Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5172 and GFF5173 are separated by 97 nucleotides GFF5173 and GFF5174 are separated by 176 nucleotides GFF5174 and GFF5175 are separated by 410 nucleotides
GFF5172 - Major cold shock protein CspA, at 53,834 to 54,046
GFF5172
GFF5173 - hypothetical protein, at 54,144 to 54,632
GFF5173
GFF5174 - Quinolinate synthase A, at 54,809 to 55,867
GFF5174
GFF5175 - 7-cyano-7-deazaguanine synthase, at 56,278 to 56,970
GFF5175
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 53.812 kb on + strand at 53.812 kb on + strand at 53.829 kb on - strand at 53.829 kb on - strand at 53.893 kb on + strand, within GFF5172 at 53.893 kb on + strand, within GFF5172 at 53.925 kb on + strand, within GFF5172 at 53.926 kb on - strand, within GFF5172 at 54.030 kb on + strand at 54.030 kb on + strand at 54.030 kb on + strand at 54.055 kb on + strand at 54.073 kb on - strand at 54.073 kb on - strand at 54.078 kb on + strand at 54.079 kb on - strand at 54.103 kb on - strand at 54.220 kb on - strand, within GFF5173 at 54.267 kb on + strand, within GFF5173 at 54.267 kb on + strand, within GFF5173 at 54.267 kb on + strand, within GFF5173 at 54.267 kb on + strand, within GFF5173 at 54.268 kb on - strand, within GFF5173 at 54.373 kb on + strand, within GFF5173 at 54.373 kb on + strand, within GFF5173 at 54.373 kb on + strand, within GFF5173 at 54.500 kb on + strand, within GFF5173 at 54.500 kb on + strand, within GFF5173 at 54.501 kb on - strand, within GFF5173 at 54.501 kb on - strand, within GFF5173 at 54.530 kb on - strand, within GFF5173 at 54.530 kb on - strand, within GFF5173 at 54.530 kb on - strand, within GFF5173 at 54.588 kb on + strand at 54.589 kb on - strand at 54.630 kb on + strand at 54.630 kb on + strand at 54.631 kb on - strand at 54.631 kb on - strand at 54.640 kb on - strand at 54.688 kb on + strand at 54.689 kb on - strand at 54.689 kb on - strand at 54.697 kb on + strand at 54.698 kb on - strand at 54.723 kb on + strand at 54.794 kb on + strand at 54.795 kb on - strand at 54.798 kb on - strand at 54.798 kb on - strand at 55.062 kb on + strand, within GFF5174 at 55.062 kb on + strand, within GFF5174 at 55.062 kb on + strand, within GFF5174 at 55.062 kb on + strand, within GFF5174 at 55.063 kb on - strand, within GFF5174 at 55.138 kb on + strand, within GFF5174 at 55.139 kb on - strand, within GFF5174 at 55.139 kb on - strand, within GFF5174 at 55.139 kb on - strand, within GFF5174 at 55.225 kb on + strand, within GFF5174 at 55.225 kb on + strand, within GFF5174 at 55.226 kb on - strand, within GFF5174 at 55.226 kb on - strand, within GFF5174 at 55.226 kb on - strand, within GFF5174 at 55.313 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.314 kb on + strand, within GFF5174 at 55.315 kb on - strand, within GFF5174 at 55.315 kb on - strand, within GFF5174 at 55.315 kb on - strand, within GFF5174 at 55.315 kb on - strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.449 kb on + strand, within GFF5174 at 55.450 kb on - strand, within GFF5174 at 55.450 kb on - strand, within GFF5174 at 55.450 kb on - strand, within GFF5174 at 55.450 kb on - strand, within GFF5174 at 55.462 kb on + strand, within GFF5174 at 55.462 kb on + strand, within GFF5174 at 55.462 kb on + strand, within GFF5174 at 55.463 kb on - strand, within GFF5174 at 55.719 kb on + strand, within GFF5174 at 55.720 kb on - strand, within GFF5174 at 55.720 kb on - strand, within GFF5174 at 55.720 kb on - strand, within GFF5174 at 55.780 kb on - strand at 55.782 kb on + strand at 55.782 kb on + strand at 55.783 kb on - strand at 55.783 kb on - strand at 55.783 kb on - strand at 55.907 kb on + strand at 55.907 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.909 kb on + strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.910 