Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4959 and GFF4960 overlap by 4 nucleotides GFF4960 and GFF4961 overlap by 4 nucleotides
GFF4959 - hypothetical protein, at 61,363 to 64,173
GFF4959
GFF4960 - putative protein, at 64,170 to 64,841
GFF4960
GFF4961 - Lactate utilization protein B, at 64,838 to 66,295
GFF4961
Position (kb)
64
65 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 63.395 kb on + strand, within GFF4959 at 63.395 kb on + strand, within GFF4959 at 63.396 kb on - strand, within GFF4959 at 63.396 kb on - strand, within GFF4959 at 63.396 kb on - strand, within GFF4959 at 63.456 kb on + strand, within GFF4959 at 63.507 kb on + strand, within GFF4959 at 63.507 kb on + strand, within GFF4959 at 63.521 kb on + strand, within GFF4959 at 63.521 kb on + strand, within GFF4959 at 63.522 kb on - strand, within GFF4959 at 63.574 kb on + strand, within GFF4959 at 63.574 kb on + strand, within GFF4959 at 63.575 kb on - strand, within GFF4959 at 63.575 kb on - strand, within GFF4959 at 63.698 kb on + strand, within GFF4959 at 63.698 kb on + strand, within GFF4959 at 63.698 kb on + strand, within GFF4959 at 63.698 kb on + strand, within GFF4959 at 63.698 kb on + strand, within GFF4959 at 63.698 kb on + strand, within GFF4959 at 63.698 kb on + strand, within GFF4959 at 63.698 kb on + strand, within GFF4959 at 63.699 kb on - strand, within GFF4959 at 63.699 kb on - strand, within GFF4959 at 63.699 kb on - strand, within GFF4959 at 63.699 kb on - strand, within GFF4959 at 63.699 kb on - strand, within GFF4959 at 63.699 kb on - strand, within GFF4959 at 63.699 kb on - strand, within GFF4959 at 64.065 kb on - strand at 64.065 kb on - strand at 64.065 kb on - strand at 64.065 kb on - strand at 64.222 kb on + strand at 64.324 kb on + strand, within GFF4960 at 64.325 kb on - strand, within GFF4960 at 64.325 kb on - strand, within GFF4960 at 64.325 kb on - strand, within GFF4960 at 64.347 kb on - strand, within GFF4960 at 64.519 kb on + strand, within GFF4960 at 64.735 kb on + strand, within GFF4960 at 64.735 kb on + strand, within GFF4960 at 64.735 kb on + strand, within GFF4960 at 64.736 kb on - strand, within GFF4960 at 64.736 kb on - strand, within GFF4960 at 64.742 kb on - strand, within GFF4960 at 64.742 kb on - strand, within GFF4960 at 64.742 kb on - strand, within GFF4960 at 64.823 kb on + strand at 64.824 kb on - strand at 64.824 kb on - strand at 64.952 kb on - strand at 64.952 kb on - strand at 64.993 kb on - strand, within GFF4961 at 64.993 kb on - strand, within GFF4961 at 65.008 kb on + strand, within GFF4961 at 65.008 kb on + strand, within GFF4961 at 65.008 kb on + strand, within GFF4961 at 65.008 kb on + strand, within GFF4961 at 65.009 kb on - strand, within GFF4961 at 65.009 kb on - strand, within GFF4961 at 65.009 kb on - strand, within GFF4961 at 65.009 kb on - strand, within GFF4961 at 65.056 kb on - strand, within GFF4961 at 65.056 kb on - strand, within GFF4961 at 65.056 kb on - strand, within GFF4961 at 65.056 kb on - strand, within GFF4961 at 65.230 kb on + strand, within GFF4961 at 65.230 kb on + strand, within GFF4961 at 65.231 kb on - strand, within GFF4961 at 65.231 kb on - strand, within GFF4961 at 65.231 kb on - strand, within GFF4961 at 65.231 kb on - strand, within GFF4961 at 65.231 kb on - strand, within GFF4961 at 65.265 kb on + strand, within GFF4961 at 65.265 kb on + strand, within GFF4961 at 65.265 kb on + strand, within GFF4961 at 65.265 kb on + strand, within GFF4961 at 65.277 kb on + strand, within GFF4961 at 65.278 kb on - strand, within GFF4961 at 65.278 kb on - strand, within GFF4961 at 65.301 kb on + strand, within GFF4961 at 65.301 kb on + strand, within GFF4961 at 65.302 kb on - strand, within GFF4961 at 65.302 kb on - strand, within GFF4961 at 65.469 kb on + strand, within GFF4961 at 65.469 kb on + strand, within GFF4961 at 65.469 kb on + strand, within