Strain Fitness in Pseudomonas sp. DMC3 around GFF4960

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4959 and GFF4960 overlap by 4 nucleotidesGFF4960 and GFF4961 overlap by 4 nucleotides GFF4959 - hypothetical protein, at 61,363 to 64,173 GFF4959 GFF4960 - putative protein, at 64,170 to 64,841 GFF4960 GFF4961 - Lactate utilization protein B, at 64,838 to 66,295 GFF4961 Position (kb) 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 63.395 kb on + strand, within GFF4959at 63.395 kb on + strand, within GFF4959at 63.396 kb on - strand, within GFF4959at 63.396 kb on - strand, within GFF4959at 63.396 kb on - strand, within GFF4959at 63.456 kb on + strand, within GFF4959at 63.507 kb on + strand, within GFF4959at 63.507 kb on + strand, within GFF4959at 63.521 kb on + strand, within GFF4959at 63.521 kb on + strand, within GFF4959at 63.522 kb on - strand, within GFF4959at 63.574 kb on + strand, within GFF4959at 63.574 kb on + strand, within GFF4959at 63.575 kb on - strand, within GFF4959at 63.575 kb on - strand, within GFF4959at 63.698 kb on + strand, within GFF4959at 63.698 kb on + strand, within GFF4959at 63.698 kb on + strand, within GFF4959at 63.698 kb on + strand, within GFF4959at 63.698 kb on + strand, within GFF4959at 63.698 kb on + strand, within GFF4959at 63.698 kb on + strand, within GFF4959at 63.698 kb on + strand, within GFF4959at 63.699 kb on - strand, within GFF4959at 63.699 kb on - strand, within GFF4959at 63.699 kb on - strand, within GFF4959at 63.699 kb on - strand, within GFF4959at 63.699 kb on - strand, within GFF4959at 63.699 kb on - strand, within GFF4959at 63.699 kb on - strand, within GFF4959at 64.065 kb on - strandat 64.065 kb on - strandat 64.065 kb on - strandat 64.065 kb on - strandat 64.222 kb on + strandat 64.324 kb on + strand, within GFF4960at 64.325 kb on - strand, within GFF4960at 64.325 kb on - strand, within GFF4960at 64.325 kb on - strand, within GFF4960at 64.347 kb on - strand, within GFF4960at 64.519 kb on + strand, within GFF4960at 64.735 kb on + strand, within GFF4960at 64.735 kb on + strand, within GFF4960at 64.735 kb on + strand, within GFF4960at 64.736 kb on - strand, within GFF4960at 64.736 kb on - strand, within GFF4960at 64.742 kb on - strand, within GFF4960at 64.742 kb on - strand, within GFF4960at 64.742 kb on - strand, within GFF4960at 64.823 kb on + strandat 64.824 kb on - strandat 64.824 kb on - strandat 64.952 kb on - strandat 64.952 kb on - strandat 64.993 kb on - strand, within GFF4961at 64.993 kb on - strand, within GFF4961at 65.008 kb on + strand, within GFF4961at 65.008 kb on + strand, within GFF4961at 65.008 kb on + strand, within GFF4961at 65.008 kb on + strand, within GFF4961at 65.009 kb on - strand, within GFF4961at 65.009 kb on - strand, within GFF4961at 65.009 kb on - strand, within GFF4961at 65.009 kb on - strand, within GFF4961at 65.056 kb on - strand, within GFF4961at 65.056 kb on - strand, within GFF4961at 65.056 kb on - strand, within GFF4961at 65.056 kb on - strand, within GFF4961at 65.230 kb on + strand, within GFF4961at 65.230 kb on + strand, within GFF4961at 65.231 kb on - strand, within GFF4961at 65.231 kb on - strand, within GFF4961at 65.231 kb on - strand, within GFF4961at 65.231 kb on - strand, within GFF4961at 65.231 kb on - strand, within GFF4961at 65.265 kb on + strand, within GFF4961at 65.265 kb on + strand, within GFF4961at 65.265 kb on + strand, within GFF4961at 65.265 kb on + strand, within GFF4961at 65.277 kb on + strand, within GFF4961at 65.278 kb on - strand, within GFF4961at 65.278 kb on - strand, within GFF4961at 65.301 kb on + strand, within GFF4961at 65.301 kb on + strand, within GFF4961at 65.302 kb on - strand, within GFF4961at 65.302 kb on - strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.469 kb on + strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.470 kb on - strand, within GFF4961at 65.573 kb on - strand, within GFF4961at 65.748 kb on + strand, within GFF4961at 65.749 kb on - strand, within GFF4961at 65.749 kb on - strand, within GFF4961at 65.815 kb on + strand, within GFF4961at 65.815 kb on + strand, within GFF4961at 65.815 kb on + strand, within GFF4961at 65.815 kb on + strand, within GFF4961at 65.816 kb on - strand, within GFF4961

