + +0.9 57,000 + -0.2 57,001 - +0.5 57,004 + -0.9 57,004 + +1.3 57,004 + -2.4 57,004 + -0.7 57,004 + +0.2 57,004 + -1.3 57,004 + -0.2 57,005 - -0.6 57,005 - +1.1 57,005 - +0.2 57,005 - -0.6 57,026 + +0.2 57,101 + GFF5176 0.20 -1.5 57,101 + GFF5176 0.20 -0.7 57,102 - GFF5176 0.20 -0.3 57,130 - GFF5176 0.24 -0.3 57,130 - GFF5176 0.24 -0.6 57,130 - GFF5176 0.24 +0.8 57,226 - GFF5176 0.39 -1.1 57,302 + GFF5176 0.51 +0.2 57,302 + GFF5176 0.51 +1.1 57,309 - GFF5176 0.52 +0.8 57,489 + GFF5176 0.80 -0.8 57,504 + GFF5176 0.82 -1.3 57,619 + +0.9 57,620 - -0.7 57,641 + +0.2 57,641 + +0.1 57,641 + -1.1 57,642 - +0.1 57,642 - -0.0 57,693 - -1.0 57,788 + +0.2 57,788 + -0.2 57,788 + -0.1 57,788 + +0.2 57,788 + +0.0 57,789 - -0.1 57,789 - -1.4 57,789 - +0.3 57,789 - -0.0 57,789 - +1.2 57,800 - -1.4 57,902 - GFF5177 0.14 -0.3 57,917 + GFF5177 0.15 +0.3 57,918 - GFF5177 0.16 +1.5 57,918 - GFF5177 0.16 -0.4 57,951 - GFF5177 0.20 +1.0
Or see this region's nucleotide sequence