GFF4961 at 65.469 kb on + strand, within GFF4961 at 65.469 kb on + strand, within GFF4961 at 65.469 kb on + strand, within GFF4961 at 65.469 kb on + strand, within GFF4961 at 65.469 kb on + strand, within GFF4961 at 65.470 kb on - strand, within GFF4961 at 65.470 kb on - strand, within GFF4961 at 65.470 kb on - strand, within GFF4961 at 65.470 kb on - strand, within GFF4961 at 65.470 kb on - strand, within GFF4961 at 65.470 kb on - strand, within GFF4961 at 65.470 kb on - strand, within GFF4961 at 65.470 kb on - strand, within GFF4961 at 65.573 kb on - strand, within GFF4961 at 65.748 kb on + strand, within GFF4961 at 65.749 kb on - strand, within GFF4961 at 65.749 kb on - strand, within GFF4961 at 65.815 kb on + strand, within GFF4961 at 65.815 kb on + strand, within GFF4961 at 65.815 kb on + strand, within GFF4961 at 65.815 kb on + strand, within GFF4961 at 65.816 kb on - strand, within GFF4961
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 63,395 + GFF4959 0.72 -0.6 63,395 + GFF4959 0.72 -1.3 63,396 - GFF4959 0.72 +0.4 63,396 - GFF4959 0.72 -1.9 63,396 - GFF4959 0.72 +0.5 63,456 + GFF4959 0.74 +1.0 63,507 + GFF4959 0.76 +0.2 63,507 + GFF4959 0.76 +0.0 63,521 + GFF4959 0.77 -0.4 63,521 + GFF4959 0.77 -0.1 63,522 - GFF4959 0.77 -2.2 63,574 + GFF4959 0.79 -1.0 63,574 + GFF4959 0.79 +1.3 63,575 - GFF4959 0.79 -1.1 63,575 - GFF4959 0.79 -0.2 63,698 + GFF4959 0.83 +0.9 63,698 + GFF4959 0.83 -1.7 63,698 + GFF4959 0.83 -0.9 63,698 + GFF4959 0.83 +0.5 63,698 + GFF4959 0.83 +0.1 63,698 + GFF4959 0.83 -0.5 63,698 + GFF4959 0.83 +0.3 63,698 + GFF4959 0.83 -0.4 63,699 - GFF4959 0.83 -0.7 63,699 - GFF4959 0.83 +0.0 63,699 - GFF4959 0.83 -0.4 63,699 - GFF4959 0.83 +0.4 63,699 - GFF4959 0.83 -0.2 63,699 - GFF4959 0.83 +0.4 63,699 - GFF4959 0.83 -1.6 64,065 - -0.7 64,065 - +0.1 64,065 - -0.7 64,065 - +0.2 64,222 + -3.2 64,324 + GFF4960 0.23 +1.7 64,325 - GFF4960 0.23 -2.4 64,325 - GFF4960 0.23 -0.8 64,325 - GFF4960 0.23 -1.1 64,347 - GFF4960 0.26 -0.8 64,519 + GFF4960 0.52 -0.7 64,735 + GFF4960 0.84 -0.1 64,735 + GFF4960 0.84 -0.9 64,735 + GFF4960 0.84 -1.1 64,736 - GFF4960 0.84 -1.0 64,736 - GFF4960 0.84 +0.3 64,742 - GFF4960 0.85 -0.6 64,742 - GFF4960 0.85 +0.4 64,742 - GFF4960 0.85 -2.4 64,823 + +1.0 64,824 - -0.0 64,824 - -0.4 64,952 - +0.2 64,952 - +0.4 64,993 - GFF4961 0.11 +0.6 64,993 - GFF4961 0.11 -0.5 65,008 + GFF4961 0.12 -0.8 65,008 + GFF4961 0.12 +0.6 65,008 + GFF4961 0.12 -0.5 65,008 + GFF4961 0.12 +2.0 65,009 - GFF4961 0.12 +0.8 65,009 - GFF4961 0.12 -0.2 65,009 - GFF4961 0.12 -0.4 65,009 - GFF4961 0.12 -0.5 65,056 - GFF4961 0.15 -0.2 65,056 - GFF4961 0.15 +0.1 65,056 - GFF4961 0.15 +0.3 65,056 - GFF4961 0.15 -0.2 65,230 + GFF4961 0.27 +0.3 65,230 + GFF4961 0.27 -0.6 65,231 - GFF4961 0.27 -1.2 65,231 - GFF4961 0.27 +1.7 65,231 - GFF4961 0.27 -0.0 65,231 - GFF4961 0.27 -0.0 65,231 - GFF4961 0.27 -0.6 65,265 + GFF4961 0.29 -0.3 65,265 + GFF4961 0.29 -0.5 65,265 + GFF4961 0.29 -0.2 65,265 + GFF4961 0.29 -0.4 65,277 + GFF4961 0.30 -0.3 65,278 - GFF4961 0.30 -0.9 65,278 - GFF4961 0.30 -0.2 65,301 + GFF4961 0.32 -0.3 65,301 + GFF4961 0.32 -0.4 65,302 - GFF4961 0.32 +0.3 65,302 - GFF4961 0.32 -0.3 65,469 + GFF4961 0.43 +1.5 65,469 + GFF4961 0.43 +0.4 65,469 + GFF4961 0.43 +1.1 65,469 + GFF4961 0.43 +0.2 65,469 + GFF4961 0.43 +0.3 65,469 + GFF4961 0.43 -1.3 65,469 + GFF4961 0.43 -0.2 65,469 + GFF4961 0.43 +0.3 65,470 - GFF4961 0.43 +1.0 65,470 - GFF4961 0.43 -0.8 65,470 - GFF4961 0.43 +0.1 65,470 - GFF4961 0.43 -2.2 65,470 - GFF4961 0.43 -0.3 65,470 - GFF4961 0.43 -2.1 65,470 - GFF4961 0.43 -0.9 65,470 - GFF4961 0.43 +0.7 65,573 - GFF4961 0.50 -0.3 65,748 + GFF4961 0.62 -0.5 65,749 - GFF4961 0.62 -1.1 65,749 - GFF4961 0.62 -1.3 65,815 + GFF4961 0.67 -1.3 65,815 + GFF4961 0.67 +1.0 65,815 + GFF4961 0.67 -0.7 65,815 + GFF4961 0.67 -0.0 65,816 - GFF4961 0.67 -1.2
Or see this region's nucleotide sequence