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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63,395 + GFF4959 0.72 -0.6
63,395 + GFF4959 0.72 -1.3
63,396 - GFF4959 0.72 +0.4
63,396 - GFF4959 0.72 -1.9
63,396 - GFF4959 0.72 +0.5
63,456 + GFF4959 0.74 +1.0
63,507 + GFF4959 0.76 +0.2
63,507 + GFF4959 0.76 +0.0
63,521 + GFF4959 0.77 -0.4
63,521 + GFF4959 0.77 -0.1
63,522 - GFF4959 0.77 -2.2
63,574 + GFF4959 0.79 -1.0
63,574 + GFF4959 0.79 +1.3
63,575 - GFF4959 0.79 -1.1
63,575 - GFF4959 0.79 -0.2
63,698 + GFF4959 0.83 +0.9
63,698 + GFF4959 0.83 -1.7
63,698 + GFF4959 0.83 -0.9
63,698 + GFF4959 0.83 +0.5
63,698 + GFF4959 0.83 +0.1
63,698 + GFF4959 0.83 -0.5
63,698 + GFF4959 0.83 +0.3
63,698 + GFF4959 0.83 -0.4
63,699 - GFF4959 0.83 -0.7
63,699 - GFF4959 0.83 +0.0
63,699 - GFF4959 0.83 -0.4
63,699 - GFF4959 0.83 +0.4
63,699 - GFF4959 0.83 -0.2
63,699 - GFF4959 0.83 +0.4
63,699 - GFF4959 0.83 -1.6
64,065 - -0.7
64,065 - +0.1
64,065 - -0.7
64,065 - +0.2
64,222 + -3.2
64,324 + GFF4960 0.23 +1.7
64,325 - GFF4960 0.23 -2.4
64,325 - GFF4960 0.23 -0.8
64,325 - GFF4960 0.23 -1.1
64,347 - GFF4960 0.26 -0.8
64,519 + GFF4960 0.52 -0.7
64,735 + GFF4960 0.84 -0.1
64,735 + GFF4960 0.84 -0.9
64,735 + GFF4960 0.84 -1.1
64,736 - GFF4960 0.84 -1.0
64,736 - GFF4960 0.84 +0.3
64,742 - GFF4960 0.85 -0.6
64,742 - GFF4960 0.85 +0.4
64,742 - GFF4960 0.85 -2.4
64,823 + +1.0
64,824 - -0.0
64,824 - -0.4
64,952 - +0.2
64,952 - +0.4
64,993 - GFF4961 0.11 +0.6
64,993 - GFF4961 0.11 -0.5
65,008 + GFF4961 0.12 -0.8
65,008 + GFF4961 0.12 +0.6
65,008 + GFF4961 0.12 -0.5
65,008 + GFF4961 0.12 +2.0
65,009 - GFF4961 0.12 +0.8
65,009 - GFF4961 0.12 -0.2
65,009 - GFF4961 0.12 -0.4
65,009 - GFF4961 0.12 -0.5
65,056 - GFF4961 0.15 -0.2
65,056 - GFF4961 0.15 +0.1
65,056 - GFF4961 0.15 +0.3
65,056 - GFF4961 0.15 -0.2
65,230 + GFF4961 0.27 +0.3
65,230 + GFF4961 0.27 -0.6
65,231 - GFF4961 0.27 -1.2
65,231 - GFF4961 0.27 +1.7
65,231 - GFF4961 0.27 -0.0
65,231 - GFF4961 0.27 -0.0
65,231 - GFF4961 0.27 -0.6
65,265 + GFF4961 0.29 -0.3
65,265 + GFF4961 0.29 -0.5
65,265 + GFF4961 0.29 -0.2
65,265 + GFF4961 0.29 -0.4
65,277 + GFF4961 0.30 -0.3
65,278 - GFF4961 0.30 -0.9
65,278 - GFF4961 0.30 -0.2
65,301 + GFF4961 0.32 -0.3
65,301 + GFF4961 0.32 -0.4
65,302 - GFF4961 0.32 +0.3
65,302 - GFF4961 0.32 -0.3
65,469 + GFF4961 0.43 +1.5
65,469 + GFF4961 0.43 +0.4
65,469 + GFF4961 0.43 +1.1
65,469 + GFF4961 0.43 +0.2
65,469 + GFF4961 0.43 +0.3
65,469 + GFF4961 0.43 -1.3
65,469 + GFF4961 0.43 -0.2
65,469 + GFF4961 0.43 +0.3
65,470 - GFF4961 0.43 +1.0
65,470 - GFF4961 0.43 -0.8
65,470 - GFF4961 0.43 +0.1
65,470 - GFF4961 0.43 -2.2
65,470 - GFF4961 0.43 -0.3
65,470 - GFF4961 0.43 -2.1
65,470 - GFF4961 0.43 -0.9
65,470 - GFF4961 0.43 +0.7
65,573 - GFF4961 0.50 -0.3
65,748 + GFF4961 0.62 -0.5
65,749 - GFF4961 0.62 -1.1
65,749 - GFF4961 0.62 -1.3
65,815 + GFF4961 0.67 -1.3
65,815 + GFF4961 0.67 +1.0
65,815 + GFF4961 0.67 -0.7
65,815 + GFF4961 0.67 -0.0
65,816 - GFF4961 0.67 -1.2

Or see this region's nucleotide sequence