kb on - strand at 55.954 kb on + strand at 55.954 kb on + strand at 55.955 kb on - strand at 55.955 kb on - strand at 55.993 kb on + strand at 56.139 kb on - strand at 56.139 kb on - strand at 56.166 kb on - strand at 56.166 kb on - strand at 56.166 kb on - strand at 56.286 kb on - strand at 56.385 kb on - strand, within GFF5175 at 56.385 kb on - strand, within GFF5175 at 56.406 kb on - strand, within GFF5175 at 56.406 kb on - strand, within GFF5175 at 56.573 kb on + strand, within GFF5175 at 56.574 kb on - strand, within GFF5175 at 56.672 kb on + strand, within GFF5175 at 56.672 kb on + strand, within GFF5175 at 56.672 kb on + strand, within GFF5175 at 56.673 kb on - strand, within GFF5175 at 56.861 kb on + strand, within GFF5175
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 53,812 + -0.5 53,812 + -0.3 53,829 - -0.2 53,829 - -0.9 53,893 + GFF5172 0.28 +0.2 53,893 + GFF5172 0.28 +0.1 53,925 + GFF5172 0.43 -2.2 53,926 - GFF5172 0.43 +0.2 54,030 + +1.0 54,030 + -2.1 54,030 + -1.5 54,055 + -0.5 54,073 - +0.3 54,073 - -0.8 54,078 + -0.2 54,079 - +0.2 54,103 - -0.4 54,220 - GFF5173 0.16 -0.2 54,267 + GFF5173 0.25 +1.0 54,267 + GFF5173 0.25 +0.3 54,267 + GFF5173 0.25 -0.2 54,267 + GFF5173 0.25 -0.8 54,268 - GFF5173 0.25 +0.0 54,373 + GFF5173 0.47 -0.3 54,373 + GFF5173 0.47 -1.9 54,373 + GFF5173 0.47 -2.7 54,500 + GFF5173 0.73 +0.4 54,500 + GFF5173 0.73 +0.7 54,501 - GFF5173 0.73 +1.7 54,501 - GFF5173 0.73 -1.0 54,530 - GFF5173 0.79 -0.3 54,530 - GFF5173 0.79 -0.2 54,530 - GFF5173 0.79 +0.5 54,588 + +0.5 54,589 - -0.6 54,630 + +0.4 54,630 + +0.7 54,631 - -1.1 54,631 - -0.2 54,640 - +0.1 54,688 + -0.1 54,689 - +1.2 54,689 - -1.0 54,697 + -0.3 54,698 - -0.9 54,723 + -0.3 54,794 + -0.4 54,795 - -0.1 54,798 - -0.3 54,798 - -3.0 55,062 + GFF5174 0.24 -1.7 55,062 + GFF5174 0.24 -0.5 55,062 + GFF5174 0.24 -1.0 55,062 + GFF5174 0.24 -0.6 55,063 - GFF5174 0.24 -0.8 55,138 + GFF5174 0.31 -0.3 55,139 - GFF5174 0.31 -1.5 55,139 - GFF5174 0.31 -0.6 55,139 - GFF5174 0.31 -0.8 55,225 + GFF5174 0.39 +0.5 55,225 + GFF5174 0.39 -0.5 55,226 - GFF5174 0.39 -0.5 55,226 - GFF5174 0.39 +1.3 55,226 - GFF5174 0.39 -0.3 55,313 + GFF5174 0.48 -0.1 55,314 + GFF5174 0.48 -1.9 55,314 + GFF5174 0.48 +0.6 55,314 + GFF5174 0.48 -0.5 55,314 + GFF5174 0.48 -1.2 55,314 + GFF5174 0.48 -0.6 55,314 + GFF5174 0.48 -2.5 55,315 - GFF5174 0.48 -1.6 55,315 - GFF5174 0.48 +0.8 55,315 - GFF5174 0.48 -0.8 55,315 - GFF5174 0.48 -0.1 55,449 + GFF5174 0.60 -1.0 55,449 + GFF5174 0.60 -0.5 55,449 + GFF5174 0.60 -0.6 55,449 + GFF5174 0.60 -1.3 55,449 + GFF5174 0.60 -1.1 55,449 + GFF5174 0.60 -0.9 55,449 + GFF5174 0.60 -0.8 55,450 - GFF5174 0.61 -1.2 55,450 - GFF5174 0.61 -0.8 55,450 - GFF5174 0.61 +0.2 55,450 - GFF5174 0.61 -0.1 55,462 + GFF5174 0.62 +1.0 55,462 + GFF5174 0.62 -0.9 55,462 + GFF5174 0.62 -0.5 55,463 - GFF5174 0.62 -0.7 55,719 + GFF5174 0.86 -0.0 55,720 - GFF5174 0.86 -0.4 55,720 - GFF5174 0.86 +0.4 55,720 - GFF5174 0.86 -0.3 55,780 - -1.5 55,782 + -1.9 55,782 + -1.7 55,783 - +0.7 55,783 - -0.9 55,783 - -1.6 55,907 + -1.1 55,907 + -0.5 55,909 + -0.3 55,909 + +0.5 55,909 + -0.3 55,909 + +0.8 55,909 + -0.3 55,909 + -0.3 55,909 + -0.8 55,909 + -0.1 55,909 + -0.6 55,910 - -0.1 55,910 - +0.7 55,910 - -0.4 55,910 - +0.8 55,910 - +1.4 55,910 - -0.5 55,954 + -0.1 55,954 + -0.5 55,955 - +1.2 55,955 - +0.9 55,993 + -0.5 56,139 - -0.9 56,139 - -2.0 56,166 - -0.4 56,166 - +1.4 56,166 - +0.5 56,286 - +0.4 56,385 - GFF5175 0.15 -0.2 56,385 - GFF5175 0.15 -0.6 56,406 - GFF5175 0.18 -0.6 56,406 - GFF5175 0.18 -1.1 56,573 + GFF5175 0.43 +0.1 56,574 - GFF5175 0.43 +0.7 56,672 + GFF5175 0.57 -2.1 56,672 + GFF5175 0.57 -1.7 56,672 + GFF5175 0.57 +0.8 56,673 - GFF5175 0.57 -0.7 56,861 + GFF5175 0.84 -1.1
Or see this region's nucleotide sequence